Wall clock time and date at job start Fri Apr 10 2020 18:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46537 * 2 1 4 4 C 1.46507 * 120.00174 * 275.00041 * 3 2 1 5 5 C 1.50696 * 109.47228 * 275.00525 * 4 3 2 6 6 H 1.08008 * 119.99888 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00022 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99943 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99908 * 359.97438 * 7 5 4 10 10 H 1.48511 * 109.46961 * 89.99891 * 9 7 5 11 11 H 1.48497 * 109.47311 * 209.99745 * 9 7 5 12 12 H 1.48499 * 109.47328 * 330.00182 * 9 7 5 13 13 S 1.65601 * 120.00094 * 95.00705 * 3 2 1 14 14 O 1.42094 * 106.40348 * 156.45519 * 13 3 2 15 15 O 1.42095 * 106.40000 * 23.53444 * 13 3 2 16 16 N 1.65603 * 107.21770 * 269.99632 * 13 3 2 17 17 C 1.46492 * 119.99988 * 270.00032 * 16 13 3 18 18 C 1.46498 * 119.99902 * 89.99842 * 16 13 3 19 19 C 1.52999 * 109.47246 * 95.00081 * 18 16 13 20 20 H 1.08994 * 109.52776 * 59.87006 * 19 18 16 21 21 C 1.53146 * 109.52380 * 179.97438 * 19 18 16 22 22 O 1.43073 * 109.14937 * 175.21335 * 21 19 18 23 23 C 1.43076 * 113.59578 * 302.04912 * 22 21 19 24 24 C 1.53146 * 109.14935 * 57.94883 * 23 22 21 25 25 O 1.43070 * 109.52313 * 299.67153 * 19 18 16 26 26 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46951 * 299.99121 * 1 2 3 28 28 H 1.08989 * 109.47832 * 59.99501 * 1 2 3 29 29 H 1.08997 * 109.46692 * 240.00473 * 2 1 3 30 30 H 1.08996 * 109.47327 * 119.99780 * 2 1 3 31 31 H 1.08995 * 109.46717 * 35.00648 * 4 3 2 32 32 H 1.09001 * 109.46870 * 155.00349 * 4 3 2 33 33 H 0.96998 * 119.99825 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.47098 * 269.99680 * 17 16 13 35 35 H 1.09001 * 109.47554 * 29.99708 * 17 16 13 36 36 H 1.08999 * 109.47327 * 149.99877 * 17 16 13 37 37 H 1.09008 * 109.47233 * 334.99636 * 18 16 13 38 38 H 1.09007 * 109.47096 * 215.00336 * 18 16 13 39 39 H 1.08996 * 109.52874 * 295.11742 * 21 19 18 40 40 H 1.09003 * 109.52413 * 55.31433 * 21 19 18 41 41 H 1.09007 * 109.52119 * 298.05112 * 23 22 21 42 42 H 1.08994 * 109.58181 * 177.88650 * 23 22 21 43 43 H 1.09006 * 109.51952 * 184.78461 * 24 23 22 44 44 H 1.09007 * 109.52151 * 64.59693 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4946 1.7890 -1.8824 6 1 4.1723 1.1118 -1.3837 7 6 3.8522 2.3608 -3.0850 8 7 5.0188 2.0821 -3.6245 9 14 2.6798 3.5314 -3.9479 10 1 2.9430 4.9203 -3.4928 11 1 2.8847 3.4443 -5.4160 12 1 1.2797 3.1603 -3.6206 13 16 2.4122 2.1202 1.4287 14 8 3.3283 3.1570 1.1049 15 8 2.7096 1.0800 2.3498 16 7 1.0431 2.8642 1.9896 17 6 0.7516 4.2475 1.6057 18 6 0.1235 2.1389 2.8696 19 6 0.4549 2.4588 4.3286 20 1 0.3534 3.5305 4.4987 21 6 -0.5062 1.7016 5.2496 22 8 -0.1200 1.9172 6.6103 23 6 1.2218 1.5110 6.8960 24 6 2.1829 2.2682 5.9749 25 8 1.7969 2.0530 4.6141 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3616 1.8098 -1.9452 32 1 2.0920 3.1804 -1.0755 33 1 5.2702 2.4841 -4.4706 34 1 1.1985 4.9277 2.3309 35 1 1.1670 4.4457 0.6177 36 1 -0.3277 4.3986 1.5830 37 1 0.2276 1.0671 2.6999 38 1 -0.9009 2.4429 2.6546 39 1 -1.5215 2.0674 5.0968 40 1 -0.4639 0.6361 5.0235 41 1 1.3221 0.4391 6.7252 42 1 1.4587 1.7380 7.9354 43 1 3.1982 1.9023 6.1279 44 1 2.1407 3.3337 6.2011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594842213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:19 Heat of formation + Delta-G solvation = -150.578279 kcal Electronic energy + Delta-G solvation = -27846.923708 eV Core-core repulsion = 23927.203318 eV Total energy + Delta-G solvation = -3919.720390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06299 -36.78861 -36.51066 -36.14551 -35.60616 -35.02440 -32.57619 -32.04918 -30.27584 -28.85705 -27.11615 -26.96493 -24.85780 -23.10889 -22.90227 -21.48932 -21.18280 -18.39729 -17.41397 -17.08050 -17.02072 -16.78065 -16.53155 -15.94416 -15.80500 -15.45720 -15.08954 -14.72817 -14.16109 -13.91359 -13.63383 -13.56390 -13.35890 -12.96601 -12.72249 -12.62087 -12.44721 -12.20220 -12.04093 -11.95426 -11.87352 -11.53999 -11.32463 -11.17579 -11.15180 -11.06685 -10.94145 -10.78833 -10.52152 -10.44596 -10.34643 -10.17140 -9.53543 -9.30156 -8.91497 -8.57656 -8.08870 -6.06593 -4.05497 1.20510 3.26832 3.31791 3.32504 3.36814 3.50202 3.65775 4.10104 4.39118 4.42736 4.72282 4.74577 4.83260 4.90833 4.95207 4.96782 5.11798 5.23219 5.27293 5.30770 5.36010 5.42943 5.50856 5.57532 5.62356 5.66341 5.67711 5.71757 5.87325 5.91381 6.09207 6.20715 6.46700 6.52316 6.65774 6.73823 6.78591 7.04500 7.13630 7.47015 7.60529 8.51334 8.98801 9.52546 11.07151 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.004054 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.591628 B = 6905.022763 C = 6994.657719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.989 5.989 4 C 0.229 3.771 5 C -0.530 4.530 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.779 3.221 14 O -0.963 6.963 15 O -0.968 6.968 16 N -1.010 6.010 17 C 0.095 3.905 18 C 0.137 3.863 19 C 0.031 3.969 20 H 0.070 0.930 21 C 0.032 3.968 22 O -0.381 6.381 23 C 0.024 3.976 24 C 0.022 3.978 25 O -0.348 6.348 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.819 -0.096 16.616 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 N -0.829 5.829 4 C 0.105 3.895 5 C -0.569 4.569 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.787 3.213 14 O -0.947 6.947 15 O -0.952 6.952 16 N -0.847 5.847 17 C -0.051 4.051 18 C 0.010 3.990 19 C -0.029 4.029 20 H 0.088 0.912 21 C -0.046 4.046 22 O -0.300 6.300 23 C -0.053 4.053 24 C -0.055 4.055 25 O -0.266 6.266 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.848 -0.032 16.849 21.809 hybrid contribution -0.828 0.752 -0.759 1.352 sum -14.676 0.720 16.090 21.789 Atomic orbital electron populations 1.22307 0.97408 1.01548 1.01843 1.21168 0.92817 0.83134 1.03976 1.57681 1.81181 1.21426 1.22638 1.19385 0.98149 0.90751 0.81214 1.21388 1.00867 1.28857 1.05807 0.90458 1.24872 0.95072 0.96093 0.96955 1.69898 1.20553 1.44053 1.18876 0.86933 0.81832 0.82234 0.79200 1.19798 1.20967 1.18961 1.02254 0.73072 0.73427 0.72545 1.93615 1.58866 1.57991 1.84213 1.93563 1.82428 1.57011 1.62186 1.58198 1.43403 1.22268 1.60872 1.21434 1.01353 0.81473 1.00792 1.21189 0.93941 0.97578 0.86309 1.23301 0.84488 0.98947 0.96199 0.91210 1.23199 0.98777 1.00449 0.82131 1.88057 1.29570 1.85407 1.26949 1.23272 0.82621 0.99240 1.00151 1.23245 0.99489 0.99769 0.83043 1.88409 1.27736 1.84669 1.25826 0.92026 0.93408 0.92138 0.89531 0.90248 0.95019 0.95691 0.92555 0.92920 0.90748 0.91515 0.89193 0.89019 0.87817 0.91693 0.91881 0.87988 0.87648 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.12 1.96 6.40 -4.04 -0.03 1.93 16 3 N -0.99 -20.15 2.82 -115.66 -0.33 -20.48 16 4 C 0.23 5.38 4.17 -5.19 -0.02 5.35 16 5 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 6 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 9 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 13 S 2.78 56.23 5.86 -107.50 -0.63 55.60 16 14 O -0.96 -23.66 16.18 -57.18 -0.93 -24.59 16 15 O -0.97 -20.34 13.84 -65.34 -0.90 -21.25 16 16 N -1.01 -15.00 3.13 -121.76 -0.38 -15.38 16 17 C 0.10 1.22 10.33 59.84 0.62 1.84 16 18 C 0.14 1.56 4.47 -4.04 -0.02 1.55 16 19 C 0.03 0.36 3.11 -26.66 -0.08 0.28 16 20 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 21 C 0.03 0.31 6.34 37.23 0.24 0.54 16 22 O -0.38 -4.19 10.85 -48.79 -0.53 -4.72 16 23 C 0.02 0.23 7.05 37.23 0.26 0.49 16 24 C 0.02 0.25 7.05 37.23 0.26 0.51 16 25 O -0.35 -5.16 8.40 -62.28 -0.52 -5.68 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.54 6.08 -51.93 -0.32 0.23 16 28 H 0.06 0.81 8.14 -51.94 -0.42 0.39 16 29 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 30 H 0.08 1.30 6.91 -51.93 -0.36 0.94 16 31 H 0.03 0.71 7.16 -51.93 -0.37 0.33 16 32 H 0.03 0.59 6.69 -51.93 -0.35 0.24 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.07 1.07 7.44 -51.93 -0.39 0.68 16 36 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 37 H 0.09 1.05 6.36 -51.92 -0.33 0.72 16 38 H 0.09 0.72 7.96 -51.93 -0.41 0.30 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 360.29 15.07 5.43 5.43 Total: -1.00 -36.75 360.29 -8.69 -45.44 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.18 Total: -0.91 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 1.17 Total: -2.90 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: 0.07 Total: -62.77 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -2.88 Total: -56.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 56.23 SS G_CDS: -0.63 Total: 55.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.75 -8.69 -45.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594842213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.135 kcal (2) G-P(sol) polarization free energy of solvation -36.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds