Wall clock time and date at job start Fri Apr 10 2020 18:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.54922 * 2 1 4 4 C 1.53293 * 109.51301 * 239.87849 * 2 1 3 5 5 N 1.47168 * 108.41406 * 187.79067 * 4 2 1 6 6 C 1.34777 * 120.99162 * 230.53008 * 5 4 2 7 7 O 1.21364 * 119.99916 * 172.06053 * 6 5 4 8 8 C 1.49307 * 120.00016 * 352.06030 * 6 5 4 9 9 O 1.21405 * 119.99909 * 353.31268 * 8 6 5 10 10 N 1.34771 * 119.99805 * 173.31151 * 8 6 5 11 11 C 1.40296 * 120.00190 * 179.97438 * 10 8 6 12 12 C 1.40724 * 126.09679 * 359.69491 * 11 10 8 13 13 N 1.30879 * 108.37563 * 179.84842 * 12 11 10 14 14 N 1.40057 * 108.43339 * 0.40925 * 13 12 11 15 15 C 1.37297 * 126.05486 * 179.74112 * 14 13 12 16 16 H 1.08001 * 120.00484 * 179.97438 * 15 14 13 17 17 C 1.39009 * 119.99857 * 359.97438 * 15 14 13 18 18 N 1.31287 * 119.99931 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99943 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47097 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46887 * 120.00456 * 19 17 15 22 22 H 1.48505 * 109.47177 * 239.99927 * 19 17 15 23 23 C 1.35788 * 126.10222 * 180.02562 * 11 10 8 24 24 C 1.47150 * 118.02489 * 50.46856 * 5 4 2 25 25 C 1.53292 * 108.41881 * 309.52781 * 24 5 4 26 26 H 1.08998 * 109.51337 * 292.36101 * 25 24 5 27 27 C 1.52996 * 109.51811 * 172.25622 * 25 24 5 28 28 O 1.42955 * 109.51610 * 120.12590 * 2 1 3 29 29 H 1.08995 * 109.47179 * 299.86785 * 1 2 3 30 30 H 1.08996 * 109.47318 * 59.87080 * 1 2 3 31 31 H 1.08996 * 109.46701 * 179.87347 * 1 2 3 32 32 H 1.08999 * 109.67918 * 307.49282 * 4 2 1 33 33 H 1.08997 * 109.68415 * 68.01077 * 4 2 1 34 34 H 0.96999 * 120.00096 * 0.02562 * 10 8 6 35 35 H 1.08005 * 125.81057 * 359.97438 * 12 11 10 36 36 H 0.97002 * 119.99910 * 180.02562 * 18 17 15 37 37 H 1.07996 * 126.25277 * 0.02562 * 23 11 10 38 38 H 1.09000 * 109.68134 * 189.78227 * 24 5 4 39 39 H 1.09006 * 109.68227 * 69.27297 * 24 5 4 40 40 H 1.09005 * 109.46899 * 60.00065 * 27 25 24 41 41 H 1.08996 * 109.47725 * 179.97438 * 27 25 24 42 42 H 1.08999 * 109.47118 * 300.00701 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0421 -0.7251 -1.2498 5 7 3.5013 -0.8768 -1.1341 6 6 4.3195 -0.5047 -2.1384 7 8 5.5217 -0.5018 -1.9722 8 6 3.7469 -0.0961 -3.4553 9 8 2.5565 -0.2140 -3.6625 10 7 4.5515 0.4037 -4.4141 11 6 4.0137 0.7872 -5.6518 12 6 2.6611 0.7008 -6.0305 13 7 2.5451 1.1543 -7.2527 14 7 3.8139 1.5378 -7.7051 15 6 4.1079 2.0585 -8.9410 16 1 5.1257 2.3223 -9.1877 17 6 3.0955 2.2462 -9.8748 18 7 1.8581 1.9261 -9.5748 19 14 3.4955 2.9540 -11.5566 20 1 4.9522 3.2290 -11.6441 21 1 3.1123 1.9781 -12.6082 22 1 2.7400 4.2171 -11.7545 23 6 4.7062 1.3020 -6.7001 24 6 4.0407 -1.4456 0.1112 25 6 3.4314 -0.6854 1.2947 26 1 3.8031 0.3393 1.2995 27 6 3.8224 -1.3769 2.6023 28 8 2.0076 -0.6763 1.1654 29 1 -0.3633 0.5118 0.8911 30 1 -0.3634 0.5158 -0.8888 31 1 -0.3632 -1.0277 -0.0023 32 1 1.5758 -1.7078 -1.3209 33 1 1.8025 -0.1401 -2.1377 34 1 5.5027 0.4975 -4.2486 35 1 1.8555 0.3262 -5.4163 36 1 1.1517 2.0567 -10.2265 37 1 5.7692 1.4900 -6.7328 38 1 5.1253 -1.3375 0.1246 39 1 3.7763 -2.5010 0.1775 40 1 4.9082 -1.3867 2.6975 41 1 3.3892 -0.8356 3.4433 42 1 3.4489 -2.4009 2.5976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746354380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:04 Heat of formation + Delta-G solvation = -32.329864 kcal Electronic energy + Delta-G solvation = -27197.972421 eV Core-core repulsion = 23180.228467 eV Total energy + Delta-G solvation = -4017.743954 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30287 -41.46547 -40.20601 -39.27248 -36.62061 -35.63698 -34.94598 -34.80876 -32.30420 -31.34553 -29.95913 -28.41563 -27.66112 -26.86879 -24.77959 -23.11210 -22.86397 -22.19157 -21.38334 -21.02329 -19.46859 -18.79687 -18.14596 -17.66742 -17.45921 -17.23572 -16.90310 -16.55789 -16.48116 -15.72734 -15.69421 -15.24380 -15.17653 -15.02276 -14.87448 -14.41019 -14.05987 -13.54181 -13.50587 -13.37913 -13.15132 -13.08037 -12.94773 -12.87409 -12.77506 -12.64352 -12.34515 -12.04189 -12.03073 -11.99794 -11.74030 -11.20734 -11.09234 -10.87543 -10.28240 -10.14769 -9.76649 -8.64183 -8.49660 -6.27166 0.16772 1.12494 1.27328 1.41503 1.59795 1.69183 1.96457 2.08275 2.32034 2.48674 2.61184 2.80373 3.07053 3.33335 3.55759 3.82162 3.93352 4.01087 4.03280 4.34356 4.38295 4.38994 4.46321 4.50977 4.64757 4.72913 4.79465 4.92755 4.94366 4.96697 4.97527 5.00689 5.05706 5.25012 5.25988 5.30777 5.37667 5.82235 5.91123 6.14952 6.16617 6.33665 6.60822 6.69610 7.00893 7.40126 7.62180 8.49620 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030096 B = 0.002570 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.142060 B =10891.735316 C =11655.714960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 H 0.058 0.942 4 C 0.047 3.953 5 N -0.585 5.585 6 C 0.523 3.477 7 O -0.539 6.539 8 C 0.487 3.513 9 O -0.528 6.528 10 N -0.578 5.578 11 C -0.058 4.058 12 C -0.044 4.044 13 N -0.307 5.307 14 N -0.163 5.163 15 C -0.352 4.352 16 H 0.141 0.859 17 C -0.005 4.005 18 N -0.820 5.820 19 Si 1.019 2.981 20 H -0.242 1.242 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.074 4.074 24 C 0.076 3.924 25 C 0.074 3.926 26 H 0.059 0.941 27 C -0.137 4.137 28 O -0.384 6.384 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.423 0.577 35 H 0.179 0.821 36 H 0.278 0.722 37 H 0.187 0.813 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -3.946 18.914 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.018 3.982 3 H 0.076 0.924 4 C -0.075 4.075 5 N -0.317 5.317 6 C 0.306 3.694 7 O -0.416 6.416 8 C 0.270 3.730 9 O -0.407 6.407 10 N -0.222 5.222 11 C -0.164 4.164 12 C -0.220 4.220 13 N -0.139 5.139 14 N 0.069 4.931 15 C -0.483 4.483 16 H 0.159 0.841 17 C -0.217 4.217 18 N -0.447 5.447 19 Si 0.838 3.162 20 H -0.165 1.165 21 H -0.198 1.198 22 H -0.197 1.197 23 C -0.225 4.225 24 C -0.045 4.045 25 C 0.016 3.984 26 H 0.077 0.923 27 C -0.194 4.194 28 O -0.304 6.304 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.150 0.850 34 H 0.260 0.740 35 H 0.196 0.804 36 H 0.088 0.912 37 H 0.204 0.796 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.093 -3.893 17.960 18.495 hybrid contribution 1.025 0.132 -0.209 1.054 sum 3.118 -3.761 17.751 18.411 Atomic orbital electron populations 1.21706 0.90521 1.03746 1.03607 1.22559 0.96921 0.94772 0.83940 0.92434 1.23539 0.77682 1.04010 1.02255 1.48043 1.08237 1.60092 1.15371 1.19758 0.86298 0.78549 0.84843 1.90720 1.14679 1.53836 1.82407 1.20119 0.86594 0.80579 0.85743 1.90432 1.15534 1.55082 1.79635 1.42097 1.11921 1.57798 1.10394 1.17273 0.93012 1.17924 0.88214 1.24289 0.96340 1.06481 0.94884 1.78167 1.01686 1.22471 1.11540 1.44844 1.03811 1.34780 1.09650 1.20681 0.97884 1.42615 0.87123 0.84147 1.26865 0.94119 0.95885 1.04816 1.70375 1.01237 1.36939 1.36189 0.84538 0.80139 0.77567 0.74001 1.16478 1.19760 1.19694 1.22001 0.97258 1.13674 0.89614 1.22706 1.01180 0.98718 0.81883 1.22576 0.81021 0.99199 0.95615 0.92274 1.21728 1.02769 1.01203 0.93697 1.87953 1.21300 1.77493 1.43612 0.90631 0.90022 0.91176 0.89935 0.85025 0.73954 0.80406 0.91226 0.79600 0.87698 0.88947 0.89015 0.90908 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.57 71.98 0.69 -1.65 16 2 C 0.08 1.58 3.40 30.69 0.10 1.69 16 3 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 4 C 0.05 1.13 5.42 86.35 0.47 1.60 16 5 N -0.58 -14.90 3.02 -819.07 -2.48 -17.37 16 6 C 0.52 15.85 7.75 87.22 0.68 16.52 16 7 O -0.54 -17.23 15.97 -3.29 -0.05 -17.28 16 8 C 0.49 17.09 7.71 87.23 0.67 17.76 16 9 O -0.53 -20.21 10.36 -3.42 -0.04 -20.25 16 10 N -0.58 -20.91 5.45 -305.33 -1.66 -22.57 16 11 C -0.06 -2.60 6.90 37.82 0.26 -2.34 16 12 C -0.04 -2.29 10.85 85.44 0.93 -1.36 16 13 N -0.31 -17.83 10.39 -56.43 -0.59 -18.42 16 14 N -0.16 -8.82 3.73 -189.98 -0.71 -9.53 16 15 C -0.35 -18.19 10.25 84.02 0.86 -17.33 16 16 H 0.14 6.32 7.83 -2.91 -0.02 6.29 16 17 C 0.00 -0.24 5.50 84.96 0.47 0.23 16 18 N -0.82 -45.99 11.81 21.67 0.26 -45.74 16 19 Si 1.02 37.67 29.55 68.60 2.03 39.70 16 20 H -0.24 -8.05 7.11 99.48 0.71 -7.34 16 21 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 22 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 23 C -0.07 -3.39 11.50 83.41 0.96 -2.44 16 24 C 0.08 1.50 5.94 86.35 0.51 2.02 16 25 C 0.07 1.29 3.40 30.69 0.10 1.40 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 C -0.14 -1.57 9.57 71.98 0.69 -0.88 16 28 O -0.38 -7.92 10.03 -148.98 -1.49 -9.41 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.13 3.79 4.50 -34.20 -0.15 3.64 16 34 H 0.42 12.94 8.31 -92.71 -0.77 12.17 16 35 H 0.18 8.88 5.92 -2.91 -0.02 8.86 16 36 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 38 H 0.10 2.05 7.06 -2.39 -0.02 2.03 16 39 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -69.38 350.77 2.81 -66.57 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: 0.15 Total: 39.10 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 7.39 Total: 15.21 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -5.18 Total: -113.64 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.58 Total: -46.94 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -69.38 2.81 -66.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746354380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.237 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds