Wall clock time and date at job start Fri Apr 10 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.54873 * 2 1 4 4 O 1.42954 * 109.51422 * 239.86930 * 2 1 3 5 5 C 1.42962 * 114.16816 * 177.49565 * 4 2 1 6 6 C 1.53297 * 109.22192 * 62.57932 * 5 4 2 7 7 N 1.47153 * 108.38466 * 307.70089 * 6 5 4 8 8 C 1.34771 * 120.98133 * 230.55666 * 7 6 5 9 9 O 1.21364 * 120.00350 * 173.05179 * 8 7 6 10 10 C 1.49311 * 120.00230 * 353.04921 * 8 7 6 11 11 O 1.21406 * 119.99806 * 353.64003 * 10 8 7 12 12 N 1.34777 * 120.00332 * 173.63522 * 10 8 7 13 13 C 1.40291 * 119.99904 * 180.02562 * 12 10 8 14 14 C 1.40724 * 126.10320 * 0.02895 * 13 12 10 15 15 N 1.30870 * 108.37628 * 179.97438 * 14 13 12 16 16 N 1.40064 * 108.43884 * 0.02562 * 15 14 13 17 17 C 1.37296 * 126.06031 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00220 * 179.97438 * 17 16 15 19 19 C 1.39015 * 119.99486 * 359.97269 * 17 16 15 20 20 N 1.31282 * 120.00091 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47286 * 89.99904 * 21 19 17 23 23 H 1.48502 * 109.46992 * 209.99846 * 21 19 17 24 24 H 1.48503 * 109.47314 * 329.99574 * 21 19 17 25 25 C 1.35785 * 126.09596 * 179.71279 * 13 12 10 26 26 C 1.47146 * 118.03479 * 50.53400 * 7 6 5 27 27 H 1.09008 * 109.68018 * 69.19030 * 26 7 6 28 28 C 1.53003 * 109.68172 * 189.70124 * 26 7 6 29 29 H 1.08999 * 109.46616 * 180.12646 * 1 2 3 30 30 H 1.08993 * 109.47444 * 300.12994 * 1 2 3 31 31 H 1.09001 * 109.46538 * 60.13316 * 1 2 3 32 32 H 1.08999 * 109.51536 * 182.50623 * 5 4 2 33 33 H 1.09004 * 109.51017 * 302.60910 * 5 4 2 34 34 H 1.09000 * 109.68011 * 67.42712 * 6 5 4 35 35 H 1.09005 * 109.67920 * 187.94111 * 6 5 4 36 36 H 0.96996 * 119.99671 * 0.02562 * 12 10 8 37 37 H 1.07997 * 125.80928 * 359.97438 * 14 13 12 38 38 H 0.96995 * 119.99726 * 180.02562 * 20 19 17 39 39 H 1.08002 * 126.25389 * 359.97438 * 25 13 12 40 40 H 1.09003 * 109.46632 * 54.19077 * 28 26 7 41 41 H 1.09003 * 109.47605 * 174.19207 * 28 26 7 42 42 H 1.09003 * 109.47357 * 294.19364 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 8 2.0076 -0.6764 -1.1654 5 6 3.4313 -0.6855 -1.2947 6 6 4.0407 -1.4458 -0.1111 7 7 3.5012 -0.8761 1.1338 8 6 4.3193 -0.5032 2.1377 9 8 3.8693 0.0792 3.1028 10 6 5.7793 -0.8066 2.0629 11 8 6.2119 -1.4884 1.1563 12 7 6.6170 -0.3234 3.0017 13 6 7.9889 -0.6081 2.9310 14 6 8.6258 -1.3797 1.9413 15 7 9.9059 -1.4207 2.2104 16 7 10.1372 -0.6812 3.3772 17 6 11.3541 -0.4862 3.9824 18 1 11.4203 0.1049 4.8838 19 6 12.5009 -1.0497 3.4349 20 7 12.4204 -1.7679 2.3389 21 14 14.1564 -0.7850 4.2587 22 1 14.3963 -1.8673 5.2468 23 1 15.2291 -0.8053 3.2320 24 1 14.1599 0.5282 4.9522 25 6 8.9400 -0.1832 3.8020 26 6 2.0421 -0.7251 1.2498 27 1 1.5758 -1.7079 1.3209 28 6 1.7065 0.0957 2.4966 29 1 -0.3632 -1.0277 0.0023 30 1 -0.3634 0.5158 0.8887 31 1 -0.3632 0.5118 -0.8912 32 1 3.7092 -1.1787 -2.2261 33 1 3.8030 0.3392 -1.3003 34 1 3.7758 -2.5010 -0.1771 35 1 5.1253 -1.3380 -0.1250 36 1 6.2713 0.2210 3.7261 37 1 8.1407 -1.8567 1.1026 38 1 13.2206 -2.1613 1.9571 39 1 8.7782 0.4343 4.6731 40 1 2.2494 1.0405 2.4665 41 1 0.6348 0.2933 2.5241 42 1 1.9962 -0.4616 3.3874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784816760.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:24 Heat of formation + Delta-G solvation = -15.136281 kcal Electronic energy + Delta-G solvation = -27442.568518 eV Core-core repulsion = 23425.570133 eV Total energy + Delta-G solvation = -4016.998384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.39848 -41.54214 -40.19775 -39.25979 -36.61086 -35.71951 -35.02798 -34.75581 -32.30392 -30.36432 -29.91227 -29.66006 -27.23344 -26.20872 -24.69528 -23.95056 -22.95893 -22.23805 -21.35993 -20.86133 -19.44936 -18.68689 -17.73720 -17.63735 -17.44605 -17.24299 -16.81628 -16.66520 -16.40131 -15.79917 -15.70130 -15.53243 -15.22158 -14.95918 -14.85890 -14.35192 -14.03052 -13.90776 -13.52045 -13.45220 -13.27657 -12.96850 -12.94537 -12.92468 -12.73001 -12.52121 -12.10367 -12.09124 -11.99299 -11.81038 -11.47289 -11.24312 -11.06812 -10.87088 -10.14866 -9.97582 -9.64077 -8.63510 -8.49609 -6.27183 0.21925 1.15418 1.28633 1.41174 1.58157 1.70779 1.99440 2.08863 2.34000 2.50445 2.71471 2.82291 3.07035 3.35973 3.54716 3.83687 3.93016 3.98899 4.13812 4.24985 4.38581 4.39576 4.48549 4.51520 4.67431 4.77167 4.85847 4.91099 4.93701 4.96655 4.97677 5.01245 5.07657 5.25122 5.32507 5.37562 5.48631 5.89704 5.92493 6.11089 6.18492 6.36527 6.65671 6.72941 7.04250 7.40256 7.62325 8.49521 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.036030 B = 0.002553 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.937697 B =10966.804722 C =11584.822482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.060 0.940 4 O -0.389 6.389 5 C 0.052 3.948 6 C 0.037 3.963 7 N -0.582 5.582 8 C 0.523 3.477 9 O -0.525 6.525 10 C 0.484 3.516 11 O -0.531 6.531 12 N -0.579 5.579 13 C -0.057 4.057 14 C -0.045 4.045 15 N -0.308 5.308 16 N -0.163 5.163 17 C -0.353 4.353 18 H 0.141 0.859 19 C -0.005 4.005 20 N -0.820 5.820 21 Si 1.019 2.981 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.245 1.245 25 C -0.075 4.075 26 C 0.108 3.892 27 H 0.091 0.909 28 C -0.133 4.133 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.423 0.577 37 H 0.179 0.821 38 H 0.278 0.722 39 H 0.187 0.813 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.687 4.563 -2.013 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 H 0.078 0.922 4 O -0.308 6.308 5 C -0.025 4.025 6 C -0.085 4.085 7 N -0.316 5.316 8 C 0.305 3.695 9 O -0.402 6.402 10 C 0.267 3.733 11 O -0.410 6.410 12 N -0.223 5.223 13 C -0.164 4.164 14 C -0.221 4.221 15 N -0.139 5.139 16 N 0.069 4.931 17 C -0.484 4.484 18 H 0.158 0.842 19 C -0.217 4.217 20 N -0.448 5.448 21 Si 0.837 3.163 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.168 1.168 25 C -0.226 4.226 26 C 0.006 3.994 27 H 0.109 0.891 28 C -0.190 4.190 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.260 0.740 37 H 0.195 0.805 38 H 0.088 0.912 39 H 0.204 0.796 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.507 3.747 -2.784 19.087 hybrid contribution 0.149 0.387 0.813 0.913 sum -18.359 4.134 -1.970 18.921 Atomic orbital electron populations 1.21814 0.89969 1.03860 1.04040 1.22668 0.97269 0.94725 0.83576 0.92225 1.87944 1.21585 1.77587 1.43654 1.23101 0.80346 1.00258 0.98835 1.23536 1.04218 0.98530 0.82169 1.48093 1.07062 1.60421 1.16019 1.19704 0.86331 0.79949 0.83497 1.90795 1.75802 1.40383 1.33212 1.20382 0.87792 0.82122 0.83052 1.90403 1.77400 1.39396 1.33823 1.42098 1.03997 1.49026 1.27147 1.17276 0.83306 1.13162 1.02608 1.24280 0.91522 1.04383 1.01906 1.78162 1.15184 1.18646 1.01935 1.44840 1.05648 1.27832 1.14791 1.20642 0.81345 1.35351 1.11060 0.84156 1.26869 1.04684 0.94138 0.95989 1.70368 1.31452 1.25231 1.17735 0.84595 0.73805 0.80138 0.77714 1.18924 1.20104 1.16814 1.22003 0.85149 1.10750 1.04706 1.22381 0.77732 1.01341 0.97903 0.89099 1.22132 1.01587 1.00138 0.95143 0.91195 0.88803 0.90891 0.85376 0.92816 0.89995 0.84783 0.73952 0.80470 0.91226 0.79618 0.92354 0.89943 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.38 71.98 0.67 -0.95 16 2 C 0.08 1.33 2.85 30.70 0.09 1.42 16 3 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 4 O -0.39 -7.95 10.38 -148.98 -1.55 -9.50 16 5 C 0.05 1.01 6.99 72.08 0.50 1.51 16 6 C 0.04 0.87 6.16 86.35 0.53 1.40 16 7 N -0.58 -14.57 3.02 -795.25 -2.40 -16.97 16 8 C 0.52 15.37 7.67 87.23 0.67 16.04 16 9 O -0.52 -15.68 12.04 -3.29 -0.04 -15.72 16 10 C 0.48 16.79 7.72 87.23 0.67 17.46 16 11 O -0.53 -20.31 10.32 -3.42 -0.04 -20.34 16 12 N -0.58 -20.76 5.45 -305.32 -1.66 -22.42 16 13 C -0.06 -2.57 6.90 37.82 0.26 -2.31 16 14 C -0.05 -2.35 10.85 85.44 0.93 -1.42 16 15 N -0.31 -17.93 10.39 -56.44 -0.59 -18.52 16 16 N -0.16 -8.86 3.73 -189.97 -0.71 -9.57 16 17 C -0.35 -18.29 10.25 84.02 0.86 -17.43 16 18 H 0.14 6.31 7.83 -2.91 -0.02 6.29 16 19 C 0.00 -0.23 5.50 84.96 0.47 0.23 16 20 N -0.82 -46.18 11.81 21.67 0.26 -45.92 16 21 Si 1.02 37.73 29.55 68.60 2.03 39.76 16 22 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.28 -10.12 7.11 99.48 0.71 -9.42 16 24 H -0.25 -8.26 7.11 99.48 0.71 -7.55 16 25 C -0.08 -3.43 11.50 83.41 0.96 -2.47 16 26 C 0.11 2.15 3.12 44.97 0.14 2.29 16 27 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 28 C -0.13 -2.54 7.52 71.98 0.54 -2.00 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.77 6.62 -2.39 -0.02 0.76 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.14 3.79 4.42 -41.22 -0.18 3.61 16 36 H 0.42 12.75 8.31 -92.71 -0.77 11.98 16 37 H 0.18 8.90 5.92 -2.91 -0.02 8.88 16 38 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 40 H 0.06 1.31 6.82 -2.39 -0.02 1.29 16 41 H 0.08 1.06 6.52 -2.39 -0.02 1.05 16 42 H 0.06 1.39 6.77 -2.39 -0.02 1.37 16 Total: -1.00 -69.19 340.95 2.73 -66.46 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.13 Total: 38.97 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 7.30 Total: 13.77 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.10 Total: -113.40 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -1.62 Total: -45.56 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -69.19 2.73 -66.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784816760.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.319 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds