Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46774 * 2 1 4 4 C 1.50695 * 109.46660 * 119.99805 * 2 1 3 5 5 H 1.07995 * 120.00283 * 120.00490 * 4 2 1 6 6 C 1.37884 * 120.00233 * 299.99746 * 4 2 1 7 7 N 1.31517 * 119.99439 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00295 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47271 * 120.00076 * 8 6 4 11 11 H 1.48493 * 109.47176 * 240.00303 * 8 6 4 12 12 N 1.46496 * 109.47078 * 239.99634 * 2 1 3 13 13 C 1.46501 * 120.00328 * 300.00211 * 12 2 1 14 14 S 1.65598 * 119.99898 * 120.00401 * 12 2 1 15 15 O 1.42102 * 106.40359 * 336.45556 * 14 12 2 16 16 O 1.42104 * 106.40349 * 203.53978 * 14 12 2 17 17 N 1.65594 * 107.22061 * 89.99877 * 14 12 2 18 18 C 1.46501 * 120.00258 * 261.67037 * 17 14 12 19 19 C 1.46496 * 120.00242 * 81.66848 * 17 14 12 20 20 C 1.53004 * 110.45509 * 6.24702 * 19 17 14 21 21 O 1.42907 * 109.47048 * 183.62963 * 20 19 17 22 22 C 1.54511 * 110.63263 * 128.93349 * 19 17 14 23 23 C 1.54473 * 104.06525 * 118.69971 * 22 19 17 24 24 O 1.44424 * 104.80654 * 336.02489 * 23 22 19 25 25 C 1.44436 * 105.27288 * 40.50918 * 24 23 22 26 26 H 1.09001 * 109.47370 * 300.00571 * 1 2 3 27 27 H 1.09003 * 109.46681 * 60.00274 * 1 2 3 28 28 H 1.09001 * 109.47476 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99424 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47081 * 270.00360 * 13 12 2 31 31 H 1.09004 * 109.46815 * 30.00002 * 13 12 2 32 32 H 1.08992 * 109.47510 * 150.00074 * 13 12 2 33 33 H 1.09003 * 109.47276 * 270.00517 * 18 17 14 34 34 H 1.09007 * 109.46695 * 29.99714 * 18 17 14 35 35 H 1.08996 * 109.47435 * 149.99706 * 18 17 14 36 36 H 1.08998 * 109.47437 * 303.62886 * 20 19 17 37 37 H 1.08999 * 109.47235 * 63.63351 * 20 19 17 38 38 H 0.96698 * 113.99691 * 180.02562 * 21 20 19 39 39 H 1.09001 * 110.51144 * 237.35147 * 22 19 17 40 40 H 1.09002 * 110.50988 * 0.05845 * 22 19 17 41 41 H 1.08998 * 110.37487 * 217.19163 * 23 22 19 42 42 H 1.09005 * 110.46270 * 94.90580 * 23 22 19 43 43 H 1.08999 * 110.37158 * 200.65667 * 25 24 23 44 44 H 1.09003 * 110.46470 * 78.36703 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3222 -1.1193 4.0081 9 1 3.1481 -2.2855 3.6040 10 1 3.1470 -0.1856 4.8162 11 1 1.1675 -1.5863 4.8165 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1140 -2.2861 15 8 2.6905 1.4972 -2.1193 16 8 2.8229 -0.5647 -3.5258 17 7 4.5438 -0.1044 -1.8179 18 6 5.2298 0.9356 -1.0471 19 6 5.2497 -1.3375 -2.1744 20 6 4.3891 -2.1971 -3.1026 21 8 5.0608 -3.4300 -3.3688 22 6 6.6070 -1.0153 -2.8387 23 6 7.6488 -1.6500 -1.8911 24 8 6.9865 -1.7224 -0.6097 25 6 5.6321 -2.1289 -0.9040 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7081 1.1611 3.4843 30 1 2.4157 -2.7378 -0.9715 31 1 0.6904 -2.3002 -0.9846 32 1 1.6238 -2.2853 -2.5000 33 1 5.7204 1.6297 -1.7296 34 1 4.5038 1.4759 -0.4394 35 1 5.9754 0.4753 -0.3989 36 1 3.4311 -2.4011 -2.6244 37 1 4.2218 -1.6650 -4.0391 38 1 4.5720 -4.0261 -3.9526 39 1 6.6649 -1.4683 -3.8285 40 1 6.7549 0.0628 -2.9018 41 1 8.5354 -1.0193 -1.8248 42 1 7.9191 -2.6482 -2.2356 43 1 4.9694 -1.8661 -0.0794 44 1 5.5894 -3.2008 -1.0974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601426810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -136.906734 kcal Electronic energy + Delta-G solvation = -28980.314389 eV Core-core repulsion = 25061.186841 eV Total energy + Delta-G solvation = -3919.127547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02746 -37.26286 -36.45314 -36.17914 -35.43516 -35.21732 -32.67425 -31.04465 -29.48660 -29.04255 -26.15452 -25.79289 -25.21376 -24.70260 -22.77213 -20.81681 -20.48601 -18.41433 -17.82530 -17.18779 -16.70637 -16.45697 -16.09268 -15.81987 -15.40961 -15.09771 -14.74082 -14.32823 -14.06338 -13.71098 -13.55966 -13.30652 -13.11484 -12.86866 -12.52140 -12.43571 -12.02972 -11.96393 -11.72690 -11.67422 -11.47609 -11.41312 -11.24985 -11.21942 -11.06809 -10.96989 -10.87969 -10.51025 -10.31364 -10.22408 -10.11244 -9.81370 -9.63052 -9.29469 -8.69995 -8.52005 -8.03843 -6.12932 -4.21528 1.07115 3.19833 3.22957 3.32167 3.35561 3.83059 4.04811 4.24436 4.34005 4.56634 4.72044 4.88674 5.02488 5.12949 5.17978 5.30299 5.34788 5.50890 5.55287 5.74259 5.79168 5.81191 5.86473 5.97723 6.01547 6.03417 6.13929 6.20291 6.24812 6.30797 6.54641 6.72472 6.78040 6.86469 6.92896 7.04604 7.40772 7.57954 7.59258 7.72888 7.99340 8.21019 8.81867 9.45606 10.92059 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.006429 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.211477 B = 4354.117208 C = 5189.607643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.989 5.989 13 C 0.095 3.905 14 S 2.774 3.226 15 O -0.975 6.975 16 O -0.998 6.998 17 N -0.993 5.993 18 C 0.096 3.904 19 C 0.153 3.847 20 C 0.048 3.952 21 O -0.572 6.572 22 C -0.153 4.153 23 C 0.049 3.951 24 O -0.371 6.371 25 C 0.041 3.959 26 H 0.094 0.906 27 H 0.012 0.988 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.384 0.616 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 -5.937 -10.215 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.831 5.831 13 C -0.052 4.052 14 S 2.786 3.214 15 O -0.959 6.959 16 O -0.982 6.982 17 N -0.831 5.831 18 C -0.049 4.049 19 C 0.064 3.936 20 C -0.031 4.031 21 O -0.378 6.378 22 C -0.192 4.192 23 C -0.028 4.028 24 O -0.290 6.290 25 C -0.038 4.038 26 H 0.112 0.888 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.231 0.769 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.284 -4.964 -10.220 14.061 hybrid contribution -0.118 -0.930 0.800 1.232 sum 8.166 -5.894 -9.420 13.790 Atomic orbital electron populations 1.22073 0.97961 0.99625 1.00870 1.18749 0.91861 0.92660 0.80188 0.92413 1.21378 1.31835 1.13073 0.90040 0.91932 1.24916 0.94901 0.94938 0.99007 1.69887 1.36223 1.22625 1.23761 0.86493 0.78617 0.79719 0.82893 1.19718 1.20937 1.21033 1.57739 1.64187 1.21271 1.39916 1.21375 1.02146 0.82093 0.99544 1.02140 0.72408 0.73304 0.73586 1.93576 1.83503 1.32053 1.86741 1.93527 1.86065 1.75589 1.43015 1.57925 1.30621 1.24658 1.69939 1.21447 0.98977 0.89141 0.95304 1.21380 0.93072 0.84339 0.94794 1.23389 0.93310 0.85623 1.00737 1.86307 1.49685 1.29816 1.71979 1.23225 0.93595 1.02301 1.00081 1.23324 0.95672 1.00076 0.83700 1.89125 1.23291 1.89459 1.27110 1.23910 0.84059 0.98535 0.97247 0.88769 0.96878 0.94794 0.92667 0.93654 0.90242 0.91991 0.93359 0.89925 0.90126 0.91779 0.88234 0.76873 0.89567 0.89991 0.89528 0.92150 0.87623 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.95 37.16 0.33 -3.04 16 2 C 0.27 6.34 2.62 -69.08 -0.18 6.16 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.08 8.37 -34.44 -0.29 -13.37 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.96 11.32 55.43 0.63 -23.34 16 8 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.99 -19.63 3.12 -115.86 -0.36 -20.00 16 13 C 0.09 1.58 8.24 59.85 0.49 2.07 16 14 S 2.77 52.88 5.69 -107.50 -0.61 52.26 16 15 O -0.97 -21.80 15.51 -57.17 -0.89 -22.69 16 16 O -1.00 -18.35 12.09 -57.17 -0.69 -19.04 16 17 N -0.99 -16.48 3.16 -106.15 -0.34 -16.82 16 18 C 0.10 1.53 9.14 59.85 0.55 2.08 16 19 C 0.15 2.26 1.07 -130.25 -0.14 2.13 16 20 C 0.05 0.66 4.20 37.16 0.16 0.82 16 21 O -0.57 -6.60 12.08 -35.23 -0.43 -7.03 16 22 C -0.15 -1.92 5.95 -25.17 -0.15 -2.07 16 23 C 0.05 0.60 7.63 37.93 0.29 0.89 16 24 O -0.37 -5.75 10.63 -35.23 -0.37 -6.13 16 25 C 0.04 0.63 6.25 37.93 0.24 0.87 16 26 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 31 H 0.08 1.33 6.43 -51.93 -0.33 1.00 16 32 H 0.06 0.91 6.20 -51.93 -0.32 0.59 16 33 H 0.05 0.66 7.80 -51.93 -0.41 0.25 16 34 H 0.08 1.46 7.57 -51.92 -0.39 1.06 16 35 H 0.08 1.23 6.62 -51.93 -0.34 0.88 16 36 H 0.06 0.92 3.14 -51.93 -0.16 0.76 16 37 H 0.10 1.47 6.10 -51.93 -0.32 1.15 16 38 H 0.38 2.77 9.12 45.56 0.42 3.19 16 39 H 0.09 1.00 7.54 -51.93 -0.39 0.60 16 40 H 0.08 1.00 6.93 -51.93 -0.36 0.64 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.11 1.83 8.06 -51.93 -0.42 1.41 16 44 H 0.08 1.12 7.02 -51.93 -0.36 0.76 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -30.32 342.39 -7.34 -37.66 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.62 Total: 6.51 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 1.20 Total: -1.87 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.07 Total: -60.15 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -2.38 Total: -54.89 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 52.88 SS G_CDS: -0.61 Total: 52.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.32 -7.34 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.251 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds