Wall clock time and date at job start Fri Apr 10 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.71041 * 2 1 4 4 C 1.53292 * 109.68321 * 239.46396 * 2 1 3 5 5 H 1.09005 * 109.51740 * 172.60376 * 4 2 1 6 6 C 1.53002 * 109.51409 * 52.50061 * 4 2 1 7 7 O 1.42961 * 109.22101 * 292.57576 * 4 2 1 8 8 C 1.42961 * 114.17115 * 297.42186 * 7 4 2 9 9 C 1.53294 * 109.22167 * 62.57573 * 8 7 4 10 10 N 1.47149 * 109.68527 * 120.53408 * 2 1 3 11 11 C 1.34775 * 120.98721 * 249.17074 * 10 2 1 12 12 O 1.21373 * 119.99726 * 352.12336 * 11 10 2 13 13 C 1.49306 * 120.00389 * 172.11968 * 11 10 2 14 14 O 1.21406 * 120.00210 * 353.31572 * 13 11 10 15 15 N 1.34781 * 120.00081 * 173.30932 * 13 11 10 16 16 C 1.40288 * 120.00115 * 180.02562 * 15 13 11 17 17 C 1.40726 * 126.09898 * 0.02562 * 16 15 13 18 18 N 1.30879 * 108.37620 * 179.97438 * 17 16 15 19 19 N 1.40059 * 108.43510 * 0.02562 * 18 17 16 20 20 C 1.37295 * 126.05763 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00326 * 179.97438 * 20 19 18 22 22 C 1.39012 * 119.99773 * 359.97110 * 20 19 18 23 23 N 1.31284 * 119.99708 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00130 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47269 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47648 * 119.99950 * 24 22 20 27 27 H 1.48501 * 109.47321 * 240.00077 * 24 22 20 28 28 C 1.35786 * 126.10332 * 179.71832 * 16 15 13 29 29 H 1.09005 * 109.46781 * 299.46512 * 1 2 3 30 30 H 1.09000 * 109.47279 * 59.46370 * 1 2 3 31 31 H 1.08997 * 109.47332 * 179.46616 * 1 2 3 32 32 H 1.08997 * 109.46781 * 60.00391 * 6 4 2 33 33 H 1.09001 * 109.47023 * 180.02562 * 6 4 2 34 34 H 1.08995 * 109.46826 * 300.00263 * 6 4 2 35 35 H 1.09005 * 109.50883 * 302.65646 * 8 7 4 36 36 H 1.08998 * 109.51830 * 182.50509 * 8 7 4 37 37 H 1.08998 * 109.67896 * 67.42942 * 9 8 7 38 38 H 1.09009 * 109.68050 * 187.93994 * 9 8 7 39 39 H 0.97002 * 119.99626 * 0.02562 * 15 13 11 40 40 H 1.07999 * 125.81215 * 0.02562 * 17 16 15 41 41 H 0.97005 * 119.99477 * 179.97438 * 23 22 20 42 42 H 1.08002 * 126.24551 * 359.96796 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0463 -0.7333 -1.2432 5 1 3.1283 -0.6193 -1.3101 6 6 1.3918 -0.1426 -2.4937 7 8 1.7168 -2.1208 -1.1419 8 6 2.3260 -2.7877 -0.0337 9 6 1.8240 -2.1595 1.2713 10 7 2.0256 -0.7039 1.1934 11 6 2.6462 -0.0354 2.1855 12 8 2.9312 1.1357 2.0425 13 6 2.9831 -0.7353 3.4606 14 8 2.5922 -1.8686 3.6527 15 7 3.7212 -0.1090 4.3985 16 6 4.0382 -0.7669 5.5964 17 6 3.6552 -2.0738 5.9510 18 7 4.1372 -2.3368 7.1391 19 7 4.8433 -1.2142 7.5891 20 6 5.4955 -1.0983 8.7918 21 1 6.0122 -0.1830 9.0399 22 6 5.4907 -2.1592 9.6900 23 7 4.8629 -3.2720 9.3881 24 14 6.3773 -2.0015 11.3265 25 1 7.0021 -0.6578 11.4235 26 1 5.4051 -2.1770 12.4353 27 1 7.4302 -3.0444 11.4217 28 6 4.7741 -0.2584 6.6179 29 1 -0.3633 0.5055 0.8948 30 1 -0.3634 0.5221 -0.8851 31 1 -0.3634 -1.0276 -0.0096 32 1 1.6398 0.9162 -2.5677 33 1 1.7591 -0.6649 -3.3771 34 1 0.3101 -0.2587 -2.4268 35 1 3.4091 -2.6818 -0.0958 36 1 2.0610 -3.8448 -0.0545 37 1 0.7637 -2.3770 1.3993 38 1 2.3859 -2.5639 2.1134 39 1 4.0332 0.7965 4.2452 40 1 3.0649 -2.7456 5.3456 41 1 4.8599 -4.0125 10.0148 42 1 5.2213 0.7240 6.6555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784816762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:32 Heat of formation + Delta-G solvation = -6.152076 kcal Electronic energy + Delta-G solvation = -27369.560961 eV Core-core repulsion = 23352.952161 eV Total energy + Delta-G solvation = -4016.608800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.05961 -39.90234 -38.97818 -37.87657 -35.39164 -34.41222 -33.76309 -33.19401 -30.37876 -29.33661 -28.95795 -28.08749 -25.89447 -24.92364 -23.68423 -23.31263 -21.21871 -20.52804 -19.56641 -19.25213 -17.81397 -17.42956 -17.04294 -16.36953 -16.27995 -15.79470 -15.55579 -15.23453 -15.07609 -14.83808 -14.16777 -14.08855 -13.80264 -13.44102 -13.39136 -13.07012 -13.00466 -12.94484 -12.55194 -12.20004 -11.89256 -11.85563 -11.76951 -11.49220 -11.33490 -11.26561 -11.11196 -10.87767 -10.69761 -10.55584 -10.36431 -10.24805 -9.28907 -8.97090 -8.87589 -8.69114 -8.18224 -6.84213 -6.64920 -4.32365 1.54616 2.36543 2.88954 3.01330 3.07267 3.22958 3.45850 3.60212 3.64922 3.80920 4.30568 4.33675 4.48862 4.64022 4.77167 4.87167 4.90137 4.93969 5.02049 5.06760 5.14160 5.33268 5.35816 5.48297 5.56825 5.61839 5.66435 5.84819 5.93003 6.03249 6.13894 6.22881 6.29777 6.69254 6.83993 6.89151 6.96724 7.05635 7.11770 7.63161 7.77644 8.02263 8.12479 8.41192 8.63475 9.26028 9.54493 10.30845 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.002501 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.665956 B =11192.236849 C =11619.553167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.105 3.895 3 H 0.107 0.893 4 C 0.081 3.919 5 H 0.062 0.938 6 C -0.146 4.146 7 O -0.378 6.378 8 C 0.047 3.953 9 C 0.040 3.960 10 N -0.585 5.585 11 C 0.518 3.482 12 O -0.529 6.529 13 C 0.485 3.515 14 O -0.516 6.516 15 N -0.578 5.578 16 C -0.072 4.072 17 C -0.025 4.025 18 N -0.260 5.260 19 N -0.137 5.137 20 C -0.321 4.321 21 H 0.119 0.881 22 C 0.046 3.954 23 N -0.766 5.766 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.077 4.077 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.151 0.849 39 H 0.410 0.590 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 4.594 -17.496 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 H 0.125 0.875 4 C 0.022 3.978 5 H 0.080 0.920 6 C -0.203 4.203 7 O -0.297 6.297 8 C -0.030 4.030 9 C -0.082 4.082 10 N -0.319 5.319 11 C 0.302 3.698 12 O -0.405 6.405 13 C 0.267 3.733 14 O -0.395 6.395 15 N -0.220 5.220 16 C -0.178 4.178 17 C -0.201 4.201 18 N -0.091 5.091 19 N 0.096 4.904 20 C -0.453 4.453 21 H 0.136 0.864 22 C -0.172 4.172 23 N -0.393 5.393 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.228 4.228 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.095 0.905 38 H 0.168 0.832 39 H 0.245 0.755 40 H 0.195 0.805 41 H 0.086 0.914 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.138 3.244 -16.516 17.598 hybrid contribution 0.594 1.308 0.157 1.445 sum -4.544 4.552 -16.359 17.578 Atomic orbital electron populations 1.22089 0.93908 1.03155 1.02426 1.21977 0.95456 0.98078 0.84331 0.87481 1.22434 0.98816 0.82143 0.94416 0.91957 1.21833 1.01966 1.00589 0.95911 1.87933 1.72032 1.21426 1.48268 1.23083 0.97270 0.97323 0.85312 1.23492 1.04370 0.78761 1.01558 1.48003 1.56367 1.09186 1.18389 1.20258 0.78250 0.86648 0.84687 1.90720 1.52514 1.16358 1.80924 1.19617 0.81996 0.86812 0.84894 1.90406 1.53690 1.17851 1.77582 1.42176 1.47865 1.17275 1.14672 1.17251 1.14949 0.96281 0.89306 1.24148 1.05110 0.94878 0.95938 1.78271 1.13794 1.06329 1.10706 1.44581 1.28411 1.07198 1.10195 1.19986 1.31732 1.02946 0.90666 0.86351 1.25678 0.96501 0.94643 1.00349 1.70216 1.31905 1.02559 1.34592 0.85732 0.79031 0.79286 0.79942 1.18603 1.19829 1.19835 1.21312 1.11885 0.97438 0.92203 0.92268 0.90866 0.91462 0.90781 0.91480 0.91070 0.92748 0.87379 0.90515 0.83197 0.75536 0.80511 0.91359 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.64 37.16 0.32 -1.18 16 2 C 0.10 1.14 2.87 -67.43 -0.19 0.95 16 3 H 0.11 1.22 7.06 -51.93 -0.37 0.85 16 4 C 0.08 0.78 3.10 -26.58 -0.08 0.70 16 5 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 6 C -0.15 -1.03 9.01 37.16 0.33 -0.70 16 7 O -0.38 -4.11 10.01 -35.23 -0.35 -4.46 16 8 C 0.05 0.49 6.99 37.31 0.26 0.75 16 9 C 0.04 0.48 5.74 -3.53 -0.02 0.46 16 10 N -0.59 -7.70 2.71 -165.31 -0.45 -8.14 16 11 C 0.52 8.09 7.75 -11.65 -0.09 8.00 16 12 O -0.53 -8.86 15.97 5.48 0.09 -8.77 16 13 C 0.49 8.59 7.71 -11.65 -0.09 8.50 16 14 O -0.52 -9.78 10.35 5.45 0.06 -9.73 16 15 N -0.58 -10.68 5.45 -10.45 -0.06 -10.73 16 16 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 17 C -0.02 -0.63 10.85 -17.02 -0.18 -0.81 16 18 N -0.26 -7.31 10.39 30.81 0.32 -6.99 16 19 N -0.14 -3.67 3.73 -11.40 -0.04 -3.71 16 20 C -0.32 -8.27 10.25 -14.82 -0.15 -8.42 16 21 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 22 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 23 N -0.77 -20.82 11.81 55.50 0.66 -20.17 16 24 Si 0.94 18.44 29.55 -169.99 -5.02 13.42 16 25 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 27 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 28 C -0.08 -1.77 11.50 -16.38 -0.19 -1.96 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.54 6.42 -51.93 -0.33 0.20 16 31 H 0.07 0.67 7.23 -51.93 -0.38 0.29 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.48 6.38 -51.93 -0.33 0.15 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.90 7.67 -51.93 -0.40 0.50 16 38 H 0.15 2.11 4.50 -53.96 -0.24 1.87 16 39 H 0.41 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.18 4.25 5.92 -52.49 -0.31 3.94 16 41 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -31.44 344.60 -5.57 -37.01 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.20 Total: 11.94 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.76 Total: 5.14 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.43 Total: -49.74 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.21 Total: -22.96 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.44 -5.57 -37.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784816762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.856 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds