Wall clock time and date at job start Fri Apr 10 2020 18:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.46497 * 120.00246 * 60.00246 * 12 2 1 14 14 S 1.65602 * 119.99924 * 239.99594 * 12 2 1 15 15 O 1.42103 * 106.40353 * 203.53900 * 14 12 2 16 16 O 1.42099 * 106.40295 * 336.46296 * 14 12 2 17 17 N 1.65599 * 107.21440 * 90.00431 * 14 12 2 18 18 C 1.46502 * 119.99782 * 269.99612 * 17 14 12 19 19 C 1.46496 * 120.00364 * 89.99906 * 17 14 12 20 20 C 1.53008 * 109.47249 * 94.99735 * 19 17 14 21 21 H 1.09000 * 109.52155 * 304.99982 * 20 19 17 22 22 C 1.53141 * 109.52471 * 184.87388 * 20 19 17 23 23 O 1.43071 * 109.14880 * 184.78974 * 22 20 19 24 24 C 1.43075 * 113.59553 * 57.95113 * 23 22 20 25 25 C 1.53139 * 109.14714 * 302.04471 * 24 23 22 26 26 O 1.43068 * 109.52183 * 65.13353 * 20 19 17 27 27 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 28 28 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 30 30 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47322 * 89.99723 * 13 12 2 32 32 H 1.08998 * 109.47658 * 209.99981 * 13 12 2 33 33 H 1.09003 * 109.46530 * 330.00118 * 13 12 2 34 34 H 1.09006 * 109.46952 * 90.00208 * 18 17 14 35 35 H 1.09007 * 109.46901 * 209.99928 * 18 17 14 36 36 H 1.09000 * 109.47550 * 330.00209 * 18 17 14 37 37 H 1.08994 * 109.47399 * 215.00021 * 19 17 14 38 38 H 1.09007 * 109.46939 * 335.00211 * 19 17 14 39 39 H 1.09003 * 109.52316 * 304.68719 * 22 20 19 40 40 H 1.08996 * 109.52827 * 64.87730 * 22 20 19 41 41 H 1.08995 * 109.52731 * 61.95255 * 24 23 22 42 42 H 1.09006 * 109.52062 * 182.08162 * 24 23 22 43 43 H 1.09004 * 109.52042 * 175.21468 * 25 24 23 44 44 H 1.09000 * 109.52762 * 295.34813 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5795 1.1829 1.5748 17 7 1.9608 0.8089 3.3998 18 6 1.4470 2.1629 3.1784 19 6 1.5814 0.0697 4.6063 20 6 2.5161 0.4541 5.7551 21 1 3.5506 0.2907 5.4531 22 6 2.1993 -0.4055 6.9822 23 8 2.9994 0.0354 8.0833 24 6 2.8085 1.4142 8.4141 25 6 3.1254 2.2737 7.1869 26 8 2.3263 1.8333 6.0848 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9026 -0.5282 -4.4376 31 1 2.4158 -2.7377 0.9716 32 1 1.6239 -2.2853 2.5001 33 1 0.6905 -2.3002 0.9846 34 1 0.5068 2.1095 2.6294 35 1 1.2795 2.6496 4.1393 36 1 2.1722 2.7370 2.6018 37 1 0.5544 0.3162 4.8756 38 1 1.6603 -1.0008 4.4164 39 1 1.1439 -0.3042 7.2353 40 1 2.4238 -1.4494 6.7636 41 1 1.7737 1.5767 8.7153 42 1 3.4736 1.6878 9.2333 43 1 2.9007 3.3177 7.4056 44 1 4.1810 2.1733 6.9345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594841811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:03 Heat of formation + Delta-G solvation = -144.344431 kcal Electronic energy + Delta-G solvation = -27597.961339 eV Core-core repulsion = 23678.511269 eV Total energy + Delta-G solvation = -3919.450070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18653 -36.93263 -36.74174 -36.41887 -35.69981 -35.32762 -32.51010 -32.13362 -30.06081 -29.05050 -26.84265 -25.83712 -25.11423 -24.92730 -23.11353 -21.35516 -20.85435 -18.56503 -17.59694 -17.32224 -16.96289 -16.56789 -16.52552 -16.31979 -15.85319 -15.50722 -15.37963 -14.81656 -14.33728 -13.90212 -13.58616 -13.54938 -13.36572 -12.95635 -12.79355 -12.61153 -12.33030 -12.27601 -12.19112 -12.11183 -11.89013 -11.75918 -11.52242 -11.38667 -11.28990 -11.17206 -11.07532 -10.89759 -10.67253 -10.47716 -10.16804 -9.61546 -9.45855 -9.41374 -8.94129 -8.63735 -8.12752 -6.13315 -4.13924 1.00356 3.21055 3.24550 3.33430 3.35594 3.40342 3.45165 3.89583 4.31714 4.33866 4.62613 4.68733 4.72577 4.78351 4.83249 4.89237 5.02727 5.16063 5.20913 5.28319 5.39303 5.40904 5.46944 5.56474 5.67085 5.77205 5.98491 6.02841 6.05917 6.15938 6.23919 6.29993 6.46472 6.51349 6.62620 6.68214 6.80205 6.82951 7.26932 7.38067 7.62181 8.46254 8.90896 9.46435 10.99733 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.027895 B = 0.003791 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.523372 B = 7385.083331 C = 7690.687136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.240 3.760 3 H 0.056 0.944 4 C -0.523 4.523 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.264 1.264 11 H -0.293 1.293 12 N -0.984 5.984 13 C 0.109 3.891 14 S 2.777 3.223 15 O -0.988 6.988 16 O -0.970 6.970 17 N -1.008 6.008 18 C 0.089 3.911 19 C 0.139 3.861 20 C 0.033 3.967 21 H 0.077 0.923 22 C 0.033 3.967 23 O -0.378 6.378 24 C 0.024 3.976 25 C 0.022 3.978 26 O -0.368 6.368 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.032 0.968 30 H 0.266 0.734 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 4.108 22.061 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.562 4.562 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.189 1.189 11 H -0.221 1.221 12 N -0.826 5.826 13 C -0.037 4.037 14 S 2.786 3.214 15 O -0.972 6.972 16 O -0.953 6.953 17 N -0.846 5.846 18 C -0.057 4.057 19 C 0.012 3.988 20 C -0.026 4.026 21 H 0.095 0.905 22 C -0.045 4.045 23 O -0.297 6.297 24 C -0.053 4.053 25 C -0.055 4.055 26 O -0.287 6.287 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.579 4.176 21.845 22.526 hybrid contribution -1.039 0.783 -0.263 1.327 sum -4.618 4.959 21.582 22.621 Atomic orbital electron populations 1.22492 0.99142 1.01432 0.99035 1.19081 0.90354 0.93607 0.83473 0.92601 1.21160 1.32541 1.14286 0.88203 0.90023 1.24912 0.95754 0.96568 0.95693 1.69877 1.45179 1.40164 0.97959 0.86947 0.80443 0.83859 0.77564 1.20383 1.18881 1.22065 1.57520 1.70082 1.19997 1.34989 1.21196 1.02065 0.81745 0.98671 1.02152 0.73751 0.73095 0.72398 1.93545 1.68805 1.60376 1.74436 1.93585 1.73740 1.55859 1.72147 1.58017 1.68018 1.25168 1.33367 1.21556 0.99350 0.82028 1.02761 1.21126 0.98508 0.96116 0.83019 1.23412 1.01517 0.82595 0.95114 0.90470 1.23218 0.95520 0.99585 0.86181 1.88108 1.65681 1.25498 1.50367 1.23254 1.02030 0.82404 0.97658 1.23236 0.96085 0.99207 0.86951 1.88101 1.65241 1.25321 1.50060 0.93249 0.92173 0.94849 0.92437 0.92693 0.93281 0.90865 0.93082 0.90114 0.90334 0.89530 0.88523 0.91875 0.87253 0.92181 0.87927 0.87815 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.65 37.16 0.32 -2.92 16 2 C 0.24 5.51 2.21 -69.08 -0.15 5.36 16 3 H 0.06 1.37 5.97 -51.93 -0.31 1.06 16 4 C -0.52 -14.40 8.95 -34.44 -0.31 -14.70 16 5 H 0.08 2.44 7.89 -52.49 -0.41 2.03 16 6 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.88 21.30 24.37 -169.99 -4.14 17.16 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.26 -6.09 6.53 56.52 0.37 -5.72 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 N -0.98 -19.55 3.12 -115.85 -0.36 -19.91 16 13 C 0.11 1.85 9.53 59.85 0.57 2.42 16 14 S 2.78 52.87 6.01 -107.50 -0.65 52.22 16 15 O -0.99 -19.48 16.18 -57.17 -0.93 -20.40 16 16 O -0.97 -22.00 15.30 -57.17 -0.88 -22.87 16 17 N -1.01 -14.61 3.23 -121.75 -0.39 -15.00 16 18 C 0.09 1.17 10.48 59.85 0.63 1.80 16 19 C 0.14 1.58 5.06 -4.04 -0.02 1.56 16 20 C 0.03 0.39 3.08 -26.65 -0.08 0.31 16 21 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 22 C 0.03 0.31 6.34 37.23 0.24 0.55 16 23 O -0.38 -4.09 10.85 -48.76 -0.53 -4.62 16 24 C 0.02 0.19 7.05 37.23 0.26 0.45 16 25 C 0.02 0.20 7.05 37.23 0.26 0.46 16 26 O -0.37 -4.21 8.88 -48.76 -0.43 -4.64 16 27 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 28 H 0.06 1.14 6.66 -51.93 -0.35 0.79 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.65 7.44 -51.93 -0.39 0.27 16 33 H 0.07 1.17 6.43 -51.93 -0.33 0.84 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.93 6.68 -51.93 -0.35 0.58 16 36 H 0.08 1.15 7.02 -51.93 -0.36 0.78 16 37 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 38 H 0.10 0.99 7.26 -51.93 -0.38 0.61 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -34.49 352.73 -7.48 -41.97 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.88 Total: -0.34 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 1.62 Total: -2.74 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.02 Total: -61.06 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -2.76 Total: -52.53 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Atomic # 16 Polarization: 52.87 SS G_CDS: -0.65 Total: 52.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.49 -7.48 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594841811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.374 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds