Wall clock time and date at job start Fri Apr 10 2020 18:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37661 * 125.67832 * 2 1 4 4 C 1.46674 * 126.23024 * 359.97438 * 3 2 1 5 5 O 1.21691 * 120.00342 * 26.41107 * 4 3 2 6 6 N 1.34778 * 119.99718 * 206.40492 * 4 3 2 7 7 C 1.47077 * 120.88174 * 7.34311 * 6 4 3 8 8 C 1.53706 * 108.27292 * 128.75605 * 7 6 4 9 9 N 1.46897 * 109.25513 * 54.08533 * 8 7 6 10 10 C 1.46900 * 110.99865 * 172.60542 * 9 8 7 11 11 C 1.50702 * 109.46910 * 60.54480 * 10 9 8 12 12 H 1.08002 * 119.99861 * 355.71649 * 11 10 9 13 13 C 1.37878 * 119.99916 * 175.71821 * 11 10 9 14 14 N 1.31516 * 119.99990 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00068 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46744 * 60.00415 * 15 13 11 17 17 H 1.48499 * 109.47225 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47339 * 300.00421 * 15 13 11 19 19 C 1.46895 * 111.26964 * 296.75625 * 9 8 7 20 20 C 1.47084 * 120.88169 * 187.62758 * 6 4 3 21 21 C 1.37876 * 107.53085 * 180.28062 * 3 2 1 22 22 C 1.39837 * 107.08288 * 359.74112 * 21 3 2 23 23 C 1.35449 * 107.86825 * 359.97438 * 22 21 3 24 24 N 1.48019 * 125.56358 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99866 * 0.03001 * 24 23 22 26 26 O 1.21802 * 120.00393 * 179.74822 * 24 23 22 27 27 H 1.09006 * 109.46787 * 271.50516 * 1 2 3 28 28 H 1.08996 * 109.47220 * 31.49875 * 1 2 3 29 29 H 1.08992 * 109.47021 * 151.50600 * 1 2 3 30 30 H 1.09000 * 109.62947 * 248.52153 * 7 6 4 31 31 H 1.09000 * 109.63061 * 9.11152 * 7 6 4 32 32 H 1.08995 * 109.64744 * 294.07949 * 8 7 6 33 33 H 1.08997 * 109.41644 * 173.94877 * 8 7 6 34 34 H 1.09008 * 109.46932 * 180.54196 * 10 9 8 35 35 H 1.08995 * 109.47560 * 300.54296 * 10 9 8 36 36 H 0.96999 * 119.99697 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.49390 * 303.14135 * 19 9 8 38 38 H 1.09001 * 109.51863 * 183.08160 * 19 9 8 39 39 H 1.09006 * 109.62709 * 350.89719 * 20 6 4 40 40 H 1.08995 * 109.63133 * 111.47334 * 20 6 4 41 41 H 1.07997 * 126.44983 * 179.76016 * 21 3 2 42 42 H 1.08005 * 126.06175 * 180.02562 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1182 0.0000 4 6 1.8124 2.5125 -0.0005 5 8 0.7261 2.7979 0.4678 6 7 2.5971 3.4775 -0.5196 7 6 3.8382 3.1391 -1.2326 8 6 3.8257 3.8596 -2.5903 9 7 3.6059 5.2959 -2.3745 10 6 3.7609 6.0463 -3.6278 11 6 2.7493 5.5596 -4.6331 12 1 2.1067 4.7256 -4.3921 13 6 2.6440 6.1788 -5.8605 14 7 3.4269 7.1940 -6.1541 15 14 1.3905 5.5750 -7.1069 16 1 0.0264 5.6865 -6.5307 17 1 1.4770 6.4028 -8.3367 18 1 1.6712 4.1563 -7.4437 19 6 2.2919 5.5488 -1.7685 20 6 2.2383 4.8973 -0.3826 21 6 3.5780 0.6888 -0.0064 22 6 3.5521 -0.7093 -0.0043 23 6 2.2554 -1.1009 0.0038 24 7 1.7794 -2.5025 0.0081 25 8 2.5824 -3.4184 0.0048 26 8 0.5849 -2.7400 0.0201 27 1 -0.3633 0.0270 1.0274 28 1 -0.3633 0.8762 -0.5369 29 1 -0.3633 -0.9031 -0.4902 30 1 4.6975 3.4677 -0.6482 31 1 3.8885 2.0615 -1.3890 32 1 3.0246 3.4582 -3.2109 33 1 4.7831 3.7091 -3.0892 34 1 3.6024 7.1079 -3.4376 35 1 4.7661 5.8938 -4.0208 36 1 3.3526 7.6299 -7.0174 37 1 1.5120 5.1240 -2.4006 38 1 2.1362 6.6233 -1.6716 39 1 1.2303 4.9827 0.0235 40 1 2.9468 5.3916 0.2820 41 1 4.4583 1.3145 -0.0118 42 1 4.4132 -1.3612 -0.0076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602211148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:50 Heat of formation + Delta-G solvation = 42.398569 kcal Electronic energy + Delta-G solvation = -27660.934086 eV Core-core repulsion = 23646.430600 eV Total energy + Delta-G solvation = -4014.503486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.91960 -41.72501 -39.77602 -37.69530 -36.96172 -34.93633 -33.54553 -32.48958 -31.60010 -30.42448 -28.52031 -27.29276 -26.61537 -25.47041 -23.42685 -23.25566 -21.90091 -21.67840 -20.50794 -19.29166 -18.92847 -18.78712 -18.04472 -17.21998 -16.57304 -16.39349 -16.11533 -15.07494 -14.95510 -14.90079 -14.59051 -14.31066 -14.28298 -13.85573 -13.62572 -13.37347 -13.01149 -12.88356 -12.84879 -12.17977 -12.00091 -11.85734 -11.53481 -11.47608 -11.30437 -11.20279 -11.14875 -10.82048 -10.77083 -10.41706 -10.26232 -10.01794 -9.80659 -9.57198 -9.26710 -8.72518 -8.55991 -7.42448 -6.16440 -4.26381 -0.30343 0.65352 1.06559 1.92101 1.99317 2.76571 2.87714 3.19193 3.25243 3.27184 3.99820 4.15853 4.29260 4.31166 4.72516 4.76563 4.82775 5.05905 5.07617 5.14228 5.21170 5.26258 5.28906 5.38194 5.52029 5.57446 5.65623 5.73257 5.80672 5.89219 6.01376 6.23553 6.28411 6.42738 6.46841 6.55044 7.06069 7.17004 7.32463 7.36038 7.73440 7.79959 7.82324 8.03033 8.11967 8.82636 9.41599 10.88870 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.003250 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.096414 B = 8614.569743 C = 9213.601688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.382 5.382 3 C 0.045 3.955 4 C 0.580 3.420 5 O -0.539 6.539 6 N -0.583 5.583 7 C 0.087 3.913 8 C 0.049 3.951 9 N -0.540 5.540 10 C 0.188 3.812 11 C -0.556 4.556 12 H 0.054 0.946 13 C 0.068 3.932 14 N -0.888 5.888 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.277 1.277 19 C 0.050 3.950 20 C 0.117 3.883 21 C -0.156 4.156 22 C -0.089 4.089 23 C 0.058 3.942 24 N 0.061 4.939 25 O -0.137 6.137 26 O -0.176 6.176 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.264 0.736 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.180 0.820 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 -12.381 13.422 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.058 5.058 3 C -0.077 4.077 4 C 0.366 3.634 5 O -0.418 6.418 6 N -0.315 5.315 7 C -0.035 4.035 8 C -0.081 4.081 9 N -0.264 5.264 10 C 0.063 3.937 11 C -0.595 4.595 12 H 0.073 0.927 13 C -0.135 4.135 14 N -0.526 5.526 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.203 1.203 19 C -0.080 4.080 20 C -0.005 4.005 21 C -0.181 4.181 22 C -0.118 4.118 23 C -0.138 4.138 24 N 0.578 4.422 25 O -0.353 6.353 26 O -0.385 6.385 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.197 0.803 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.214 -11.282 13.827 17.847 hybrid contribution -1.501 -0.935 -1.510 2.325 sum -1.288 -12.218 12.317 17.397 Atomic orbital electron populations 1.22688 0.73601 1.06577 1.05690 1.43712 1.08293 1.02830 1.50925 1.20736 0.90236 0.87647 1.09039 1.16786 0.84409 0.82774 0.79391 1.90844 1.20527 1.82719 1.47676 1.47913 1.23845 1.06651 1.53045 1.22793 0.85551 1.00960 0.94231 1.22341 1.02185 0.90068 0.93488 1.62522 1.27751 1.06738 1.29427 1.19764 0.96726 0.93754 0.83430 1.21669 1.20553 1.16733 1.00512 0.92746 1.24938 0.95715 0.94689 0.98188 1.69918 1.38192 1.21664 1.22843 0.86720 0.81952 0.78875 0.80877 1.20270 1.21021 1.20268 1.22248 0.92480 1.00495 0.92737 1.22004 1.01824 0.77766 0.98890 1.21816 0.95770 0.93819 1.06659 1.20873 0.93406 0.95952 1.01543 1.20802 0.90772 0.78244 1.24029 1.42511 1.00729 1.01186 0.97741 1.94586 1.52280 1.35168 1.53275 1.94535 0.99287 1.89915 1.54799 0.88901 0.87802 0.87451 0.90068 0.88589 0.93794 0.89910 0.94578 0.95069 0.92583 0.93793 0.89931 0.89110 0.90503 0.80287 0.80865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.56 9.86 59.85 0.59 1.15 16 2 N -0.38 -4.51 3.16 -116.62 -0.37 -4.88 16 3 C 0.04 0.53 6.39 -81.98 -0.52 0.00 16 4 C 0.58 8.00 7.44 -12.85 -0.10 7.90 16 5 O -0.54 -8.70 14.98 5.20 0.08 -8.63 16 6 N -0.58 -7.79 3.00 -173.72 -0.52 -8.31 16 7 C 0.09 1.03 5.22 -3.36 -0.02 1.01 16 8 C 0.05 0.79 5.19 -3.46 -0.02 0.77 16 9 N -0.54 -10.07 4.83 -235.47 -1.14 -11.20 16 10 C 0.19 4.43 5.11 -4.97 -0.03 4.40 16 11 C -0.56 -14.33 7.76 -34.44 -0.27 -14.60 16 12 H 0.05 1.41 5.87 -52.49 -0.31 1.10 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -24.97 13.29 55.43 0.74 -24.24 16 15 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.05 0.86 5.23 -3.71 -0.02 0.84 16 20 C 0.12 1.63 6.61 -3.60 -0.02 1.61 16 21 C -0.16 -1.42 8.46 -39.12 -0.33 -1.75 16 22 C -0.09 -0.82 10.46 -39.98 -0.42 -1.24 16 23 C 0.06 0.66 7.87 -144.07 -1.13 -0.47 16 24 N 0.06 0.77 4.45 32.99 0.15 0.92 16 25 O -0.14 -1.72 19.00 -29.46 -0.56 -2.28 16 26 O -0.18 -2.29 16.64 -29.46 -0.49 -2.78 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 1.13 7.16 -51.93 -0.37 0.76 16 29 H 0.11 1.03 6.14 -51.93 -0.32 0.72 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 0.95 4.33 -51.93 -0.22 0.72 16 32 H 0.04 0.82 6.68 -51.93 -0.35 0.48 16 33 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.04 0.92 8.09 -51.92 -0.42 0.50 16 35 H 0.03 0.78 8.13 -51.93 -0.42 0.36 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.04 0.87 7.03 -51.93 -0.37 0.51 16 38 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.09 1.27 7.04 -51.93 -0.37 0.91 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.18 1.18 6.19 -52.49 -0.32 0.85 16 42 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -30.27 344.92 -9.46 -39.73 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.13 Total: -0.60 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -2.38 Total: 1.36 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -1.14 Total: -47.71 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.97 Total: -13.68 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.27 -9.46 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602211148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.125 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds