Wall clock time and date at job start Fri Apr 10 2020 18:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42889 * 113.99949 * 2 1 4 4 H 1.09004 * 109.58040 * 330.15713 * 3 2 1 5 5 C 1.53094 * 109.52543 * 90.31859 * 3 2 1 6 6 O 1.42897 * 109.42020 * 177.51496 * 5 3 2 7 7 C 1.42906 * 114.09737 * 298.84059 * 6 5 3 8 8 C 1.53096 * 109.41574 * 61.15417 * 7 6 5 9 9 C 1.53174 * 109.16174 * 302.39500 * 8 7 6 10 10 H 1.09000 * 109.54737 * 297.02011 * 9 8 7 11 11 N 1.46499 * 109.54198 * 176.84538 * 9 8 7 12 12 C 1.46503 * 120.00031 * 300.00425 * 11 9 8 13 13 S 1.65605 * 120.00009 * 119.99780 * 11 9 8 14 14 O 1.42100 * 106.39841 * 156.46090 * 13 11 9 15 15 O 1.42102 * 106.39900 * 23.54384 * 13 11 9 16 16 N 1.65603 * 107.21743 * 270.00187 * 13 11 9 17 17 C 1.46497 * 119.99916 * 269.99767 * 16 13 11 18 18 C 1.46499 * 119.99613 * 90.00350 * 16 13 11 19 19 C 1.50701 * 109.47260 * 95.00081 * 18 16 13 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 16 21 21 C 1.37871 * 119.99694 * 180.27562 * 19 18 16 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 18 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47301 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47430 * 239.99516 * 23 21 19 27 27 H 1.09004 * 109.47074 * 300.00026 * 1 2 3 28 28 H 1.08996 * 109.47157 * 59.99984 * 1 2 3 29 29 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.48454 * 57.52380 * 5 3 2 31 31 H 1.09004 * 109.47478 * 297.49611 * 5 3 2 32 32 H 1.09006 * 109.47444 * 301.17737 * 7 6 5 33 33 H 1.08991 * 109.48325 * 181.14191 * 7 6 5 34 34 H 1.09000 * 109.52102 * 182.48671 * 8 7 6 35 35 H 1.09000 * 109.51731 * 62.29806 * 8 7 6 36 36 H 1.09003 * 109.46650 * 269.99673 * 12 11 9 37 37 H 1.08993 * 109.47195 * 29.99741 * 12 11 9 38 38 H 1.08997 * 109.47169 * 150.00266 * 12 11 9 39 39 H 1.09006 * 109.47117 * 270.00190 * 17 16 13 40 40 H 1.09004 * 109.47549 * 30.00169 * 17 16 13 41 41 H 1.09002 * 109.47231 * 150.00103 * 17 16 13 42 42 H 1.09000 * 109.47197 * 334.99087 * 18 16 13 43 43 H 1.09007 * 109.46342 * 214.99659 * 18 16 13 44 44 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0014 -0.5111 5 6 2.2257 1.7695 1.4429 6 8 2.8597 3.0501 1.4404 7 6 4.1472 3.0625 0.8203 8 6 4.0091 2.6502 -0.6476 9 6 3.3607 1.2645 -0.7218 10 1 4.0099 0.5319 -0.2423 11 7 3.1556 0.8939 -2.1243 12 6 2.3111 1.7252 -2.9857 13 16 3.8786 -0.4647 -2.7359 14 8 3.1017 -0.8622 -3.8574 15 8 4.1356 -1.3160 -1.6275 16 7 5.3563 -0.0092 -3.3283 17 6 5.4852 0.4226 -4.7223 18 6 6.5348 -0.0381 -2.4584 19 6 7.2644 -1.3436 -2.6442 20 1 6.8877 -2.0784 -3.3403 21 6 8.4093 -1.6023 -1.9209 22 7 8.8678 -0.7076 -1.0730 23 14 9.3093 -3.2237 -2.1454 24 1 8.5945 -4.0517 -3.1496 25 1 10.6934 -2.9607 -2.6149 26 1 9.3554 -3.9479 -0.8498 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.8582 1.0517 1.9651 31 1 1.2630 1.8416 1.9490 32 1 4.8049 2.3615 1.3344 33 1 4.5689 4.0659 0.8780 34 1 4.9952 2.6163 -1.1108 35 1 3.3841 3.3734 -1.1717 36 1 1.2806 1.3741 -2.9320 37 1 2.3599 2.7614 -2.6513 38 1 2.6646 1.6583 -4.0146 39 1 5.7026 -0.4406 -5.3514 40 1 4.5526 0.8836 -5.0477 41 1 6.2963 1.1461 -4.8051 42 1 6.2214 0.0585 -1.4189 43 1 7.1971 0.7883 -2.7165 44 1 9.6730 -0.8899 -0.5639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882744011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:02 Heat of formation + Delta-G solvation = -154.633484 kcal Electronic energy + Delta-G solvation = -28130.955316 eV Core-core repulsion = 24211.059079 eV Total energy + Delta-G solvation = -3919.896237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.98152 -37.31941 -36.60311 -36.05346 -35.47266 -35.06849 -32.43407 -31.58468 -30.39335 -27.79186 -26.74202 -26.61038 -25.05590 -23.97757 -23.20065 -22.27021 -20.20459 -18.60161 -17.38748 -17.12766 -16.75670 -16.51730 -16.34363 -16.07148 -15.33652 -15.21803 -15.01972 -14.58228 -14.13285 -14.02888 -13.78180 -13.34809 -13.34605 -13.12076 -12.96158 -12.48177 -12.38056 -12.11875 -12.01533 -11.62861 -11.55465 -11.48807 -11.36165 -11.23674 -11.14222 -11.09397 -11.04678 -10.68135 -10.54615 -10.40491 -10.11436 -10.00743 -9.75003 -9.38549 -8.84222 -8.44544 -8.04655 -6.07084 -4.10341 1.19892 3.31316 3.37194 3.39101 3.44973 3.53521 3.94159 4.13470 4.45422 4.57977 4.72777 4.77891 4.88947 4.97815 5.08435 5.15396 5.19957 5.25065 5.28458 5.31937 5.47436 5.52393 5.57447 5.59293 5.62314 5.64773 5.76474 5.81381 5.83311 6.02230 6.04783 6.24893 6.34862 6.49144 6.74405 6.90727 7.18755 7.22861 7.38777 7.60195 7.91069 8.20292 8.92186 9.55064 11.01592 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.005062 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.339174 B = 5530.033179 C = 6158.977242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.367 6.367 3 C 0.052 3.948 4 H 0.072 0.928 5 C 0.041 3.959 6 O -0.379 6.379 7 C 0.058 3.942 8 C -0.163 4.163 9 C 0.151 3.849 10 H 0.114 0.886 11 N -1.004 6.004 12 C 0.096 3.904 13 S 2.780 3.220 14 O -0.995 6.995 15 O -0.954 6.954 16 N -1.000 6.000 17 C 0.109 3.891 18 C 0.258 3.742 19 C -0.527 4.527 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.897 5.897 23 Si 0.896 3.104 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.282 1.282 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.034 0.966 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.929 10.394 1.186 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.285 6.285 3 C -0.009 4.009 4 H 0.090 0.910 5 C -0.037 4.037 6 O -0.298 6.298 7 C -0.019 4.019 8 C -0.203 4.203 9 C 0.044 3.956 10 H 0.131 0.869 11 N -0.840 5.840 12 C -0.050 4.050 13 S 2.789 3.211 14 O -0.979 6.979 15 O -0.937 6.937 16 N -0.842 5.842 17 C -0.038 4.038 18 C 0.136 3.864 19 C -0.566 4.566 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.536 5.536 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.208 1.208 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.125 9.540 1.345 17.098 hybrid contribution 0.633 -0.489 -0.262 0.841 sum -13.492 9.051 1.083 16.283 Atomic orbital electron populations 1.22836 0.81370 1.02941 0.99697 1.88059 1.19330 1.26269 1.94837 1.23144 0.95800 0.85696 0.96231 0.90994 1.23063 0.98820 0.85847 0.95945 1.87917 1.32591 1.29983 1.79284 1.22683 0.84788 1.02903 0.91539 1.22635 1.03031 0.96353 0.98241 1.20998 0.95468 0.97882 0.81215 0.86863 1.58201 1.62776 1.46117 1.16943 1.21348 0.94517 0.95449 0.93687 1.02130 0.72491 0.73325 0.73143 1.93518 1.70425 1.80722 1.53255 1.93624 1.84750 1.62141 1.53187 1.57784 1.25049 1.82772 1.18611 1.21206 1.00668 0.99654 0.82236 1.19054 0.81382 0.97775 0.88165 1.21524 1.09093 1.02216 1.23767 0.92193 1.24912 0.97121 0.97098 0.94828 1.69914 1.23205 1.34520 1.25949 0.86468 0.79241 0.83689 0.78226 1.19647 1.20961 1.20770 0.94130 0.94075 0.89460 0.91586 0.88726 0.91976 0.88093 0.88885 0.90452 0.93193 0.91368 0.91251 0.93173 0.93198 0.91505 0.94657 0.94801 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.37 -5.46 10.28 -35.23 -0.36 -5.82 16 3 C 0.05 0.68 2.16 -26.59 -0.06 0.62 16 4 H 0.07 0.83 7.22 -51.93 -0.37 0.45 16 5 C 0.04 0.49 6.47 37.21 0.24 0.73 16 6 O -0.38 -4.65 10.77 -35.23 -0.38 -5.02 16 7 C 0.06 0.66 6.84 37.21 0.25 0.92 16 8 C -0.16 -1.99 5.46 -26.59 -0.15 -2.13 16 9 C 0.15 2.27 2.28 -67.75 -0.15 2.11 16 10 H 0.11 2.03 6.91 -51.93 -0.36 1.67 16 11 N -1.00 -15.85 3.06 -114.41 -0.35 -16.20 16 12 C 0.10 1.16 9.28 59.85 0.56 1.72 16 13 S 2.78 57.59 5.97 -107.50 -0.64 56.95 16 14 O -1.00 -21.59 16.28 -57.17 -0.93 -22.52 16 15 O -0.95 -23.58 15.67 -57.17 -0.90 -24.47 16 16 N -1.00 -20.93 3.23 -123.05 -0.40 -21.33 16 17 C 0.11 1.88 10.33 59.85 0.62 2.50 16 18 C 0.26 6.39 5.12 -5.19 -0.03 6.36 16 19 C -0.53 -14.84 9.38 -34.44 -0.32 -15.17 16 20 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 23 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H 0.04 0.34 7.96 -51.93 -0.41 -0.07 16 28 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.93 7.96 -51.93 -0.41 0.52 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 0.81 6.56 -51.93 -0.34 0.47 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.65 6.38 -51.93 -0.33 0.32 16 38 H 0.07 0.81 7.37 -51.93 -0.38 0.43 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.72 7.37 -51.93 -0.38 0.33 16 41 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 42 H 0.04 0.92 7.61 -51.93 -0.40 0.52 16 43 H 0.03 0.84 7.96 -51.93 -0.41 0.43 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -34.61 365.44 -7.92 -42.53 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.14 Total: -2.17 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 1.96 Total: 0.72 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.01 Total: -62.63 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -2.57 Total: -57.84 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 57.59 SS G_CDS: -0.64 Total: 56.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.61 -7.92 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882744011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.105 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds