Wall clock time and date at job start Fri Apr 10 2020 18:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42889 * 113.99949 * 2 1 4 4 H 1.09004 * 109.58040 * 330.15713 * 3 2 1 5 5 C 1.53094 * 109.52543 * 90.31859 * 3 2 1 6 6 O 1.42897 * 109.42020 * 177.51496 * 5 3 2 7 7 C 1.42906 * 114.09737 * 298.84059 * 6 5 3 8 8 C 1.53096 * 109.41574 * 61.15417 * 7 6 5 9 9 C 1.53174 * 109.16174 * 302.39500 * 8 7 6 10 10 H 1.09000 * 109.54737 * 297.02011 * 9 8 7 11 11 N 1.46499 * 109.54198 * 176.84538 * 9 8 7 12 12 C 1.46503 * 120.00031 * 300.00425 * 11 9 8 13 13 S 1.65605 * 120.00009 * 119.99780 * 11 9 8 14 14 O 1.42100 * 106.39841 * 156.46090 * 13 11 9 15 15 O 1.42102 * 106.39900 * 23.54384 * 13 11 9 16 16 N 1.65603 * 107.21743 * 270.00187 * 13 11 9 17 17 C 1.46497 * 119.99916 * 269.99767 * 16 13 11 18 18 C 1.46499 * 119.99613 * 90.00350 * 16 13 11 19 19 C 1.50701 * 109.47260 * 95.00081 * 18 16 13 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 16 21 21 C 1.37871 * 119.99694 * 180.27562 * 19 18 16 22 22 N 1.31514 * 120.00482 * 359.71466 * 21 19 18 23 23 Si 1.86801 * 119.99746 * 179.72062 * 21 19 18 24 24 H 1.48494 * 109.47230 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47301 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47430 * 239.99516 * 23 21 19 27 27 H 1.09004 * 109.47074 * 300.00026 * 1 2 3 28 28 H 1.08996 * 109.47157 * 59.99984 * 1 2 3 29 29 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.48454 * 57.52380 * 5 3 2 31 31 H 1.09004 * 109.47478 * 297.49611 * 5 3 2 32 32 H 1.09006 * 109.47444 * 301.17737 * 7 6 5 33 33 H 1.08991 * 109.48325 * 181.14191 * 7 6 5 34 34 H 1.09000 * 109.52102 * 182.48671 * 8 7 6 35 35 H 1.09000 * 109.51731 * 62.29806 * 8 7 6 36 36 H 1.09003 * 109.46650 * 269.99673 * 12 11 9 37 37 H 1.08993 * 109.47195 * 29.99741 * 12 11 9 38 38 H 1.08997 * 109.47169 * 150.00266 * 12 11 9 39 39 H 1.09006 * 109.47117 * 270.00190 * 17 16 13 40 40 H 1.09004 * 109.47549 * 30.00169 * 17 16 13 41 41 H 1.09002 * 109.47231 * 150.00103 * 17 16 13 42 42 H 1.09000 * 109.47197 * 334.99087 * 18 16 13 43 43 H 1.09007 * 109.46342 * 214.99659 * 18 16 13 44 44 H 0.96995 * 120.00207 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 2.0014 -0.5111 5 6 2.2257 1.7695 1.4429 6 8 2.8597 3.0501 1.4404 7 6 4.1472 3.0625 0.8203 8 6 4.0091 2.6502 -0.6476 9 6 3.3607 1.2645 -0.7218 10 1 4.0099 0.5319 -0.2423 11 7 3.1556 0.8939 -2.1243 12 6 2.3111 1.7252 -2.9857 13 16 3.8786 -0.4647 -2.7359 14 8 3.1017 -0.8622 -3.8574 15 8 4.1356 -1.3160 -1.6275 16 7 5.3563 -0.0092 -3.3283 17 6 5.4852 0.4226 -4.7223 18 6 6.5348 -0.0381 -2.4584 19 6 7.2644 -1.3436 -2.6442 20 1 6.8877 -2.0784 -3.3403 21 6 8.4093 -1.6023 -1.9209 22 7 8.8678 -0.7076 -1.0730 23 14 9.3093 -3.2237 -2.1454 24 1 8.5945 -4.0517 -3.1496 25 1 10.6934 -2.9607 -2.6149 26 1 9.3554 -3.9479 -0.8498 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.8582 1.0517 1.9651 31 1 1.2630 1.8416 1.9490 32 1 4.8049 2.3615 1.3344 33 1 4.5689 4.0659 0.8780 34 1 4.9952 2.6163 -1.1108 35 1 3.3841 3.3734 -1.1717 36 1 1.2806 1.3741 -2.9320 37 1 2.3599 2.7614 -2.6513 38 1 2.6646 1.6583 -4.0146 39 1 5.7026 -0.4406 -5.3514 40 1 4.5526 0.8836 -5.0477 41 1 6.2963 1.1461 -4.8051 42 1 6.2214 0.0585 -1.4189 43 1 7.1971 0.7883 -2.7165 44 1 9.6730 -0.8899 -0.5639 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882744011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:01 Heat of formation + Delta-G solvation = -182.050239 kcal Electronic energy + Delta-G solvation = -28132.144196 eV Core-core repulsion = 24211.059079 eV Total energy + Delta-G solvation = -3921.085117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99125 -38.33094 -38.29750 -37.26398 -37.14921 -36.82266 -34.52033 -32.63650 -31.34344 -29.68779 -27.77126 -27.51222 -26.76307 -25.09092 -24.20577 -24.14088 -21.27438 -20.04992 -19.05949 -18.47579 -18.32104 -18.07439 -17.46910 -17.33153 -16.84027 -16.40692 -16.16381 -16.03549 -15.42728 -15.16740 -14.96309 -14.86171 -14.80691 -14.23047 -14.05714 -13.96352 -13.93604 -13.64101 -13.27956 -13.21676 -13.06469 -12.97489 -12.84427 -12.68111 -12.48420 -12.45103 -12.37650 -12.28683 -12.19065 -11.95106 -11.76108 -11.44303 -11.06861 -10.60967 -10.39050 -10.02583 -9.77463 -8.22184 -6.33300 -0.39280 1.36106 1.39111 1.50366 1.99346 2.38222 2.52228 2.59137 3.00801 3.08722 3.34436 3.56199 3.74214 3.82611 3.88086 4.00622 4.10938 4.12730 4.31556 4.41167 4.49181 4.51796 4.60980 4.65210 4.68189 4.72282 4.75092 4.80321 4.84438 4.89086 4.90402 5.02512 5.04218 5.15270 5.23412 5.41570 5.57258 5.69313 5.94133 5.97952 6.09915 6.30555 6.74026 7.35386 8.85372 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.005062 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.339174 B = 5530.033179 C = 6158.977242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.404 6.404 3 C 0.055 3.945 4 H 0.096 0.904 5 C 0.043 3.957 6 O -0.379 6.379 7 C 0.057 3.943 8 C -0.155 4.155 9 C 0.144 3.856 10 H 0.071 0.929 11 N -0.994 5.994 12 C 0.084 3.916 13 S 2.790 3.210 14 O -1.009 7.009 15 O -1.004 7.004 16 N -1.005 6.005 17 C 0.100 3.900 18 C 0.275 3.725 19 C -0.550 4.550 20 H 0.046 0.954 21 C 0.016 3.984 22 N -0.920 5.920 23 Si 0.952 3.048 24 H -0.273 1.273 25 H -0.267 1.267 26 H -0.279 1.279 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.120 0.880 32 H 0.046 0.954 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.015 0.985 43 H 0.032 0.968 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 12.128 0.730 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.323 6.323 3 C -0.005 4.005 4 H 0.114 0.886 5 C -0.035 4.035 6 O -0.298 6.298 7 C -0.020 4.020 8 C -0.195 4.195 9 C 0.037 3.963 10 H 0.090 0.910 11 N -0.834 5.834 12 C -0.060 4.060 13 S 2.800 3.200 14 O -0.993 6.993 15 O -0.988 6.988 16 N -0.847 5.847 17 C -0.046 4.046 18 C 0.152 3.848 19 C -0.590 4.590 20 H 0.064 0.936 21 C -0.184 4.184 22 N -0.560 5.560 23 Si 0.777 3.223 24 H -0.198 1.198 25 H -0.192 1.192 26 H -0.205 1.205 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.065 0.935 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.033 0.967 43 H 0.050 0.950 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.274 11.278 0.859 19.006 hybrid contribution 0.902 -0.995 -0.120 1.348 sum -14.373 10.283 0.739 17.688 Atomic orbital electron populations 1.23062 0.79363 1.03733 1.01463 1.88026 1.21730 1.27479 1.95092 1.23168 0.94829 0.85680 0.96787 0.88576 1.23099 0.99657 0.85422 0.95321 1.87919 1.32666 1.29896 1.79289 1.22774 0.84503 1.03968 0.90755 1.22599 1.02697 0.95103 0.99055 1.21139 0.96526 0.98239 0.80413 0.91037 1.57758 1.62578 1.45385 1.17695 1.21717 0.94215 0.96614 0.93443 1.01523 0.72419 0.73885 0.72189 1.93486 1.70461 1.81629 1.53675 1.93554 1.85464 1.64890 1.54880 1.57670 1.24051 1.83186 1.19785 1.21467 1.03152 0.99883 0.80071 1.18614 0.82194 0.96170 0.87860 1.21837 1.09897 1.03418 1.23831 0.93585 1.25674 0.97898 1.00274 0.94556 1.69985 1.23685 1.35966 1.26360 0.85595 0.78716 0.79822 0.78124 1.19795 1.19162 1.20453 0.91745 0.92828 0.89346 0.93253 0.86211 0.93547 0.85454 0.89968 0.87722 0.92175 0.87944 0.90621 0.94092 0.89886 0.89939 0.96695 0.95004 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.40 -11.82 10.28 -148.98 -1.53 -13.35 16 3 C 0.06 1.37 2.16 30.69 0.07 1.44 16 4 H 0.10 1.89 7.22 -2.38 -0.02 1.87 16 5 C 0.04 0.96 6.47 72.01 0.47 1.43 16 6 O -0.38 -8.50 10.77 -148.98 -1.60 -10.11 16 7 C 0.06 1.23 6.84 72.01 0.49 1.72 16 8 C -0.16 -3.56 5.46 30.68 0.17 -3.40 16 9 C 0.14 4.27 2.28 45.11 0.10 4.38 16 10 H 0.07 2.74 6.91 -2.39 -0.02 2.72 16 11 N -0.99 -30.61 3.06 -515.89 -1.58 -32.19 16 12 C 0.08 1.80 9.28 127.77 1.19 2.98 16 13 S 2.79 117.45 5.97 -56.49 -0.34 117.11 16 14 O -1.01 -43.60 16.28 -128.00 -2.08 -45.68 16 15 O -1.00 -52.14 15.67 -128.00 -2.01 -54.14 16 16 N -1.01 -42.61 3.23 -543.21 -1.75 -44.37 16 17 C 0.10 3.36 10.33 127.77 1.32 4.68 16 18 C 0.28 14.03 5.12 85.63 0.44 14.47 16 19 C -0.55 -31.84 9.38 25.60 0.24 -31.60 16 20 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 21 C 0.02 0.90 5.46 84.65 0.46 1.36 16 22 N -0.92 -53.74 13.29 21.45 0.28 -53.46 16 23 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 24 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 H 0.06 0.93 7.96 -2.39 -0.02 0.91 16 28 H 0.05 0.89 8.09 -2.39 -0.02 0.87 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.12 2.06 7.96 -2.39 -0.02 2.04 16 32 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 35 H 0.10 1.82 6.56 -2.39 -0.02 1.80 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.50 6.38 -2.39 -0.02 1.48 16 38 H 0.08 1.54 7.37 -2.39 -0.02 1.52 16 39 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.08 2.22 7.37 -2.38 -0.02 2.20 16 41 H 0.08 2.50 7.94 -2.39 -0.02 2.48 16 42 H 0.02 0.82 7.61 -2.39 -0.02 0.81 16 43 H 0.03 1.62 7.96 -2.38 -0.02 1.60 16 44 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -76.58 365.44 -1.44 -78.02 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.98 Total: 11.76 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.17 Total: -0.93 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -3.05 Total: -130.02 kcal Atomic # 8 Polarization: -116.06 SS G_CDS: -7.23 Total: -123.29 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 117.45 SS G_CDS: -0.34 Total: 117.11 kcal Total: -76.58 -1.44 -78.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882744011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.034 kcal (2) G-P(sol) polarization free energy of solvation -76.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds