Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00083 * 2 1 4 4 H 1.09002 * 109.54418 * 30.00038 * 3 2 1 5 5 C 1.53179 * 109.54190 * 269.82533 * 3 2 1 6 6 C 1.53093 * 109.16184 * 183.06716 * 5 3 2 7 7 O 1.42902 * 109.41910 * 57.60502 * 6 5 3 8 8 C 1.42910 * 114.09650 * 298.84413 * 7 6 5 9 9 C 1.53095 * 109.41337 * 61.15575 * 8 7 6 10 10 H 1.08999 * 109.51965 * 62.30125 * 9 8 7 11 11 N 1.46494 * 109.51868 * 182.48220 * 9 8 7 12 12 S 1.65598 * 120.00345 * 264.68669 * 11 9 8 13 13 O 1.42101 * 106.40557 * 178.54461 * 12 11 9 14 14 O 1.42105 * 106.40176 * 311.46195 * 12 11 9 15 15 N 1.65595 * 107.21950 * 65.00279 * 12 11 9 16 16 C 1.46503 * 119.99942 * 270.00014 * 15 12 11 17 17 C 1.46498 * 120.00274 * 89.99917 * 15 12 11 18 18 H 1.09006 * 109.46665 * 0.02562 * 17 15 12 19 19 C 1.52998 * 109.46929 * 119.99982 * 17 15 12 20 20 C 1.50693 * 109.47559 * 240.00291 * 17 15 12 21 21 H 1.08008 * 119.99581 * 359.97438 * 20 17 15 22 22 C 1.37871 * 120.00592 * 179.97438 * 20 17 15 23 23 N 1.31523 * 119.99608 * 0.02562 * 22 20 17 24 24 Si 1.86793 * 120.00582 * 180.02562 * 22 20 17 25 25 H 1.48498 * 109.47069 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47515 * 119.99994 * 24 22 20 27 27 H 1.48505 * 109.47181 * 239.99816 * 24 22 20 28 28 H 1.09001 * 109.47018 * 60.00142 * 1 2 3 29 29 H 1.09002 * 109.47332 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47331 * 299.99994 * 1 2 3 31 31 H 1.09003 * 109.52104 * 302.96646 * 5 3 2 32 32 H 1.08994 * 109.52284 * 63.09172 * 5 3 2 33 33 H 1.08997 * 109.47995 * 177.59278 * 6 5 3 34 34 H 1.09005 * 109.47481 * 297.61237 * 6 5 3 35 35 H 1.08998 * 109.47667 * 181.14022 * 8 7 6 36 36 H 1.08998 * 109.48171 * 301.16077 * 8 7 6 37 37 H 0.97005 * 119.99980 * 84.68910 * 11 9 8 38 38 H 1.09007 * 109.47212 * 89.99939 * 16 15 12 39 39 H 1.08993 * 109.47598 * 209.99756 * 16 15 12 40 40 H 1.08995 * 109.47065 * 330.00138 * 16 15 12 41 41 H 1.09008 * 109.46921 * 180.02562 * 19 17 15 42 42 H 1.09001 * 109.47551 * 299.99784 * 19 17 15 43 43 H 1.09001 * 109.47409 * 60.00620 * 19 17 15 44 44 H 0.96995 * 119.99999 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3459 2.0004 0.5136 5 6 2.2227 1.7717 -1.4435 6 6 2.9152 3.1370 -1.4339 7 8 4.1525 3.0371 -0.7258 8 6 4.0119 2.6506 0.6429 9 6 3.3635 1.2658 0.7166 10 1 4.0107 0.5343 0.2326 11 7 3.1641 0.8927 2.1191 12 16 4.2916 -0.0381 2.8967 13 8 3.8317 -0.1936 4.2322 14 8 4.5678 -1.1355 2.0371 15 7 5.6861 0.8508 2.9828 16 6 6.6765 0.7659 1.9067 17 6 5.9293 1.7222 4.1351 18 1 5.0889 1.6539 4.8260 19 6 7.2106 1.2820 4.8459 20 6 6.0793 3.1462 3.6653 21 1 6.0017 3.3788 2.6134 22 6 6.3156 4.1521 4.5781 23 7 6.4106 3.8687 5.8589 24 14 6.5009 5.9173 3.9958 25 1 6.3537 5.9694 2.5191 26 1 5.4542 6.7596 4.6281 27 1 7.8429 6.4261 4.3773 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.8468 1.0505 -1.9712 32 1 1.2586 1.8547 -1.9451 33 1 3.1075 3.4543 -2.4587 34 1 2.2725 3.8670 -0.9418 35 1 4.9943 2.6176 1.1139 36 1 3.3839 3.3744 1.1623 37 1 2.3716 1.1908 2.5924 38 1 6.4579 1.5206 1.1512 39 1 7.6723 0.9385 2.3149 40 1 6.6364 -0.2244 1.4533 41 1 7.3913 1.9301 5.7036 42 1 7.1020 0.2520 5.1859 43 1 8.0510 1.3500 4.1552 44 1 6.5765 4.5764 6.5012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907836796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = -162.536027 kcal Electronic energy + Delta-G solvation = -28171.471294 eV Core-core repulsion = 24251.232377 eV Total energy + Delta-G solvation = -3920.238917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.88904 -37.43170 -36.65144 -36.18818 -35.22167 -34.84802 -32.61686 -32.04246 -29.19381 -28.99673 -26.96483 -25.56020 -25.19533 -24.19824 -23.25911 -20.89325 -20.62676 -18.82816 -17.45743 -17.13861 -16.67214 -16.51822 -16.32074 -16.07441 -15.68620 -15.18630 -14.94887 -14.60042 -14.40973 -13.84045 -13.50973 -13.43549 -13.26952 -13.02200 -12.83278 -12.15819 -12.06259 -11.95353 -11.75276 -11.60306 -11.47559 -11.34628 -11.28588 -11.14175 -11.03128 -10.95596 -10.81919 -10.64977 -10.44730 -10.25508 -10.15180 -9.96732 -9.64592 -9.23257 -9.04235 -8.50292 -7.97573 -6.11145 -4.19848 1.25436 3.22283 3.31497 3.33341 3.39676 3.53965 3.93640 4.17032 4.34190 4.51747 4.62791 4.78593 4.88925 5.03608 5.13068 5.14379 5.18625 5.19695 5.27863 5.36298 5.50046 5.55066 5.65113 5.69793 5.74222 5.86010 5.97705 6.15198 6.25206 6.44829 6.65649 6.84571 6.87391 7.04180 7.09778 7.15928 7.23730 7.52125 7.63311 7.77748 8.03493 8.24367 8.83444 9.47025 10.93746 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.005854 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.990759 B = 4781.579091 C = 6019.919777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.084 3.916 4 H 0.068 0.932 5 C -0.176 4.176 6 C 0.059 3.941 7 O -0.374 6.374 8 C 0.037 3.963 9 C 0.129 3.871 10 H 0.104 0.896 11 N -1.114 6.114 12 S 2.783 3.217 13 O -0.981 6.981 14 O -0.993 6.993 15 N -0.991 5.991 16 C 0.093 3.907 17 C 0.267 3.733 18 H 0.059 0.941 19 C -0.146 4.146 20 C -0.524 4.524 21 H 0.065 0.935 22 C 0.065 3.935 23 N -0.886 5.886 24 Si 0.893 3.107 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.284 1.284 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.412 0.588 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.012 0.988 43 H 0.033 0.967 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 -2.180 -12.753 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.025 3.975 4 H 0.086 0.914 5 C -0.215 4.215 6 C -0.018 4.018 7 O -0.291 6.291 8 C -0.041 4.041 9 C 0.020 3.980 10 H 0.122 0.878 11 N -0.872 5.872 12 S 2.791 3.209 13 O -0.965 6.965 14 O -0.977 6.977 15 N -0.834 5.834 16 C -0.053 4.053 17 C 0.165 3.835 18 H 0.077 0.923 19 C -0.205 4.205 20 C -0.564 4.564 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.524 5.524 24 Si 0.720 3.280 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.210 1.210 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.244 0.756 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.031 0.969 43 H 0.052 0.948 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.604 -3.188 -12.432 15.451 hybrid contribution -0.742 1.797 -0.051 1.945 sum -9.346 -1.391 -12.483 15.656 Atomic orbital electron populations 1.22812 0.81401 1.02824 0.99764 1.88025 1.19269 1.26797 1.94883 1.22445 0.94569 0.85411 0.95096 0.91415 1.22773 1.02233 0.99086 0.97410 1.22578 0.86465 0.94997 0.97790 1.88011 1.29017 1.88853 1.23212 1.23529 1.04520 0.93478 0.82550 1.21452 0.96388 0.98421 0.81718 0.87817 1.55957 1.38667 1.72763 1.19797 1.01818 0.72903 0.73489 0.72648 1.93594 1.81194 1.85856 1.35844 1.93542 1.84845 1.50555 1.68718 1.57727 1.33031 1.62040 1.30605 1.21380 0.94295 1.00165 0.89489 1.18741 0.95867 0.87555 0.81374 0.92340 1.22064 0.98445 0.97981 1.02051 1.21431 1.49871 0.91115 0.93945 0.91718 1.24914 0.95013 0.99013 0.94836 1.69893 1.48790 1.32770 1.00958 0.86530 0.77739 0.84690 0.78994 1.19587 1.21117 1.20997 0.94265 0.89574 0.93964 0.89680 0.90526 0.88465 0.93061 0.85514 0.91963 0.75573 0.93591 0.90406 0.91918 0.88899 0.96852 0.94757 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.37 -4.93 10.28 -35.23 -0.36 -5.29 16 3 C 0.08 1.03 2.25 -26.55 -0.06 0.97 16 4 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 5 C -0.18 -1.79 5.76 -26.59 -0.15 -1.94 16 6 C 0.06 0.61 6.84 37.21 0.25 0.87 16 7 O -0.37 -5.30 10.77 -35.23 -0.38 -5.68 16 8 C 0.04 0.56 6.45 37.21 0.24 0.80 16 9 C 0.13 1.89 2.69 -67.80 -0.18 1.71 16 10 H 0.10 1.63 7.51 -51.93 -0.39 1.24 16 11 N -1.11 -17.86 5.46 -4.78 -0.03 -17.89 16 12 S 2.78 54.74 6.12 -107.50 -0.66 54.08 16 13 O -0.98 -22.36 16.70 -57.17 -0.95 -23.31 16 14 O -0.99 -20.83 16.08 -57.17 -0.92 -21.75 16 15 N -0.99 -19.96 2.86 -115.86 -0.33 -20.29 16 16 C 0.09 1.63 9.67 59.85 0.58 2.21 16 17 C 0.27 6.32 2.62 -69.09 -0.18 6.14 16 18 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 19 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 20 C -0.52 -12.84 8.37 -34.45 -0.29 -13.13 16 21 H 0.06 1.52 5.99 -52.48 -0.31 1.21 16 22 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 23 N -0.89 -23.83 11.32 55.43 0.63 -23.21 16 24 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.04 0.30 7.97 -51.93 -0.41 -0.11 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.62 7.97 -51.93 -0.41 0.20 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.13 2.15 3.92 -51.93 -0.20 1.94 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.41 5.85 8.84 -34.47 -0.30 5.54 16 38 H 0.05 0.75 6.16 -51.92 -0.32 0.43 16 39 H 0.08 1.35 6.43 -51.93 -0.33 1.02 16 40 H 0.06 1.02 7.02 -51.93 -0.36 0.66 16 41 H 0.09 2.37 6.07 -51.92 -0.32 2.05 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.03 0.74 6.66 -51.93 -0.35 0.40 16 44 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 354.68 15.07 5.35 5.35 Total: -1.00 -31.40 354.68 -7.71 -39.11 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.57 Total: 6.46 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 1.54 Total: -2.53 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.27 Total: -61.38 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -2.62 Total: -56.03 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 54.74 SS G_CDS: -0.66 Total: 54.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.40 -7.71 -39.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907836796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.425 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds