Wall clock time and date at job start Fri Apr 10 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46500 * 120.00001 * 2 1 4 4 C 1.50701 * 109.46993 * 274.45749 * 3 2 1 5 5 H 1.07998 * 120.00053 * 4.70949 * 4 3 2 6 6 C 1.37878 * 120.00211 * 184.70094 * 4 3 2 7 7 N 1.31517 * 119.99861 * 5.34466 * 6 4 3 8 8 Si 1.86798 * 120.00164 * 185.34236 * 6 4 3 9 9 H 1.48500 * 109.47181 * 94.98411 * 8 6 4 10 10 H 1.48503 * 109.47001 * 214.98187 * 8 6 4 11 11 H 1.48494 * 109.47251 * 334.98239 * 8 6 4 12 12 S 1.65606 * 120.00169 * 179.97438 * 2 1 3 13 13 O 1.42097 * 106.40145 * 159.92972 * 12 2 1 14 14 O 1.42100 * 106.39842 * 27.01064 * 12 2 1 15 15 N 1.65597 * 107.21630 * 273.46874 * 12 2 1 16 16 C 1.46502 * 119.99960 * 64.81549 * 15 12 2 17 17 C 1.52993 * 109.47368 * 163.75174 * 16 15 12 18 18 C 1.52998 * 109.47341 * 184.71199 * 17 16 15 19 19 O 1.42898 * 109.52190 * 60.81588 * 18 17 16 20 20 C 1.53178 * 109.52507 * 180.94105 * 18 17 16 21 21 C 1.53174 * 109.03787 * 176.94965 * 20 18 17 22 22 C 1.53088 * 109.16302 * 303.01827 * 21 20 18 23 23 O 1.42904 * 109.41499 * 57.60973 * 22 21 20 24 24 C 1.42904 * 114.09700 * 298.84145 * 23 22 21 25 25 H 1.08997 * 109.47415 * 270.00069 * 1 2 3 26 26 H 1.09002 * 109.47136 * 29.99902 * 1 2 3 27 27 H 1.08996 * 109.46849 * 150.00179 * 1 2 3 28 28 H 1.09000 * 109.47653 * 34.45917 * 3 2 1 29 29 H 1.09003 * 109.47487 * 154.46031 * 3 2 1 30 30 H 0.97001 * 120.00216 * 179.97438 * 7 6 4 31 31 H 0.96997 * 119.99977 * 244.80419 * 15 12 2 32 32 H 1.09005 * 109.47531 * 43.74678 * 16 15 12 33 33 H 1.09002 * 109.46783 * 283.75244 * 16 15 12 34 34 H 1.09003 * 109.47317 * 64.71129 * 17 16 15 35 35 H 1.09001 * 109.47076 * 304.71053 * 17 16 15 36 36 H 0.96703 * 114.00404 * 300.12429 * 19 18 17 37 37 H 1.09007 * 109.54585 * 296.81766 * 20 18 17 38 38 H 1.09004 * 109.54487 * 57.08386 * 20 18 17 39 39 H 1.09001 * 109.52489 * 62.92386 * 21 20 18 40 40 H 1.09006 * 109.52094 * 183.11673 * 21 20 18 41 41 H 1.08998 * 109.48384 * 297.62796 * 22 21 20 42 42 H 1.09004 * 109.49338 * 177.59929 * 22 21 20 43 43 H 1.08996 * 109.48077 * 301.17697 * 24 23 22 44 44 H 1.09001 * 109.48787 * 181.14556 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3530 1.7590 -1.4165 5 1 1.8821 1.2239 -2.2279 6 6 3.0963 2.8907 -1.6767 7 7 3.7557 3.4822 -0.7046 8 14 3.1669 3.5837 -3.4099 9 1 2.1449 4.6508 -3.5584 10 1 4.5158 4.1519 -3.6613 11 1 2.8964 2.4996 -4.3880 12 16 2.2931 -1.4342 0.0006 13 8 3.6025 -1.1416 -0.4673 14 8 1.4419 -2.3891 -0.6180 15 7 2.4553 -1.9058 1.5797 16 6 1.2683 -2.2456 2.3683 17 6 1.6911 -3.0185 3.6192 18 6 0.4458 -3.4750 4.3818 19 8 -0.3342 -4.3367 3.5505 20 6 0.8678 -4.2287 5.6468 21 6 -0.3845 -4.6139 6.4402 22 6 -1.1868 -3.3493 6.7579 23 8 -1.5207 -2.6802 5.5401 24 6 -0.3886 -2.2545 4.7790 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6454 2.0071 0.5815 29 1 3.1822 1.1198 0.4431 30 1 4.2790 4.2782 -0.8877 31 1 3.3362 -1.9572 1.9825 32 1 0.5983 -2.8624 1.7692 33 1 0.7538 -1.3310 2.6629 34 1 2.2927 -2.3730 4.2591 35 1 2.2778 -3.8894 3.3271 36 1 -0.6363 -3.9238 2.7298 37 1 1.4149 -5.1297 5.3691 38 1 1.5039 -3.5882 6.2578 39 1 -0.9963 -5.2941 5.8477 40 1 -0.0911 -5.1021 7.3696 41 1 -0.5890 -2.6873 7.3843 42 1 -2.1010 -3.6215 7.2855 43 1 0.2197 -1.5782 5.3795 44 1 -0.7276 -1.7380 3.8809 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593662355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:00 Heat of formation + Delta-G solvation = -209.210227 kcal Electronic energy + Delta-G solvation = -26672.651893 eV Core-core repulsion = 22750.389031 eV Total energy + Delta-G solvation = -3922.262862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.00264 -38.33253 -37.86841 -37.20642 -36.84932 -36.13803 -34.50323 -34.00975 -32.38617 -29.66069 -28.96708 -26.77218 -26.23290 -24.93602 -24.20897 -22.41456 -21.05618 -20.43007 -19.01239 -18.45008 -18.21149 -18.07918 -17.52735 -17.03708 -16.76764 -16.58089 -16.09268 -15.96255 -15.53731 -15.22600 -15.03082 -14.92182 -14.35262 -14.16637 -14.09627 -13.84162 -13.55126 -13.38362 -13.29563 -13.14989 -13.03366 -12.93332 -12.91839 -12.68888 -12.50734 -12.42784 -12.29348 -12.10184 -11.96019 -11.79821 -11.75064 -11.33836 -11.08268 -10.60080 -10.47949 -10.14796 -9.77611 -8.20937 -6.32178 -0.32227 1.39070 1.40920 1.51690 2.04784 2.40331 2.64433 2.93035 3.09831 3.29927 3.42333 3.60340 3.75054 3.77121 4.01727 4.07676 4.08896 4.20218 4.24122 4.39727 4.48177 4.60521 4.66429 4.72695 4.74562 4.82742 4.84809 4.95034 4.98857 5.08045 5.09175 5.16699 5.18374 5.21085 5.39185 5.45993 5.69917 5.87501 6.09030 6.15411 6.26025 6.76275 6.79489 7.36557 8.86686 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.003012 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.736843 B = 9292.447712 C = 9646.743762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.002 6.002 3 C 0.270 3.730 4 C -0.553 4.553 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.274 1.274 12 S 2.798 3.202 13 O -1.013 7.013 14 O -1.010 7.010 15 N -1.118 6.118 16 C 0.104 3.896 17 C -0.144 4.144 18 C 0.105 3.895 19 O -0.565 6.565 20 C -0.112 4.112 21 C -0.149 4.149 22 C 0.052 3.948 23 O -0.397 6.397 24 C 0.027 3.973 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.020 0.980 30 H 0.267 0.733 31 H 0.423 0.577 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.384 0.616 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 -13.250 17.203 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.844 5.844 3 C 0.147 3.853 4 C -0.592 4.592 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.198 1.198 12 S 2.805 3.195 13 O -0.997 6.997 14 O -0.993 6.993 15 N -0.881 5.881 16 C -0.022 4.022 17 C -0.184 4.184 18 C 0.063 3.937 19 O -0.373 6.373 20 C -0.149 4.149 21 C -0.187 4.187 22 C -0.024 4.024 23 O -0.316 6.316 24 C -0.050 4.050 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.258 0.742 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.201 -13.939 16.814 23.329 hybrid contribution 0.765 1.086 -0.983 1.653 sum -7.436 -12.853 15.830 21.705 Atomic orbital electron populations 1.21653 0.78053 1.03732 1.02703 1.57470 1.15732 1.21855 1.89364 1.18636 0.90623 0.80287 0.95779 1.21872 1.31989 1.10762 0.94592 0.92990 1.25751 0.94397 0.97275 1.01347 1.70014 1.31255 1.21043 1.33918 0.85573 0.77870 0.78646 0.79801 1.18994 1.20577 1.19844 1.01209 0.72011 0.72512 0.73724 1.93577 1.40996 1.85188 1.79920 1.93503 1.69236 1.61269 1.75279 1.55749 1.15748 1.84416 1.32183 1.21581 0.86838 1.00262 0.93479 1.22408 0.98706 1.01429 0.95832 1.21850 0.89657 0.90799 0.91356 1.86533 1.72356 1.42413 1.36046 1.21655 0.98100 1.01219 0.93926 1.22097 0.96951 0.98581 1.01076 1.22785 1.00840 0.92949 0.85866 1.87941 1.31670 1.76512 1.35427 1.23510 0.88873 0.95404 0.97247 0.90459 0.91131 0.90624 0.95218 0.96192 0.92369 0.74182 0.90367 0.90158 0.88273 0.89918 0.76603 0.90834 0.88630 0.92189 0.89110 0.91909 0.88147 0.90766 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.58 10.69 127.77 1.37 3.95 16 2 N -1.00 -39.64 3.22 -543.23 -1.75 -41.39 16 3 C 0.27 13.42 5.10 85.63 0.44 13.86 16 4 C -0.55 -31.15 9.38 25.60 0.24 -30.91 16 5 H 0.05 2.94 7.82 -2.91 -0.02 2.92 16 6 C 0.01 0.68 5.45 84.65 0.46 1.14 16 7 N -0.92 -53.98 13.29 21.45 0.28 -53.70 16 8 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 9 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 12 S 2.80 106.68 6.11 -56.49 -0.34 106.33 16 13 O -1.01 -48.97 17.00 -128.00 -2.18 -51.14 16 14 O -1.01 -40.21 16.27 -128.00 -2.08 -42.29 16 15 N -1.12 -29.08 6.05 -187.49 -1.13 -30.21 16 16 C 0.10 2.00 5.57 86.38 0.48 2.48 16 17 C -0.14 -2.14 4.64 30.59 0.14 -1.99 16 18 C 0.11 1.61 0.76 -10.70 -0.01 1.60 16 19 O -0.57 -10.77 12.36 -141.82 -1.75 -12.52 16 20 C -0.11 -1.46 5.04 30.71 0.15 -1.31 16 21 C -0.15 -1.97 5.98 30.68 0.18 -1.78 16 22 C 0.05 0.70 6.84 72.01 0.49 1.20 16 23 O -0.40 -7.58 10.70 -141.82 -1.52 -9.09 16 24 C 0.03 0.41 5.34 72.01 0.38 0.79 16 25 H 0.08 1.75 8.09 -2.39 -0.02 1.73 16 26 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 27 H 0.08 2.18 7.05 -2.39 -0.02 2.17 16 28 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 29 H 0.02 1.08 7.52 -2.39 -0.02 1.06 16 30 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.42 9.59 8.66 -96.75 -0.84 8.75 16 32 H 0.08 1.49 6.16 -2.38 -0.01 1.47 16 33 H 0.08 1.33 6.69 -2.39 -0.02 1.31 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.38 5.84 7.27 -74.06 -0.54 5.30 16 37 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.06 1.04 7.83 -2.39 -0.02 1.02 16 40 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 1.46 6.67 -2.39 -0.02 1.45 16 Total: -1.00 -76.31 364.04 -4.48 -80.78 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.36 Total: 17.71 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 4.33 Total: -10.98 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -2.60 Total: -125.30 kcal Atomic # 8 Polarization: -107.52 SS G_CDS: -7.53 Total: -115.05 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 106.68 SS G_CDS: -0.34 Total: 106.33 kcal Total: -76.31 -4.48 -80.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593662355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.429 kcal (2) G-P(sol) polarization free energy of solvation -76.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds