Wall clock time and date at job start Fri Apr 10 2020 18:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.54922 * 2 1 4 4 C 1.53293 * 109.51301 * 239.87849 * 2 1 3 5 5 N 1.47168 * 108.41406 * 187.79067 * 4 2 1 6 6 C 1.34777 * 120.99162 * 230.53008 * 5 4 2 7 7 O 1.21364 * 119.99916 * 172.06053 * 6 5 4 8 8 C 1.49307 * 120.00016 * 352.06030 * 6 5 4 9 9 O 1.21405 * 119.99909 * 353.31268 * 8 6 5 10 10 N 1.34771 * 119.99805 * 173.31151 * 8 6 5 11 11 C 1.40296 * 120.00190 * 179.97438 * 10 8 6 12 12 C 1.40724 * 126.09679 * 359.69491 * 11 10 8 13 13 N 1.30879 * 108.37563 * 179.84842 * 12 11 10 14 14 N 1.40057 * 108.43339 * 0.40925 * 13 12 11 15 15 C 1.37297 * 126.05486 * 179.74112 * 14 13 12 16 16 H 1.08001 * 120.00484 * 179.97438 * 15 14 13 17 17 C 1.39009 * 119.99857 * 359.97438 * 15 14 13 18 18 N 1.31287 * 119.99931 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99943 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47097 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46887 * 120.00456 * 19 17 15 22 22 H 1.48505 * 109.47177 * 239.99927 * 19 17 15 23 23 C 1.35788 * 126.10222 * 180.02562 * 11 10 8 24 24 C 1.47150 * 118.02489 * 50.46856 * 5 4 2 25 25 C 1.53292 * 108.41881 * 309.52781 * 24 5 4 26 26 H 1.08998 * 109.51337 * 292.36101 * 25 24 5 27 27 C 1.52996 * 109.51811 * 172.25622 * 25 24 5 28 28 O 1.42955 * 109.51610 * 120.12590 * 2 1 3 29 29 H 1.08995 * 109.47179 * 299.86785 * 1 2 3 30 30 H 1.08996 * 109.47318 * 59.87080 * 1 2 3 31 31 H 1.08996 * 109.46701 * 179.87347 * 1 2 3 32 32 H 1.08999 * 109.67918 * 307.49282 * 4 2 1 33 33 H 1.08997 * 109.68415 * 68.01077 * 4 2 1 34 34 H 0.96999 * 120.00096 * 0.02562 * 10 8 6 35 35 H 1.08005 * 125.81057 * 359.97438 * 12 11 10 36 36 H 0.97002 * 119.99910 * 180.02562 * 18 17 15 37 37 H 1.07996 * 126.25277 * 0.02562 * 23 11 10 38 38 H 1.09000 * 109.68134 * 189.78227 * 24 5 4 39 39 H 1.09006 * 109.68227 * 69.27297 * 24 5 4 40 40 H 1.09005 * 109.46899 * 60.00065 * 27 25 24 41 41 H 1.08996 * 109.47725 * 179.97438 * 27 25 24 42 42 H 1.08999 * 109.47118 * 300.00701 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0421 -0.7251 -1.2498 5 7 3.5013 -0.8768 -1.1341 6 6 4.3195 -0.5047 -2.1384 7 8 5.5217 -0.5018 -1.9722 8 6 3.7469 -0.0961 -3.4553 9 8 2.5565 -0.2140 -3.6625 10 7 4.5515 0.4037 -4.4141 11 6 4.0137 0.7872 -5.6518 12 6 2.6611 0.7008 -6.0305 13 7 2.5451 1.1543 -7.2527 14 7 3.8139 1.5378 -7.7051 15 6 4.1079 2.0585 -8.9410 16 1 5.1257 2.3223 -9.1877 17 6 3.0955 2.2462 -9.8748 18 7 1.8581 1.9261 -9.5748 19 14 3.4955 2.9540 -11.5566 20 1 4.9522 3.2290 -11.6441 21 1 3.1123 1.9781 -12.6082 22 1 2.7400 4.2171 -11.7545 23 6 4.7062 1.3020 -6.7001 24 6 4.0407 -1.4456 0.1112 25 6 3.4314 -0.6854 1.2947 26 1 3.8031 0.3393 1.2995 27 6 3.8224 -1.3769 2.6023 28 8 2.0076 -0.6763 1.1654 29 1 -0.3633 0.5118 0.8911 30 1 -0.3634 0.5158 -0.8888 31 1 -0.3632 -1.0277 -0.0023 32 1 1.5758 -1.7078 -1.3209 33 1 1.8025 -0.1401 -2.1377 34 1 5.5027 0.4975 -4.2486 35 1 1.8555 0.3262 -5.4163 36 1 1.1517 2.0567 -10.2265 37 1 5.7692 1.4900 -6.7328 38 1 5.1253 -1.3375 0.1246 39 1 3.7763 -2.5010 0.1775 40 1 4.9082 -1.3867 2.6975 41 1 3.3892 -0.8356 3.4433 42 1 3.4489 -2.4009 2.5976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746354380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:05 Heat of formation + Delta-G solvation = -10.264855 kcal Electronic energy + Delta-G solvation = -27197.015610 eV Core-core repulsion = 23180.228467 eV Total energy + Delta-G solvation = -4016.787144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97363 -39.84429 -38.95369 -37.91442 -35.31750 -34.17780 -33.98241 -33.20874 -30.53946 -30.37216 -28.24787 -27.39074 -26.56630 -25.15103 -23.43829 -22.21504 -21.27667 -21.02390 -19.77076 -19.53094 -17.83053 -17.39005 -17.02628 -16.66800 -15.98385 -15.72360 -15.55848 -15.29301 -15.13826 -14.37847 -14.30864 -14.16437 -13.78071 -13.49686 -13.29931 -13.07176 -12.99671 -12.73236 -12.41782 -12.27215 -12.13322 -11.87514 -11.76859 -11.51182 -11.33987 -11.25804 -11.15422 -10.89828 -10.82523 -10.55711 -10.35972 -10.24975 -9.29194 -8.97973 -8.89327 -8.69439 -8.18353 -6.84474 -6.65027 -4.32508 1.53511 2.37273 2.88799 3.01261 3.07222 3.22084 3.37292 3.58285 3.64710 3.80561 4.30305 4.36278 4.48454 4.68840 4.75778 4.79785 4.89643 4.93279 4.93876 5.13437 5.19377 5.28632 5.39290 5.50918 5.60500 5.65651 5.72444 5.82931 5.90561 6.03541 6.11634 6.17808 6.29537 6.68705 6.83830 6.89874 7.00256 7.02844 7.11609 7.61584 7.77193 8.01450 8.12236 8.40688 8.63224 9.25847 9.54318 10.30728 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030096 B = 0.002570 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.142060 B =10891.735316 C =11655.714960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.061 0.939 4 C 0.046 3.954 5 N -0.591 5.591 6 C 0.517 3.483 7 O -0.529 6.529 8 C 0.485 3.515 9 O -0.516 6.516 10 N -0.578 5.578 11 C -0.072 4.072 12 C -0.025 4.025 13 N -0.260 5.260 14 N -0.137 5.137 15 C -0.321 4.321 16 H 0.119 0.881 17 C 0.046 3.954 18 N -0.766 5.766 19 Si 0.936 3.064 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.077 4.077 24 C 0.079 3.921 25 C 0.076 3.924 26 H 0.063 0.937 27 C -0.142 4.142 28 O -0.378 6.378 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.410 0.590 35 H 0.178 0.822 36 H 0.276 0.724 37 H 0.149 0.851 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -3.830 17.679 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.079 0.921 4 C -0.075 4.075 5 N -0.324 5.324 6 C 0.301 3.699 7 O -0.405 6.405 8 C 0.267 3.733 9 O -0.395 6.395 10 N -0.220 5.220 11 C -0.178 4.178 12 C -0.201 4.201 13 N -0.091 5.091 14 N 0.096 4.904 15 C -0.453 4.453 16 H 0.137 0.863 17 C -0.172 4.172 18 N -0.393 5.393 19 Si 0.760 3.240 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.228 4.228 24 C -0.043 4.043 25 C 0.017 3.983 26 H 0.081 0.919 27 C -0.200 4.200 28 O -0.297 6.297 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.168 0.832 34 H 0.245 0.755 35 H 0.195 0.805 36 H 0.086 0.914 37 H 0.167 0.833 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.613 -3.760 16.664 17.094 hybrid contribution 1.484 0.183 -0.060 1.497 sum 2.097 -3.576 16.603 17.113 Atomic orbital electron populations 1.21707 0.91905 1.03299 1.02991 1.22578 0.95840 0.95345 0.84743 0.92062 1.23578 0.78087 1.03839 1.02023 1.47919 1.08018 1.61305 1.15200 1.20267 0.86354 0.77987 0.85296 1.90719 1.14483 1.52898 1.82375 1.19591 0.86834 0.81806 0.85091 1.90407 1.14758 1.55240 1.79106 1.42171 1.11132 1.57124 1.11524 1.17254 0.94030 1.19558 0.86963 1.24150 0.94906 1.05860 0.95148 1.78272 0.99788 1.20907 1.10126 1.44582 1.03767 1.33491 1.08535 1.19988 0.96501 1.41967 0.86871 0.86349 1.25678 0.94660 0.96195 1.00633 1.70214 0.99823 1.34795 1.34434 0.85733 0.79429 0.78813 0.80022 1.18602 1.19833 1.19827 1.21311 0.95834 1.15202 0.90479 1.22451 1.00955 0.97966 0.82970 1.22421 0.81839 0.99144 0.94850 0.91936 1.21720 1.01598 1.01352 0.95298 1.87942 1.20379 1.77559 1.43868 0.91631 0.90229 0.91539 0.90495 0.83164 0.75525 0.80503 0.91355 0.83323 0.87973 0.90283 0.90728 0.91376 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.57 37.16 0.36 -0.93 16 2 C 0.07 0.80 3.40 -26.58 -0.09 0.71 16 3 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 4 C 0.05 0.58 5.42 -3.53 -0.02 0.56 16 5 N -0.59 -7.92 3.02 -172.83 -0.52 -8.45 16 6 C 0.52 8.14 7.75 -11.65 -0.09 8.05 16 7 O -0.53 -8.87 15.97 5.48 0.09 -8.78 16 8 C 0.49 8.62 7.71 -11.66 -0.09 8.53 16 9 O -0.52 -9.81 10.36 5.45 0.06 -9.76 16 10 N -0.58 -10.67 5.45 -10.46 -0.06 -10.73 16 11 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 12 C -0.02 -0.62 10.85 -17.02 -0.18 -0.81 16 13 N -0.26 -7.30 10.39 30.81 0.32 -6.98 16 14 N -0.14 -3.66 3.73 -11.40 -0.04 -3.70 16 15 C -0.32 -8.25 10.25 -14.82 -0.15 -8.41 16 16 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 17 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 18 N -0.77 -20.79 11.81 55.50 0.66 -20.13 16 19 Si 0.94 18.42 29.55 -169.99 -5.02 13.40 16 20 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.08 -1.77 11.50 -16.38 -0.19 -1.95 16 24 C 0.08 0.86 5.94 -3.54 -0.02 0.84 16 25 C 0.08 0.74 3.40 -26.58 -0.09 0.65 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 C -0.14 -1.01 9.57 37.16 0.36 -0.65 16 28 O -0.38 -4.27 10.03 -35.23 -0.35 -4.62 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.15 2.17 4.50 -53.94 -0.24 1.92 16 34 H 0.41 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.18 4.25 5.92 -52.48 -0.31 3.94 16 36 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 38 H 0.10 1.11 7.06 -51.93 -0.37 0.75 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -31.42 350.77 -5.94 -37.36 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.46 Total: 11.66 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.89 Total: 5.44 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.35 Total: -49.98 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.21 Total: -23.15 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.42 -5.94 -37.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746354380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.091 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds