Wall clock time and date at job start Fri Apr 10 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.71041 * 2 1 4 4 C 1.53292 * 109.68321 * 239.46396 * 2 1 3 5 5 H 1.09005 * 109.51740 * 172.60376 * 4 2 1 6 6 C 1.53002 * 109.51409 * 52.50061 * 4 2 1 7 7 O 1.42961 * 109.22101 * 292.57576 * 4 2 1 8 8 C 1.42961 * 114.17115 * 297.42186 * 7 4 2 9 9 C 1.53294 * 109.22167 * 62.57573 * 8 7 4 10 10 N 1.47149 * 109.68527 * 120.53408 * 2 1 3 11 11 C 1.34775 * 120.98721 * 249.17074 * 10 2 1 12 12 O 1.21373 * 119.99726 * 352.12336 * 11 10 2 13 13 C 1.49306 * 120.00389 * 172.11968 * 11 10 2 14 14 O 1.21406 * 120.00210 * 353.31572 * 13 11 10 15 15 N 1.34781 * 120.00081 * 173.30932 * 13 11 10 16 16 C 1.40288 * 120.00115 * 180.02562 * 15 13 11 17 17 C 1.40726 * 126.09898 * 0.02562 * 16 15 13 18 18 N 1.30879 * 108.37620 * 179.97438 * 17 16 15 19 19 N 1.40059 * 108.43510 * 0.02562 * 18 17 16 20 20 C 1.37295 * 126.05763 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00326 * 179.97438 * 20 19 18 22 22 C 1.39012 * 119.99773 * 359.97110 * 20 19 18 23 23 N 1.31284 * 119.99708 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00130 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47269 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47648 * 119.99950 * 24 22 20 27 27 H 1.48501 * 109.47321 * 240.00077 * 24 22 20 28 28 C 1.35786 * 126.10332 * 179.71832 * 16 15 13 29 29 H 1.09005 * 109.46781 * 299.46512 * 1 2 3 30 30 H 1.09000 * 109.47279 * 59.46370 * 1 2 3 31 31 H 1.08997 * 109.47332 * 179.46616 * 1 2 3 32 32 H 1.08997 * 109.46781 * 60.00391 * 6 4 2 33 33 H 1.09001 * 109.47023 * 180.02562 * 6 4 2 34 34 H 1.08995 * 109.46826 * 300.00263 * 6 4 2 35 35 H 1.09005 * 109.50883 * 302.65646 * 8 7 4 36 36 H 1.08998 * 109.51830 * 182.50509 * 8 7 4 37 37 H 1.08998 * 109.67896 * 67.42942 * 9 8 7 38 38 H 1.09009 * 109.68050 * 187.93994 * 9 8 7 39 39 H 0.97002 * 119.99626 * 0.02562 * 15 13 11 40 40 H 1.07999 * 125.81215 * 0.02562 * 17 16 15 41 41 H 0.97005 * 119.99477 * 179.97438 * 23 22 20 42 42 H 1.08002 * 126.24551 * 359.96796 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0463 -0.7333 -1.2432 5 1 3.1283 -0.6193 -1.3101 6 6 1.3918 -0.1426 -2.4937 7 8 1.7168 -2.1208 -1.1419 8 6 2.3260 -2.7877 -0.0337 9 6 1.8240 -2.1595 1.2713 10 7 2.0256 -0.7039 1.1934 11 6 2.6462 -0.0354 2.1855 12 8 2.9312 1.1357 2.0425 13 6 2.9831 -0.7353 3.4606 14 8 2.5922 -1.8686 3.6527 15 7 3.7212 -0.1090 4.3985 16 6 4.0382 -0.7669 5.5964 17 6 3.6552 -2.0738 5.9510 18 7 4.1372 -2.3368 7.1391 19 7 4.8433 -1.2142 7.5891 20 6 5.4955 -1.0983 8.7918 21 1 6.0122 -0.1830 9.0399 22 6 5.4907 -2.1592 9.6900 23 7 4.8629 -3.2720 9.3881 24 14 6.3773 -2.0015 11.3265 25 1 7.0021 -0.6578 11.4235 26 1 5.4051 -2.1770 12.4353 27 1 7.4302 -3.0444 11.4217 28 6 4.7741 -0.2584 6.6179 29 1 -0.3633 0.5055 0.8948 30 1 -0.3634 0.5221 -0.8851 31 1 -0.3634 -1.0276 -0.0096 32 1 1.6398 0.9162 -2.5677 33 1 1.7591 -0.6649 -3.3771 34 1 0.3101 -0.2587 -2.4268 35 1 3.4091 -2.6818 -0.0958 36 1 2.0610 -3.8448 -0.0545 37 1 0.7637 -2.3770 1.3993 38 1 2.3859 -2.5639 2.1134 39 1 4.0332 0.7965 4.2452 40 1 3.0649 -2.7456 5.3456 41 1 4.8599 -4.0125 10.0148 42 1 5.2213 0.7240 6.6555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784816762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:31 Heat of formation + Delta-G solvation = -28.447687 kcal Electronic energy + Delta-G solvation = -27370.527771 eV Core-core repulsion = 23352.952161 eV Total energy + Delta-G solvation = -4017.575610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33745 -41.51512 -40.27723 -39.21428 -36.63097 -35.77103 -35.03800 -34.61945 -32.30614 -30.30881 -29.81155 -29.77271 -27.35904 -26.31599 -24.80473 -24.32761 -22.96789 -21.88137 -21.30787 -20.32794 -19.46095 -18.78709 -18.21643 -17.49511 -17.34921 -17.28481 -17.00941 -16.65183 -16.32618 -15.90977 -15.62282 -15.49679 -15.17962 -14.93956 -14.86118 -14.27644 -14.23112 -13.77311 -13.52625 -13.37507 -13.17545 -13.03127 -12.95075 -12.80419 -12.67896 -12.64059 -12.32068 -12.03282 -11.99197 -11.97495 -11.55358 -11.20227 -11.09198 -10.87888 -10.24242 -10.15135 -9.74227 -8.64281 -8.49977 -6.27456 0.18247 1.13017 1.27193 1.41281 1.59582 1.69364 1.97217 2.08232 2.33426 2.48992 2.72733 2.81238 3.06753 3.33977 3.56137 3.81778 3.95284 4.01152 4.15786 4.30579 4.32742 4.38079 4.50621 4.53381 4.65944 4.73599 4.79820 4.86100 4.92769 4.94571 4.97310 4.99438 5.12992 5.19588 5.25504 5.35700 5.40135 5.86678 5.91347 6.12799 6.17302 6.34592 6.62341 6.70019 7.01450 7.39859 7.61868 8.49331 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.002501 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.665956 B =11192.236849 C =11619.553167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 H 0.105 0.895 4 C 0.079 3.921 5 H 0.058 0.942 6 C -0.141 4.141 7 O -0.383 6.383 8 C 0.052 3.948 9 C 0.040 3.960 10 N -0.578 5.578 11 C 0.523 3.477 12 O -0.541 6.541 13 C 0.487 3.513 14 O -0.528 6.528 15 N -0.579 5.579 16 C -0.058 4.058 17 C -0.045 4.045 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.352 4.352 21 H 0.141 0.859 22 C -0.005 4.005 23 N -0.820 5.820 24 Si 1.019 2.981 25 H -0.242 1.242 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.075 4.075 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.423 0.577 40 H 0.179 0.821 41 H 0.278 0.722 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 6.090 -18.865 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.002 4.002 3 H 0.123 0.877 4 C 0.021 3.979 5 H 0.076 0.924 6 C -0.199 4.199 7 O -0.302 6.302 8 C -0.025 4.025 9 C -0.082 4.082 10 N -0.311 5.311 11 C 0.305 3.695 12 O -0.419 6.419 13 C 0.270 3.730 14 O -0.407 6.407 15 N -0.223 5.223 16 C -0.164 4.164 17 C -0.220 4.220 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.483 4.483 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.165 1.165 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.226 4.226 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.260 0.740 40 H 0.196 0.804 41 H 0.088 0.912 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.077 4.757 -17.945 19.247 hybrid contribution 0.471 0.863 0.353 1.044 sum -4.606 5.620 -17.592 19.034 Atomic orbital electron populations 1.22072 0.92564 1.03157 1.03212 1.22255 0.96457 0.97879 0.83631 0.87725 1.22569 0.98901 0.81579 0.94863 0.92384 1.21857 1.02066 1.01421 0.94520 1.87944 1.72108 1.22024 1.48087 1.23098 0.97134 0.98210 0.84097 1.23458 1.04432 0.78181 1.02111 1.48150 1.54982 1.09726 1.18285 1.19760 0.78989 0.86370 0.84355 1.90718 1.53506 1.16595 1.81049 1.20153 0.80847 0.86584 0.85420 1.90431 1.53629 1.18563 1.78073 1.42107 1.48672 1.17840 1.13675 1.17273 1.13425 0.95330 0.90358 1.24285 1.05696 0.96310 0.95729 1.78166 1.15335 1.08254 1.12127 1.44844 1.29354 1.07567 1.11322 1.20682 1.32412 1.04275 0.90942 0.84149 1.26869 0.96778 0.93801 1.04254 1.70377 1.34209 1.03776 1.36391 0.84534 0.77432 0.80047 0.74207 1.16475 1.19744 1.19695 1.22000 1.11023 0.98262 0.91301 0.93333 0.88219 0.91834 0.89180 0.90934 0.90478 0.92848 0.85355 0.89939 0.85140 0.73993 0.80424 0.91224 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.64 71.98 0.62 -1.93 16 2 C 0.10 1.99 2.87 44.96 0.13 2.12 16 3 H 0.10 2.18 7.06 -2.39 -0.02 2.17 16 4 C 0.08 1.36 3.10 30.69 0.10 1.46 16 5 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 6 C -0.14 -1.58 9.01 71.98 0.65 -0.93 16 7 O -0.38 -7.48 10.01 -148.98 -1.49 -8.97 16 8 C 0.05 0.98 6.99 72.08 0.50 1.49 16 9 C 0.04 0.93 5.74 86.35 0.50 1.42 16 10 N -0.58 -14.57 2.71 -795.26 -2.16 -16.72 16 11 C 0.52 15.88 7.75 87.22 0.68 16.56 16 12 O -0.54 -17.47 15.97 -3.32 -0.05 -17.52 16 13 C 0.49 17.13 7.71 87.22 0.67 17.81 16 14 O -0.53 -20.23 10.35 -3.42 -0.04 -20.27 16 15 N -0.58 -21.05 5.45 -305.32 -1.66 -22.71 16 16 C -0.06 -2.60 6.90 37.83 0.26 -2.34 16 17 C -0.04 -2.31 10.85 85.44 0.93 -1.39 16 18 N -0.31 -17.90 10.39 -56.43 -0.59 -18.49 16 19 N -0.16 -8.85 3.73 -189.98 -0.71 -9.56 16 20 C -0.35 -18.25 10.25 84.02 0.86 -17.39 16 21 H 0.14 6.34 7.83 -2.91 -0.02 6.31 16 22 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 23 N -0.82 -46.11 11.81 21.67 0.26 -45.85 16 24 Si 1.02 37.76 29.55 68.60 2.03 39.79 16 25 H -0.24 -8.07 7.11 99.48 0.71 -7.36 16 26 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 27 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 28 C -0.07 -3.43 11.50 83.41 0.96 -2.47 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.10 1.15 6.42 -2.39 -0.02 1.14 16 31 H 0.06 1.13 7.23 -2.39 -0.02 1.11 16 32 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.78 6.38 -2.39 -0.02 0.77 16 35 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 1.85 7.67 -2.39 -0.02 1.83 16 38 H 0.13 3.67 4.50 -34.66 -0.16 3.51 16 39 H 0.42 13.05 8.31 -92.71 -0.77 12.27 16 40 H 0.18 8.90 5.92 -2.91 -0.02 8.89 16 41 H 0.28 14.30 8.31 -92.70 -0.77 13.53 16 42 H 0.19 6.82 8.06 -2.91 -0.02 6.79 16 Total: -1.00 -69.91 344.60 3.06 -66.85 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: 0.16 Total: 38.84 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 7.32 Total: 14.63 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.86 Total: -113.34 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -1.58 Total: -46.76 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -69.91 3.06 -66.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784816762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.401 kcal (2) G-P(sol) polarization free energy of solvation -69.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds