Wall clock time and date at job start Fri Apr 10 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37661 * 125.67832 * 2 1 4 4 C 1.46674 * 126.23024 * 359.97438 * 3 2 1 5 5 O 1.21691 * 120.00342 * 26.41107 * 4 3 2 6 6 N 1.34778 * 119.99718 * 206.40492 * 4 3 2 7 7 C 1.47077 * 120.88174 * 7.34311 * 6 4 3 8 8 C 1.53706 * 108.27292 * 128.75605 * 7 6 4 9 9 N 1.46897 * 109.25513 * 54.08533 * 8 7 6 10 10 C 1.46900 * 110.99865 * 172.60542 * 9 8 7 11 11 C 1.50702 * 109.46910 * 60.54480 * 10 9 8 12 12 H 1.08002 * 119.99861 * 355.71649 * 11 10 9 13 13 C 1.37878 * 119.99916 * 175.71821 * 11 10 9 14 14 N 1.31516 * 119.99990 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00068 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46744 * 60.00415 * 15 13 11 17 17 H 1.48499 * 109.47225 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47339 * 300.00421 * 15 13 11 19 19 C 1.46895 * 111.26964 * 296.75625 * 9 8 7 20 20 C 1.47084 * 120.88169 * 187.62758 * 6 4 3 21 21 C 1.37876 * 107.53085 * 180.28062 * 3 2 1 22 22 C 1.39837 * 107.08288 * 359.74112 * 21 3 2 23 23 C 1.35449 * 107.86825 * 359.97438 * 22 21 3 24 24 N 1.48019 * 125.56358 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99866 * 0.03001 * 24 23 22 26 26 O 1.21802 * 120.00393 * 179.74822 * 24 23 22 27 27 H 1.09006 * 109.46787 * 271.50516 * 1 2 3 28 28 H 1.08996 * 109.47220 * 31.49875 * 1 2 3 29 29 H 1.08992 * 109.47021 * 151.50600 * 1 2 3 30 30 H 1.09000 * 109.62947 * 248.52153 * 7 6 4 31 31 H 1.09000 * 109.63061 * 9.11152 * 7 6 4 32 32 H 1.08995 * 109.64744 * 294.07949 * 8 7 6 33 33 H 1.08997 * 109.41644 * 173.94877 * 8 7 6 34 34 H 1.09008 * 109.46932 * 180.54196 * 10 9 8 35 35 H 1.08995 * 109.47560 * 300.54296 * 10 9 8 36 36 H 0.96999 * 119.99697 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.49390 * 303.14135 * 19 9 8 38 38 H 1.09001 * 109.51863 * 183.08160 * 19 9 8 39 39 H 1.09006 * 109.62709 * 350.89719 * 20 6 4 40 40 H 1.08995 * 109.63133 * 111.47334 * 20 6 4 41 41 H 1.07997 * 126.44983 * 179.76016 * 21 3 2 42 42 H 1.08005 * 126.06175 * 180.02562 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1182 0.0000 4 6 1.8124 2.5125 -0.0005 5 8 0.7261 2.7979 0.4678 6 7 2.5971 3.4775 -0.5196 7 6 3.8382 3.1391 -1.2326 8 6 3.8257 3.8596 -2.5903 9 7 3.6059 5.2959 -2.3745 10 6 3.7609 6.0463 -3.6278 11 6 2.7493 5.5596 -4.6331 12 1 2.1067 4.7256 -4.3921 13 6 2.6440 6.1788 -5.8605 14 7 3.4269 7.1940 -6.1541 15 14 1.3905 5.5750 -7.1069 16 1 0.0264 5.6865 -6.5307 17 1 1.4770 6.4028 -8.3367 18 1 1.6712 4.1563 -7.4437 19 6 2.2919 5.5488 -1.7685 20 6 2.2383 4.8973 -0.3826 21 6 3.5780 0.6888 -0.0064 22 6 3.5521 -0.7093 -0.0043 23 6 2.2554 -1.1009 0.0038 24 7 1.7794 -2.5025 0.0081 25 8 2.5824 -3.4184 0.0048 26 8 0.5849 -2.7400 0.0201 27 1 -0.3633 0.0270 1.0274 28 1 -0.3633 0.8762 -0.5369 29 1 -0.3633 -0.9031 -0.4902 30 1 4.6975 3.4677 -0.6482 31 1 3.8885 2.0615 -1.3890 32 1 3.0246 3.4582 -3.2109 33 1 4.7831 3.7091 -3.0892 34 1 3.6024 7.1079 -3.4376 35 1 4.7661 5.8938 -4.0208 36 1 3.3526 7.6299 -7.0174 37 1 1.5120 5.1240 -2.4006 38 1 2.1362 6.6233 -1.6716 39 1 1.2303 4.9827 0.0235 40 1 2.9468 5.3916 0.2820 41 1 4.4583 1.3145 -0.0118 42 1 4.4132 -1.3612 -0.0076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602211148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:49 Heat of formation + Delta-G solvation = 24.036834 kcal Electronic energy + Delta-G solvation = -27661.730310 eV Core-core repulsion = 23646.430600 eV Total energy + Delta-G solvation = -4015.299711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.79362 -42.63473 -40.88522 -39.01875 -37.89762 -36.30040 -34.63061 -34.16144 -32.69189 -31.49149 -30.00922 -28.20645 -27.74202 -26.95902 -24.67998 -24.57697 -23.22324 -22.53695 -21.73740 -20.36172 -19.81916 -19.78383 -18.95793 -18.62145 -18.00802 -17.63452 -17.07284 -16.76372 -16.11547 -15.98865 -15.88588 -15.60452 -15.18079 -15.10291 -14.89717 -14.47815 -14.26515 -13.82618 -13.72893 -13.61954 -13.48167 -12.98949 -12.93422 -12.79890 -12.56767 -12.51250 -12.46542 -12.37995 -12.22871 -11.95982 -11.86801 -11.68881 -11.29111 -10.63816 -10.37979 -10.15259 -9.85303 -9.08032 -8.19883 -6.38527 -1.22764 -0.21234 0.17332 1.07721 1.16928 1.32321 1.33752 1.41043 1.78576 1.88409 2.32482 3.02778 3.06003 3.30636 3.38765 3.52153 3.93914 3.98659 4.03022 4.06949 4.25900 4.28702 4.34654 4.39967 4.50309 4.60772 4.64468 4.72467 4.75637 4.88311 4.92649 5.04700 5.15958 5.20609 5.27642 5.31296 5.36572 5.41260 5.71234 5.96037 6.08657 6.22673 6.37222 6.44557 6.74994 6.81974 7.33131 8.82143 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.003250 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.096414 B = 8614.569743 C = 9213.601688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.395 5.395 3 C 0.025 3.975 4 C 0.581 3.419 5 O -0.569 6.569 6 N -0.586 5.586 7 C 0.098 3.902 8 C 0.046 3.954 9 N -0.532 5.532 10 C 0.201 3.799 11 C -0.558 4.558 12 H 0.049 0.951 13 C 0.018 3.982 14 N -0.921 5.921 15 Si 0.947 3.053 16 H -0.276 1.276 17 H -0.280 1.280 18 H -0.271 1.271 19 C 0.053 3.947 20 C 0.129 3.871 21 C -0.135 4.135 22 C -0.073 4.073 23 C 0.043 3.957 24 N 0.061 4.939 25 O -0.133 6.133 26 O -0.203 6.203 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.013 0.987 33 H 0.088 0.912 34 H 0.010 0.990 35 H 0.013 0.987 36 H 0.266 0.734 37 H 0.012 0.988 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.213 0.787 42 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -13.785 14.391 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.071 5.071 3 C -0.096 4.096 4 C 0.369 3.631 5 O -0.450 6.450 6 N -0.317 5.317 7 C -0.023 4.023 8 C -0.083 4.083 9 N -0.256 5.256 10 C 0.074 3.926 11 C -0.597 4.597 12 H 0.068 0.932 13 C -0.182 4.182 14 N -0.560 5.560 15 Si 0.773 3.227 16 H -0.202 1.202 17 H -0.205 1.205 18 H -0.197 1.197 19 C -0.076 4.076 20 C 0.007 3.993 21 C -0.160 4.160 22 C -0.102 4.102 23 C -0.153 4.153 24 N 0.575 4.425 25 O -0.352 6.352 26 O -0.406 6.406 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.032 0.968 33 H 0.106 0.894 34 H 0.028 0.972 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.230 0.770 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.575 -12.709 14.807 19.576 hybrid contribution -1.888 -0.501 -1.791 2.650 sum -0.313 -13.209 13.016 18.547 Atomic orbital electron populations 1.22656 0.73658 1.06207 1.05887 1.43813 1.08585 1.03071 1.51598 1.20638 0.91402 0.86667 1.10878 1.17005 0.83790 0.83564 0.78729 1.90830 1.21813 1.83320 1.49011 1.47956 1.24322 1.06291 1.53106 1.22889 0.85869 1.01858 0.91690 1.22446 1.01231 0.88450 0.96221 1.62459 1.28391 1.08085 1.26631 1.19424 0.95066 0.92943 0.85130 1.21931 1.20544 1.16233 1.01023 0.93238 1.25683 0.97469 0.94935 1.00106 1.70021 1.39768 1.22837 1.23407 0.85782 0.79630 0.78561 0.78755 1.20158 1.20503 1.19662 1.22225 0.90649 1.00524 0.94209 1.21833 1.02662 0.78299 0.96548 1.22226 0.95399 0.94003 1.04339 1.21364 0.93215 0.96327 0.99255 1.21082 0.91582 0.77479 1.25129 1.42670 1.00603 1.01742 0.97499 1.94563 1.52086 1.35750 1.52774 1.94539 0.99660 1.90271 1.56111 0.88457 0.88805 0.87113 0.86812 0.85993 0.96822 0.89418 0.97205 0.96845 0.92514 0.97003 0.90423 0.89266 0.88078 0.77030 0.77768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.16 9.86 127.77 1.26 2.42 16 2 N -0.39 -8.72 3.16 -522.89 -1.65 -10.37 16 3 C 0.02 0.52 6.39 40.35 0.26 0.77 16 4 C 0.58 15.00 7.44 86.45 0.64 15.64 16 5 O -0.57 -18.03 14.98 -4.32 -0.06 -18.10 16 6 N -0.59 -14.28 3.00 -821.74 -2.47 -16.74 16 7 C 0.10 1.97 5.22 86.51 0.45 2.42 16 8 C 0.05 1.42 5.19 86.54 0.45 1.87 16 9 N -0.53 -19.64 4.83 -898.88 -4.34 -23.98 16 10 C 0.20 9.66 5.11 85.56 0.44 10.09 16 11 C -0.56 -29.33 7.76 25.60 0.20 -29.13 16 12 H 0.05 2.61 5.87 -2.91 -0.02 2.59 16 13 C 0.02 0.99 5.46 84.65 0.46 1.45 16 14 N -0.92 -52.63 13.29 21.45 0.28 -52.35 16 15 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 19 C 0.05 1.84 5.23 86.38 0.45 2.29 16 20 C 0.13 3.39 6.61 86.35 0.57 3.96 16 21 C -0.13 -1.86 8.46 22.57 0.19 -1.67 16 22 C -0.07 -1.05 10.46 22.01 0.23 -0.82 16 23 C 0.04 0.90 7.87 127.91 1.01 1.90 16 24 N 0.06 1.44 4.45 -49.52 -0.22 1.22 16 25 O -0.13 -3.09 19.00 18.88 0.36 -2.73 16 26 O -0.20 -5.19 16.64 18.88 0.31 -4.87 16 27 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.09 2.10 7.16 -2.39 -0.02 2.09 16 29 H 0.11 2.16 6.14 -2.39 -0.01 2.15 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.12 1.85 4.33 -2.39 -0.01 1.84 16 32 H 0.01 0.50 6.68 -2.39 -0.02 0.49 16 33 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 34 H 0.01 0.52 8.09 -2.38 -0.02 0.50 16 35 H 0.01 0.69 8.13 -2.39 -0.02 0.67 16 36 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.01 0.48 7.03 -2.39 -0.02 0.46 16 38 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 39 H 0.09 2.43 7.04 -2.38 -0.02 2.41 16 40 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.21 1.45 6.19 -2.91 -0.02 1.44 16 42 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -67.40 344.92 1.91 -65.49 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.06 Total: 6.35 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 6.61 Total: 11.21 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -8.40 Total: -102.22 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: 0.61 Total: -25.70 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.40 1.91 -65.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602211148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.529 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds