Wall clock time and date at job start Fri Apr 10 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.54873 * 2 1 4 4 O 1.42954 * 109.51422 * 239.86930 * 2 1 3 5 5 C 1.42962 * 114.16816 * 177.49565 * 4 2 1 6 6 C 1.53297 * 109.22192 * 62.57932 * 5 4 2 7 7 N 1.47153 * 108.38466 * 307.70089 * 6 5 4 8 8 C 1.34771 * 120.98133 * 230.55666 * 7 6 5 9 9 O 1.21364 * 120.00350 * 173.05179 * 8 7 6 10 10 C 1.49311 * 120.00230 * 353.04921 * 8 7 6 11 11 O 1.21406 * 119.99806 * 353.64003 * 10 8 7 12 12 N 1.34777 * 120.00332 * 173.63522 * 10 8 7 13 13 C 1.40291 * 119.99904 * 180.02562 * 12 10 8 14 14 C 1.40724 * 126.10320 * 0.02895 * 13 12 10 15 15 N 1.30870 * 108.37628 * 179.97438 * 14 13 12 16 16 N 1.40064 * 108.43884 * 0.02562 * 15 14 13 17 17 C 1.37296 * 126.06031 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00220 * 179.97438 * 17 16 15 19 19 C 1.39015 * 119.99486 * 359.97269 * 17 16 15 20 20 N 1.31282 * 120.00091 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47286 * 89.99904 * 21 19 17 23 23 H 1.48502 * 109.46992 * 209.99846 * 21 19 17 24 24 H 1.48503 * 109.47314 * 329.99574 * 21 19 17 25 25 C 1.35785 * 126.09596 * 179.71279 * 13 12 10 26 26 C 1.47146 * 118.03479 * 50.53400 * 7 6 5 27 27 H 1.09008 * 109.68018 * 69.19030 * 26 7 6 28 28 C 1.53003 * 109.68172 * 189.70124 * 26 7 6 29 29 H 1.08999 * 109.46616 * 180.12646 * 1 2 3 30 30 H 1.08993 * 109.47444 * 300.12994 * 1 2 3 31 31 H 1.09001 * 109.46538 * 60.13316 * 1 2 3 32 32 H 1.08999 * 109.51536 * 182.50623 * 5 4 2 33 33 H 1.09004 * 109.51017 * 302.60910 * 5 4 2 34 34 H 1.09000 * 109.68011 * 67.42712 * 6 5 4 35 35 H 1.09005 * 109.67920 * 187.94111 * 6 5 4 36 36 H 0.96996 * 119.99671 * 0.02562 * 12 10 8 37 37 H 1.07997 * 125.80928 * 359.97438 * 14 13 12 38 38 H 0.96995 * 119.99726 * 180.02562 * 20 19 17 39 39 H 1.08002 * 126.25389 * 359.97438 * 25 13 12 40 40 H 1.09003 * 109.46632 * 54.19077 * 28 26 7 41 41 H 1.09003 * 109.47605 * 174.19207 * 28 26 7 42 42 H 1.09003 * 109.47357 * 294.19364 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 8 2.0076 -0.6764 -1.1654 5 6 3.4313 -0.6855 -1.2947 6 6 4.0407 -1.4458 -0.1111 7 7 3.5012 -0.8761 1.1338 8 6 4.3193 -0.5032 2.1377 9 8 3.8693 0.0792 3.1028 10 6 5.7793 -0.8066 2.0629 11 8 6.2119 -1.4884 1.1563 12 7 6.6170 -0.3234 3.0017 13 6 7.9889 -0.6081 2.9310 14 6 8.6258 -1.3797 1.9413 15 7 9.9059 -1.4207 2.2104 16 7 10.1372 -0.6812 3.3772 17 6 11.3541 -0.4862 3.9824 18 1 11.4203 0.1049 4.8838 19 6 12.5009 -1.0497 3.4349 20 7 12.4204 -1.7679 2.3389 21 14 14.1564 -0.7850 4.2587 22 1 14.3963 -1.8673 5.2468 23 1 15.2291 -0.8053 3.2320 24 1 14.1599 0.5282 4.9522 25 6 8.9400 -0.1832 3.8020 26 6 2.0421 -0.7251 1.2498 27 1 1.5758 -1.7079 1.3209 28 6 1.7065 0.0957 2.4966 29 1 -0.3632 -1.0277 0.0023 30 1 -0.3634 0.5158 0.8887 31 1 -0.3632 0.5118 -0.8912 32 1 3.7092 -1.1787 -2.2261 33 1 3.8030 0.3392 -1.3003 34 1 3.7758 -2.5010 -0.1771 35 1 5.1253 -1.3380 -0.1250 36 1 6.2713 0.2210 3.7261 37 1 8.1407 -1.8567 1.1026 38 1 13.2206 -2.1613 1.9571 39 1 8.7782 0.4343 4.6731 40 1 2.2494 1.0405 2.4665 41 1 0.6348 0.2933 2.5241 42 1 1.9962 -0.4616 3.3874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784816760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:25 Heat of formation + Delta-G solvation = 6.912786 kcal Electronic energy + Delta-G solvation = -27441.612399 eV Core-core repulsion = 23425.570133 eV Total energy + Delta-G solvation = -4016.042265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15964 -39.89110 -38.90031 -37.99529 -35.35137 -34.38640 -33.85616 -33.20028 -30.38434 -29.40907 -28.96025 -28.01189 -25.68822 -24.90245 -23.46899 -23.01334 -21.39304 -20.95875 -19.66042 -19.49345 -17.81599 -17.37740 -16.68579 -16.50862 -16.10114 -15.71460 -15.48710 -15.37361 -15.16921 -14.69767 -14.32048 -14.17891 -13.75487 -13.44150 -13.21908 -13.14451 -13.09054 -12.95703 -12.50666 -12.19975 -12.00912 -11.77239 -11.74937 -11.48103 -11.32343 -11.27316 -11.06265 -10.84883 -10.58508 -10.42803 -10.31833 -10.23224 -9.27955 -8.94767 -8.76216 -8.55328 -8.18324 -6.84239 -6.64796 -4.32394 1.55483 2.36947 2.89842 3.01049 3.06098 3.23690 3.45043 3.60606 3.65168 3.81095 4.30723 4.33929 4.48016 4.70082 4.73668 4.85398 4.90906 4.93976 5.01469 5.09160 5.19358 5.29230 5.36327 5.57562 5.60007 5.66629 5.79968 5.93576 5.95952 6.06544 6.15993 6.29769 6.39195 6.69665 6.83716 6.89085 6.97295 7.06752 7.11866 7.64881 7.78005 8.03520 8.12619 8.41788 8.63621 9.25967 9.54466 10.30925 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036030 B = 0.002553 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.937697 B =10966.804722 C =11584.822482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 H 0.063 0.937 4 O -0.381 6.381 5 C 0.047 3.953 6 C 0.037 3.963 7 N -0.586 5.586 8 C 0.518 3.482 9 O -0.521 6.521 10 C 0.482 3.518 11 O -0.517 6.517 12 N -0.578 5.578 13 C -0.072 4.072 14 C -0.025 4.025 15 N -0.260 5.260 16 N -0.137 5.137 17 C -0.321 4.321 18 H 0.118 0.882 19 C 0.046 3.954 20 N -0.767 5.767 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.263 1.263 25 C -0.077 4.077 26 C 0.112 3.888 27 H 0.082 0.918 28 C -0.140 4.140 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.409 0.591 37 H 0.178 0.822 38 H 0.276 0.724 39 H 0.149 0.851 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.952 3.520 -2.834 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.019 3.981 3 H 0.081 0.919 4 O -0.300 6.300 5 C -0.030 4.030 6 C -0.084 4.084 7 N -0.321 5.321 8 C 0.301 3.699 9 O -0.398 6.398 10 C 0.264 3.736 11 O -0.397 6.397 12 N -0.220 5.220 13 C -0.178 4.178 14 C -0.201 4.201 15 N -0.091 5.091 16 N 0.096 4.904 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.171 4.171 20 N -0.393 5.393 21 Si 0.760 3.240 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.229 4.229 26 C 0.009 3.991 27 H 0.100 0.900 28 C -0.197 4.197 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.245 0.755 37 H 0.195 0.805 38 H 0.087 0.913 39 H 0.167 0.833 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.709 2.691 -3.603 17.304 hybrid contribution -0.142 0.716 1.135 1.349 sum -16.851 3.407 -2.468 17.369 Atomic orbital electron populations 1.21791 0.92207 1.03243 1.02891 1.22534 0.95601 0.95336 0.84670 0.91882 1.87938 1.21523 1.77410 1.43113 1.23084 0.80564 1.00384 0.98948 1.23586 1.05252 0.97851 0.81744 1.47969 1.06086 1.61517 1.16521 1.20209 0.87513 0.79303 0.82835 1.90777 1.76192 1.39923 1.32882 1.19765 0.86609 0.83243 0.83953 1.90377 1.76590 1.39255 1.33456 1.42167 1.05576 1.48130 1.26093 1.17252 0.81490 1.14980 1.04077 1.24145 0.91671 1.03325 1.00944 1.78269 1.13656 1.16919 1.00270 1.44576 1.04357 1.26838 1.14598 1.19937 0.81031 1.34399 1.10006 0.86402 1.25675 1.00593 0.95152 0.95725 1.70201 1.30229 1.23329 1.15529 0.85798 0.79707 0.79500 0.79008 1.19499 1.20010 1.18721 1.21311 0.86109 1.11463 1.03981 1.22130 0.79487 1.00523 0.96960 0.90002 1.22239 0.99810 1.01425 0.96225 0.91559 0.90513 0.91438 0.87349 0.92725 0.90545 0.82858 0.75544 0.80521 0.91302 0.83346 0.90853 0.93041 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.38 37.16 0.35 -0.72 16 2 C 0.08 0.77 2.85 -26.57 -0.08 0.69 16 3 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 4 O -0.38 -4.31 10.38 -35.23 -0.37 -4.68 16 5 C 0.05 0.50 6.99 37.31 0.26 0.76 16 6 C 0.04 0.45 6.16 -3.53 -0.02 0.43 16 7 N -0.59 -7.70 3.02 -165.30 -0.50 -8.20 16 8 C 0.52 7.85 7.67 -11.65 -0.09 7.76 16 9 O -0.52 -8.11 12.04 5.48 0.07 -8.04 16 10 C 0.48 8.43 7.72 -11.65 -0.09 8.34 16 11 O -0.52 -9.78 10.32 5.45 0.06 -9.72 16 12 N -0.58 -10.54 5.45 -10.45 -0.06 -10.59 16 13 C -0.07 -1.62 6.90 -83.92 -0.58 -2.19 16 14 C -0.03 -0.63 10.85 -17.02 -0.18 -0.81 16 15 N -0.26 -7.31 10.39 30.81 0.32 -6.99 16 16 N -0.14 -3.66 3.73 -11.40 -0.04 -3.70 16 17 C -0.32 -8.27 10.25 -14.82 -0.15 -8.42 16 18 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 19 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 20 N -0.77 -20.82 11.81 55.50 0.66 -20.17 16 21 Si 0.94 18.42 29.55 -169.99 -5.02 13.40 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 25 C -0.08 -1.77 11.50 -16.38 -0.19 -1.96 16 26 C 0.11 1.23 3.12 -67.42 -0.21 1.02 16 27 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 28 C -0.14 -1.50 7.52 37.16 0.28 -1.22 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.46 6.62 -51.93 -0.34 0.12 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.15 2.17 4.42 -54.38 -0.24 1.93 16 36 H 0.41 6.43 8.31 -40.82 -0.34 6.09 16 37 H 0.18 4.25 5.92 -52.49 -0.31 3.94 16 38 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 40 H 0.07 0.89 6.82 -51.93 -0.35 0.54 16 41 H 0.05 0.42 6.52 -51.93 -0.34 0.08 16 42 H 0.08 0.96 6.77 -51.93 -0.35 0.60 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -30.97 340.95 -5.76 -36.73 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -5.21 Total: 12.08 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -0.80 Total: 4.76 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.38 Total: -49.65 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.24 Total: -22.44 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.97 -5.76 -36.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784816760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.641 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds