Wall clock time and date at job start Fri Apr 10 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46537 * 2 1 4 4 C 1.46507 * 120.00174 * 275.00041 * 3 2 1 5 5 C 1.50696 * 109.47228 * 275.00525 * 4 3 2 6 6 H 1.08008 * 119.99888 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00022 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99943 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99908 * 359.97438 * 7 5 4 10 10 H 1.48511 * 109.46961 * 89.99891 * 9 7 5 11 11 H 1.48497 * 109.47311 * 209.99745 * 9 7 5 12 12 H 1.48499 * 109.47328 * 330.00182 * 9 7 5 13 13 S 1.65601 * 120.00094 * 95.00705 * 3 2 1 14 14 O 1.42094 * 106.40348 * 156.45519 * 13 3 2 15 15 O 1.42095 * 106.40000 * 23.53444 * 13 3 2 16 16 N 1.65603 * 107.21770 * 269.99632 * 13 3 2 17 17 C 1.46492 * 119.99988 * 270.00032 * 16 13 3 18 18 C 1.46498 * 119.99902 * 89.99842 * 16 13 3 19 19 C 1.52999 * 109.47246 * 95.00081 * 18 16 13 20 20 H 1.08994 * 109.52776 * 59.87006 * 19 18 16 21 21 C 1.53146 * 109.52380 * 179.97438 * 19 18 16 22 22 O 1.43073 * 109.14937 * 175.21335 * 21 19 18 23 23 C 1.43076 * 113.59578 * 302.04912 * 22 21 19 24 24 C 1.53146 * 109.14935 * 57.94883 * 23 22 21 25 25 O 1.43070 * 109.52313 * 299.67153 * 19 18 16 26 26 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46951 * 299.99121 * 1 2 3 28 28 H 1.08989 * 109.47832 * 59.99501 * 1 2 3 29 29 H 1.08997 * 109.46692 * 240.00473 * 2 1 3 30 30 H 1.08996 * 109.47327 * 119.99780 * 2 1 3 31 31 H 1.08995 * 109.46717 * 35.00648 * 4 3 2 32 32 H 1.09001 * 109.46870 * 155.00349 * 4 3 2 33 33 H 0.96998 * 119.99825 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.47098 * 269.99680 * 17 16 13 35 35 H 1.09001 * 109.47554 * 29.99708 * 17 16 13 36 36 H 1.08999 * 109.47327 * 149.99877 * 17 16 13 37 37 H 1.09008 * 109.47233 * 334.99636 * 18 16 13 38 38 H 1.09007 * 109.47096 * 215.00336 * 18 16 13 39 39 H 1.08996 * 109.52874 * 295.11742 * 21 19 18 40 40 H 1.09003 * 109.52413 * 55.31433 * 21 19 18 41 41 H 1.09007 * 109.52119 * 298.05112 * 23 22 21 42 42 H 1.08994 * 109.58181 * 177.88650 * 23 22 21 43 43 H 1.09006 * 109.51952 * 184.78461 * 24 23 22 44 44 H 1.09007 * 109.52151 * 64.59693 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4946 1.7890 -1.8824 6 1 4.1723 1.1118 -1.3837 7 6 3.8522 2.3608 -3.0850 8 7 5.0188 2.0821 -3.6245 9 14 2.6798 3.5314 -3.9479 10 1 2.9430 4.9203 -3.4928 11 1 2.8847 3.4443 -5.4160 12 1 1.2797 3.1603 -3.6206 13 16 2.4122 2.1202 1.4287 14 8 3.3283 3.1570 1.1049 15 8 2.7096 1.0800 2.3498 16 7 1.0431 2.8642 1.9896 17 6 0.7516 4.2475 1.6057 18 6 0.1235 2.1389 2.8696 19 6 0.4549 2.4588 4.3286 20 1 0.3534 3.5305 4.4987 21 6 -0.5062 1.7016 5.2496 22 8 -0.1200 1.9172 6.6103 23 6 1.2218 1.5110 6.8960 24 6 2.1829 2.2682 5.9749 25 8 1.7969 2.0530 4.6141 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.3616 1.8098 -1.9452 32 1 2.0920 3.1804 -1.0755 33 1 5.2702 2.4841 -4.4706 34 1 1.1985 4.9277 2.3309 35 1 1.1670 4.4457 0.6177 36 1 -0.3277 4.3986 1.5830 37 1 0.2276 1.0671 2.6999 38 1 -0.9009 2.4429 2.6546 39 1 -1.5215 2.0674 5.0968 40 1 -0.4639 0.6361 5.0235 41 1 1.3221 0.4391 6.7252 42 1 1.4587 1.7380 7.9354 43 1 3.1982 1.9023 6.1279 44 1 2.1407 3.3337 6.2011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594842213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:18 Heat of formation + Delta-G solvation = -179.791422 kcal Electronic energy + Delta-G solvation = -27848.190485 eV Core-core repulsion = 23927.203318 eV Total energy + Delta-G solvation = -3920.987167 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.89644 -38.27162 -37.76263 -37.62062 -36.71633 -36.58439 -34.67997 -32.91221 -31.81953 -29.72464 -28.92555 -27.86911 -25.80148 -24.59688 -24.01667 -23.09586 -22.00946 -19.79639 -19.18389 -18.65328 -18.32138 -17.98009 -17.58027 -17.19641 -16.80763 -16.44872 -16.25243 -15.97479 -15.82448 -15.15318 -14.93057 -14.61014 -14.53131 -14.43124 -14.21906 -13.91612 -13.74270 -13.48072 -13.42403 -13.12369 -12.98163 -12.92207 -12.72326 -12.64441 -12.58296 -12.44035 -12.29015 -12.12830 -12.02215 -11.71611 -11.66038 -11.57914 -11.34159 -10.78413 -10.20926 -9.97142 -9.74141 -8.29043 -6.35169 -0.32356 1.36009 1.40922 1.49365 2.05653 2.35711 2.63076 2.75782 2.80827 3.04669 3.43062 3.62917 3.82963 3.90057 4.00275 4.03904 4.11863 4.15246 4.35294 4.42363 4.45274 4.47772 4.58663 4.62798 4.66116 4.70445 4.73278 4.82131 4.84980 4.92598 4.95127 5.03139 5.05154 5.09375 5.41254 5.45799 5.50114 5.58606 5.89877 6.00392 6.19513 6.31882 6.67437 7.27791 8.88942 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.004054 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.591628 B = 6905.022763 C = 6994.657719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 N -0.996 5.996 4 C 0.238 3.762 5 C -0.545 4.545 6 H 0.022 0.978 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.225 1.225 13 S 2.787 3.213 14 O -1.019 7.019 15 O -0.986 6.986 16 N -1.000 6.000 17 C 0.087 3.913 18 C 0.127 3.873 19 C 0.024 3.976 20 H 0.074 0.926 21 C 0.034 3.966 22 O -0.393 6.393 23 C 0.028 3.972 24 C 0.014 3.986 25 O -0.389 6.389 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.268 0.732 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.318 0.846 17.310 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.836 5.836 4 C 0.114 3.886 5 C -0.584 4.584 6 H 0.041 0.959 7 C -0.193 4.193 8 N -0.591 5.591 9 Si 0.766 3.234 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.147 1.147 13 S 2.796 3.204 14 O -1.002 7.002 15 O -0.969 6.969 16 N -0.840 5.840 17 C -0.057 4.057 18 C 0.002 3.998 19 C -0.036 4.036 20 H 0.092 0.908 21 C -0.043 4.043 22 O -0.312 6.312 23 C -0.049 4.049 24 C -0.063 4.063 25 O -0.309 6.309 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.105 0.895 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.122 0.878 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.363 0.873 17.575 25.433 hybrid contribution 0.656 0.386 -0.851 1.142 sum -17.707 1.259 16.724 24.389 Atomic orbital electron populations 1.22224 0.93400 1.03616 1.02812 1.21392 0.96123 0.81325 1.03081 1.57625 1.81781 1.22710 1.21525 1.19141 0.95557 0.91366 0.82583 1.21731 1.02646 1.27901 1.06116 0.95932 1.25994 0.97196 0.98227 0.97854 1.70085 1.23283 1.45983 1.19707 0.85763 0.80948 0.79021 0.77618 1.19313 1.20391 1.14748 1.01665 0.73716 0.72693 0.72343 1.93536 1.62033 1.59652 1.85017 1.93527 1.83348 1.57667 1.62389 1.57694 1.42486 1.22987 1.60875 1.21680 1.04359 0.79960 0.99749 1.21637 0.95412 0.97239 0.85475 1.23504 0.83762 0.99558 0.96736 0.90760 1.23322 0.99623 1.00398 0.80992 1.88042 1.29869 1.85507 1.27735 1.23312 0.81860 0.98776 1.00928 1.23406 1.00122 1.00404 0.82386 1.88350 1.29777 1.85188 1.27539 0.89436 0.91404 0.92114 0.91391 0.90356 0.92638 0.95147 0.92354 0.92741 0.92679 0.86690 0.89514 0.83991 0.84612 0.91591 0.92090 0.85668 0.87771 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 10.24 71.98 0.74 -2.94 16 2 C 0.11 3.56 6.40 86.38 0.55 4.11 16 3 N -1.00 -40.60 2.82 -519.85 -1.47 -42.07 16 4 C 0.24 11.11 4.17 85.63 0.36 11.47 16 5 C -0.54 -32.51 9.94 25.60 0.25 -32.25 16 6 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 7 C 0.00 0.28 5.47 84.65 0.46 0.74 16 8 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 9 Si 0.95 42.86 27.47 68.60 1.88 44.74 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.23 -8.70 6.54 99.48 0.65 -8.05 16 13 S 2.79 113.77 5.86 -56.49 -0.33 113.44 16 14 O -1.02 -51.93 16.18 -128.00 -2.07 -54.00 16 15 O -0.99 -42.31 13.84 -120.19 -1.66 -43.98 16 16 N -1.00 -27.49 3.13 -539.13 -1.69 -29.17 16 17 C 0.09 1.99 10.33 127.77 1.32 3.31 16 18 C 0.13 2.46 4.47 86.38 0.39 2.85 16 19 C 0.02 0.50 3.11 30.64 0.10 0.59 16 20 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 21 C 0.03 0.54 6.34 72.03 0.46 0.99 16 22 O -0.39 -7.61 10.85 -136.02 -1.48 -9.09 16 23 C 0.03 0.49 7.05 72.03 0.51 1.00 16 24 C 0.01 0.30 7.05 72.03 0.51 0.81 16 25 O -0.39 -11.28 8.40 -123.11 -1.03 -12.32 16 26 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.07 1.26 6.08 -2.39 -0.01 1.25 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 2.48 8.11 -2.39 -0.02 2.46 16 30 H 0.08 2.60 6.91 -2.39 -0.02 2.58 16 31 H 0.06 2.33 7.16 -2.39 -0.02 2.31 16 32 H 0.03 1.40 6.69 -2.39 -0.02 1.38 16 33 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 34 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.05 1.48 7.44 -2.39 -0.02 1.47 16 36 H 0.11 1.51 7.94 -2.39 -0.02 1.49 16 37 H 0.09 1.76 6.36 -2.38 -0.02 1.74 16 38 H 0.14 1.33 7.96 -2.38 -0.02 1.32 16 39 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 44 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -86.10 360.29 -0.99 -87.09 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.92 Total: 15.59 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.64 Total: -9.31 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -2.86 Total: -132.16 kcal Atomic # 8 Polarization: -113.14 SS G_CDS: -6.24 Total: -119.38 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Atomic # 16 Polarization: 113.77 SS G_CDS: -0.33 Total: 113.44 kcal Total: -86.10 -0.99 -87.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594842213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.706 kcal (2) G-P(sol) polarization free energy of solvation -86.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds