Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46774 * 2 1 4 4 C 1.50695 * 109.46660 * 119.99805 * 2 1 3 5 5 H 1.07995 * 120.00283 * 120.00490 * 4 2 1 6 6 C 1.37884 * 120.00233 * 299.99746 * 4 2 1 7 7 N 1.31517 * 119.99439 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00295 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47271 * 120.00076 * 8 6 4 11 11 H 1.48493 * 109.47176 * 240.00303 * 8 6 4 12 12 N 1.46496 * 109.47078 * 239.99634 * 2 1 3 13 13 C 1.46501 * 120.00328 * 300.00211 * 12 2 1 14 14 S 1.65598 * 119.99898 * 120.00401 * 12 2 1 15 15 O 1.42102 * 106.40359 * 336.45556 * 14 12 2 16 16 O 1.42104 * 106.40349 * 203.53978 * 14 12 2 17 17 N 1.65594 * 107.22061 * 89.99877 * 14 12 2 18 18 C 1.46501 * 120.00258 * 261.67037 * 17 14 12 19 19 C 1.46496 * 120.00242 * 81.66848 * 17 14 12 20 20 C 1.53004 * 110.45509 * 6.24702 * 19 17 14 21 21 O 1.42907 * 109.47048 * 183.62963 * 20 19 17 22 22 C 1.54511 * 110.63263 * 128.93349 * 19 17 14 23 23 C 1.54473 * 104.06525 * 118.69971 * 22 19 17 24 24 O 1.44424 * 104.80654 * 336.02489 * 23 22 19 25 25 C 1.44436 * 105.27288 * 40.50918 * 24 23 22 26 26 H 1.09001 * 109.47370 * 300.00571 * 1 2 3 27 27 H 1.09003 * 109.46681 * 60.00274 * 1 2 3 28 28 H 1.09001 * 109.47476 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99424 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47081 * 270.00360 * 13 12 2 31 31 H 1.09004 * 109.46815 * 30.00002 * 13 12 2 32 32 H 1.08992 * 109.47510 * 150.00074 * 13 12 2 33 33 H 1.09003 * 109.47276 * 270.00517 * 18 17 14 34 34 H 1.09007 * 109.46695 * 29.99714 * 18 17 14 35 35 H 1.08996 * 109.47435 * 149.99706 * 18 17 14 36 36 H 1.08998 * 109.47437 * 303.62886 * 20 19 17 37 37 H 1.08999 * 109.47235 * 63.63351 * 20 19 17 38 38 H 0.96698 * 113.99691 * 180.02562 * 21 20 19 39 39 H 1.09001 * 110.51144 * 237.35147 * 22 19 17 40 40 H 1.09002 * 110.50988 * 0.05845 * 22 19 17 41 41 H 1.08998 * 110.37487 * 217.19163 * 23 22 19 42 42 H 1.09005 * 110.46270 * 94.90580 * 23 22 19 43 43 H 1.08999 * 110.37158 * 200.65667 * 25 24 23 44 44 H 1.09003 * 110.46470 * 78.36703 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3222 -1.1193 4.0081 9 1 3.1481 -2.2855 3.6040 10 1 3.1470 -0.1856 4.8162 11 1 1.1675 -1.5863 4.8165 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1140 -2.2861 15 8 2.6905 1.4972 -2.1193 16 8 2.8229 -0.5647 -3.5258 17 7 4.5438 -0.1044 -1.8179 18 6 5.2298 0.9356 -1.0471 19 6 5.2497 -1.3375 -2.1744 20 6 4.3891 -2.1971 -3.1026 21 8 5.0608 -3.4300 -3.3688 22 6 6.6070 -1.0153 -2.8387 23 6 7.6488 -1.6500 -1.8911 24 8 6.9865 -1.7224 -0.6097 25 6 5.6321 -2.1289 -0.9040 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7081 1.1611 3.4843 30 1 2.4157 -2.7378 -0.9715 31 1 0.6904 -2.3002 -0.9846 32 1 1.6238 -2.2853 -2.5000 33 1 5.7204 1.6297 -1.7296 34 1 4.5038 1.4759 -0.4394 35 1 5.9754 0.4753 -0.3989 36 1 3.4311 -2.4011 -2.6244 37 1 4.2218 -1.6650 -4.0391 38 1 4.5720 -4.0261 -3.9526 39 1 6.6649 -1.4683 -3.8285 40 1 6.7549 0.0628 -2.9018 41 1 8.5354 -1.0193 -1.8248 42 1 7.9191 -2.6482 -2.2356 43 1 4.9694 -1.8661 -0.0794 44 1 5.5894 -3.2008 -1.0974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601426810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -161.445949 kcal Electronic energy + Delta-G solvation = -28981.378489 eV Core-core repulsion = 25061.186841 eV Total energy + Delta-G solvation = -3920.191648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15127 -38.69305 -38.01292 -37.45587 -36.95920 -36.44650 -34.54473 -32.16862 -31.04613 -30.35361 -27.42479 -27.31961 -27.08086 -25.91818 -23.80909 -22.57917 -21.73536 -19.80028 -19.17374 -18.58469 -18.22014 -18.04183 -17.32479 -17.05364 -16.86683 -16.41787 -16.21930 -15.48220 -15.39272 -15.23131 -14.94585 -14.70436 -14.57510 -14.23292 -13.87185 -13.69037 -13.58764 -13.43482 -13.25711 -12.99116 -12.96386 -12.93949 -12.82361 -12.72986 -12.64778 -12.33251 -12.25393 -12.16524 -12.05338 -11.90784 -11.36890 -11.17887 -10.88026 -10.70721 -10.51028 -9.97019 -9.67524 -8.10094 -6.24046 -0.42181 1.42179 1.46360 1.55217 1.80646 2.41112 2.46409 2.87689 3.16655 3.18921 3.26706 3.50391 3.76643 3.95061 4.05946 4.11459 4.22738 4.29626 4.44247 4.57749 4.61322 4.68752 4.72615 4.77193 4.80738 4.86705 4.92427 4.94971 4.97033 4.99197 5.05756 5.10708 5.15988 5.16871 5.49695 5.62145 5.75751 5.84600 5.85697 6.09208 6.28444 6.85229 6.87441 7.45849 8.94541 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.006429 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.211477 B = 4354.117208 C = 5189.607643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.275 3.725 3 H 0.023 0.977 4 C -0.523 4.523 5 H 0.066 0.934 6 C 0.019 3.981 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.282 1.282 12 N -0.995 5.995 13 C 0.090 3.910 14 S 2.784 3.216 15 O -1.012 7.012 16 O -0.991 6.991 17 N -0.990 5.990 18 C 0.096 3.904 19 C 0.145 3.855 20 C 0.055 3.945 21 O -0.571 6.571 22 C -0.149 4.149 23 C 0.048 3.952 24 O -0.391 6.391 25 C 0.045 3.955 26 H 0.069 0.931 27 H 0.019 0.981 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.404 0.596 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.590 -7.699 -11.197 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.562 4.562 5 H 0.084 0.916 6 C -0.180 4.180 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.208 1.208 12 N -0.837 5.837 13 C -0.056 4.056 14 S 2.796 3.204 15 O -0.996 6.996 16 O -0.975 6.975 17 N -0.830 5.830 18 C -0.049 4.049 19 C 0.056 3.944 20 C -0.024 4.024 21 O -0.380 6.380 22 C -0.188 4.188 23 C -0.028 4.028 24 O -0.310 6.310 25 C -0.033 4.033 26 H 0.088 0.912 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.255 0.745 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.740 -6.766 -11.234 16.335 hybrid contribution -0.503 -0.432 1.021 1.218 sum 9.237 -7.198 -10.212 15.538 Atomic orbital electron populations 1.21952 0.97757 1.00198 1.00017 1.18381 0.91992 0.91227 0.81363 0.95900 1.21594 1.31226 1.12841 0.90565 0.91620 1.25610 0.95244 0.95573 1.01613 1.70012 1.37463 1.23945 1.24191 0.85595 0.78039 0.78729 0.79778 1.19014 1.21273 1.20797 1.57633 1.64918 1.22457 1.38658 1.21583 1.02351 0.80429 1.01195 1.01738 0.72767 0.72352 0.73548 1.93526 1.84381 1.34503 1.87235 1.93543 1.86312 1.75120 1.42494 1.57736 1.29741 1.25638 1.69886 1.21477 0.98299 0.89358 0.95726 1.21622 0.94197 0.83525 0.95044 1.23152 0.92958 0.86442 0.99895 1.86274 1.49843 1.29173 1.72684 1.23250 0.92070 1.02856 1.00642 1.23526 0.95902 1.01221 0.82191 1.89104 1.23272 1.89575 1.29065 1.23781 0.84000 0.98976 0.96542 0.91193 0.96144 0.93418 0.92771 0.92606 0.90402 0.89704 0.90982 0.92469 0.89508 0.92447 0.88908 0.74531 0.88127 0.89533 0.87431 0.91023 0.90113 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.54 8.95 71.98 0.64 -5.89 16 2 C 0.27 13.21 2.62 44.25 0.12 13.33 16 3 H 0.02 1.27 6.91 -2.39 -0.02 1.26 16 4 C -0.52 -26.25 8.37 25.60 0.21 -26.03 16 5 H 0.07 3.20 7.65 -2.91 -0.02 3.17 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.92 -50.57 11.32 21.45 0.24 -50.33 16 8 Si 0.95 41.77 29.54 68.60 2.03 43.79 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 12 N -1.00 -39.27 3.12 -520.46 -1.62 -40.89 16 13 C 0.09 2.86 8.24 127.77 1.05 3.91 16 14 S 2.78 105.21 5.69 -56.49 -0.32 104.88 16 15 O -1.01 -46.16 15.51 -128.00 -1.99 -48.15 16 16 O -0.99 -35.00 12.09 -128.00 -1.55 -36.55 16 17 N -0.99 -32.06 3.16 -489.74 -1.55 -33.61 16 18 C 0.10 3.03 9.14 127.77 1.17 4.19 16 19 C 0.14 3.99 1.07 4.62 0.00 4.00 16 20 C 0.05 1.38 4.20 71.98 0.30 1.69 16 21 O -0.57 -11.34 12.08 -148.98 -1.80 -13.14 16 22 C -0.15 -3.33 5.95 31.61 0.19 -3.14 16 23 C 0.05 1.03 7.63 72.48 0.55 1.58 16 24 O -0.39 -11.37 10.63 -148.98 -1.58 -12.95 16 25 C 0.05 1.33 6.25 72.49 0.45 1.79 16 26 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 2.04 6.66 -2.39 -0.02 2.02 16 29 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.06 1.65 7.66 -2.39 -0.02 1.64 16 31 H 0.08 2.50 6.43 -2.38 -0.02 2.48 16 32 H 0.08 2.30 6.20 -2.39 -0.01 2.29 16 33 H 0.07 1.89 7.80 -2.39 -0.02 1.88 16 34 H 0.06 2.09 7.57 -2.38 -0.02 2.07 16 35 H 0.09 2.59 6.62 -2.39 -0.02 2.58 16 36 H 0.06 1.52 3.14 -2.39 -0.01 1.51 16 37 H 0.09 2.50 6.10 -2.39 -0.01 2.48 16 38 H 0.40 4.43 9.12 -74.06 -0.68 3.76 16 39 H 0.10 1.97 7.54 -2.39 -0.02 1.95 16 40 H 0.09 1.86 6.93 -2.39 -0.02 1.84 16 41 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 43 H 0.08 2.76 8.06 -2.39 -0.02 2.74 16 44 H 0.08 2.30 7.02 -2.39 -0.02 2.29 16 Total: -1.00 -64.71 342.39 -2.64 -67.35 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.35 Total: 22.71 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.15 Total: -3.13 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -2.93 Total: -124.83 kcal Atomic # 8 Polarization: -103.87 SS G_CDS: -6.92 Total: -110.78 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 105.21 SS G_CDS: -0.32 Total: 104.88 kcal Total: -64.71 -2.64 -67.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.096 kcal (2) G-P(sol) polarization free energy of solvation -64.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds