Wall clock time and date at job start Fri Apr 10 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99729 * 2 1 4 4 C 1.53002 * 109.46958 * 185.08170 * 3 2 1 5 5 N 1.46497 * 109.47360 * 64.77184 * 4 3 2 6 6 C 1.46495 * 119.99838 * 79.51134 * 5 4 3 7 7 C 1.50704 * 109.47125 * 85.00296 * 6 5 4 8 8 H 1.07998 * 119.99671 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00584 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99651 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00287 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46812 * 90.00292 * 11 9 7 13 13 H 1.48497 * 109.46889 * 209.99931 * 11 9 7 14 14 H 1.48492 * 109.47131 * 330.00314 * 11 9 7 15 15 S 1.65597 * 120.00240 * 259.51729 * 5 4 3 16 16 O 1.42105 * 106.40254 * 29.13110 * 15 5 4 17 17 O 1.42099 * 106.40362 * 162.05188 * 15 5 4 18 18 N 1.65599 * 107.21724 * 275.59377 * 15 5 4 19 19 C 1.46504 * 119.99843 * 66.74396 * 18 15 5 20 20 H 1.09001 * 110.43549 * 351.24552 * 19 18 15 21 21 C 1.54092 * 110.49138 * 113.79677 * 19 18 15 22 22 O 1.43744 * 107.29617 * 116.64259 * 21 19 18 23 23 C 1.44381 * 106.97385 * 26.51584 * 22 21 19 24 24 C 1.54816 * 110.48338 * 228.56377 * 19 18 15 25 25 H 1.09003 * 110.90879 * 338.63624 * 24 19 18 26 26 C 1.53003 * 110.90962 * 102.24440 * 24 19 18 27 27 H 1.08997 * 109.47105 * 174.90330 * 1 2 3 28 28 H 1.08996 * 109.47908 * 294.90584 * 1 2 3 29 29 H 1.09006 * 109.46743 * 54.91152 * 1 2 3 30 30 H 1.09001 * 109.46964 * 305.08127 * 3 2 1 31 31 H 1.08998 * 109.47740 * 65.07943 * 3 2 1 32 32 H 1.09003 * 109.47078 * 184.77490 * 4 3 2 33 33 H 1.09005 * 109.46795 * 304.77524 * 4 3 2 34 34 H 1.09003 * 109.47723 * 204.99757 * 6 5 4 35 35 H 1.08999 * 109.47810 * 325.00391 * 6 5 4 36 36 H 0.97003 * 120.00218 * 179.97438 * 10 9 7 37 37 H 0.96997 * 120.00456 * 246.74027 * 18 15 5 38 38 H 1.09002 * 109.88141 * 236.07006 * 21 19 18 39 39 H 1.08997 * 109.88100 * 357.21897 * 21 19 18 40 40 H 1.08996 * 110.61836 * 78.44176 * 23 22 21 41 41 H 1.09007 * 110.61509 * 201.43946 * 23 22 21 42 42 H 1.08997 * 109.47161 * 65.11855 * 26 24 19 43 43 H 1.08994 * 109.47038 * 185.12150 * 26 24 19 44 44 H 1.08996 * 109.46600 * 305.12183 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5302 1.1870 -0.1278 5 7 3.8672 0.6077 -1.4305 6 6 3.8584 1.4482 -2.6302 7 6 5.1854 2.1505 -2.7613 8 1 5.9580 1.9866 -2.0247 9 6 5.4135 3.0013 -3.8219 10 7 4.4731 3.1996 -4.7197 11 14 7.0580 3.8723 -3.9839 12 1 7.9872 3.0312 -4.7805 13 1 6.8623 5.1765 -4.6664 14 1 7.6319 4.1013 -2.6336 15 16 4.2577 -0.9974 -1.5468 16 8 3.5591 -1.6573 -0.5000 17 8 4.1156 -1.3467 -2.9169 18 7 5.8696 -1.1365 -1.1935 19 6 6.3504 -0.8476 0.1598 20 1 5.5535 -0.4109 0.7617 21 6 6.8892 -2.1285 0.8258 22 8 8.2911 -1.9257 1.0704 23 6 8.4942 -0.5025 1.2037 24 6 7.5753 0.0979 0.1093 25 1 8.0571 0.0585 -0.8677 26 6 7.1732 1.5318 0.4603 27 1 -0.3633 -1.0236 -0.0913 28 1 -0.3635 0.4327 0.9320 29 1 -0.3633 0.5908 -0.8410 30 1 1.6183 1.8776 -0.8410 31 1 1.7624 1.8136 0.9319 32 1 3.9802 2.1762 -0.0427 33 1 3.9125 0.5444 0.6654 34 1 3.6886 0.8258 -3.5088 35 1 3.0622 2.1882 -2.5498 36 1 4.6333 3.7985 -5.4658 37 1 6.4954 -1.4093 -1.8826 38 1 6.3700 -2.3029 1.7681 39 1 6.7486 -2.9798 0.1598 40 1 8.1868 -0.1618 2.1923 41 1 9.5361 -0.2441 1.0142 42 1 6.8385 1.5718 1.4968 43 1 8.0306 2.1919 0.3296 44 1 6.3640 1.8530 -0.1955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921499149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:21 Heat of formation + Delta-G solvation = -166.713942 kcal Electronic energy + Delta-G solvation = -28116.031917 eV Core-core repulsion = 24195.611833 eV Total energy + Delta-G solvation = -3920.420085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.63282 -37.75817 -36.48032 -35.47821 -35.07637 -34.71593 -32.61302 -32.34379 -29.47721 -28.15475 -26.77622 -26.12002 -25.75445 -23.12375 -22.35433 -21.55871 -20.69063 -18.87380 -17.20682 -16.93646 -16.76450 -16.46171 -16.21670 -15.74936 -15.37788 -15.27854 -14.97161 -14.66087 -14.45587 -14.14691 -13.45074 -13.28753 -13.06491 -12.77202 -12.64309 -12.45503 -12.05557 -11.96679 -11.71538 -11.60181 -11.43749 -11.33272 -11.22801 -11.10925 -11.10242 -11.02250 -10.89143 -10.79215 -10.57339 -10.44092 -10.07784 -9.83957 -9.73413 -9.30143 -9.03760 -8.51518 -8.07437 -6.13280 -4.19712 1.35005 3.22238 3.29030 3.30089 3.50275 3.93937 4.16363 4.20954 4.33691 4.56867 4.84673 4.85708 4.95182 5.09893 5.21590 5.22837 5.35827 5.41658 5.51866 5.52406 5.55604 5.63736 5.65636 5.67253 5.73537 5.80435 5.86686 5.90304 6.03638 6.13549 6.17486 6.35239 6.45908 6.53095 6.83651 7.18411 7.37215 7.46422 7.51565 7.66792 7.85072 8.13303 8.85549 9.46382 10.94851 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.008640 B = 0.007800 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.020556 B = 3589.067618 C = 5645.874509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.039 3.961 4 C 0.135 3.865 5 N -0.986 5.986 6 C 0.247 3.753 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.064 3.936 10 N -0.890 5.890 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.273 1.273 15 S 2.783 3.217 16 O -0.977 6.977 17 O -0.980 6.980 18 N -1.118 6.118 19 C 0.131 3.869 20 H 0.100 0.900 21 C 0.035 3.965 22 O -0.379 6.379 23 C 0.049 3.951 24 C -0.132 4.132 25 H 0.096 0.904 26 C -0.154 4.154 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.415 0.585 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -3.541 12.592 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C -0.039 4.039 4 C 0.008 3.992 5 N -0.827 5.827 6 C 0.125 3.875 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.139 4.139 10 N -0.528 5.528 11 Si 0.719 3.281 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.198 1.198 15 S 2.790 3.210 16 O -0.960 6.960 17 O -0.964 6.964 18 N -0.875 5.875 19 C 0.022 3.978 20 H 0.118 0.882 21 C -0.044 4.044 22 O -0.298 6.298 23 C -0.028 4.028 24 C -0.153 4.153 25 H 0.114 0.886 26 C -0.211 4.211 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.248 0.752 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.788 -4.432 12.335 13.131 hybrid contribution 1.037 1.341 -0.498 1.767 sum 1.825 -3.091 11.838 12.370 Atomic orbital electron populations 1.22696 0.82296 1.02296 0.99321 1.88109 1.18516 1.27070 1.95213 1.23082 0.95465 0.85370 1.00023 1.21146 0.92603 1.00618 0.84799 1.57653 1.82062 1.28825 1.14128 1.19171 0.97508 0.90244 0.80626 1.21625 0.99892 1.26694 1.09668 0.91442 1.24949 0.96752 0.96625 0.95545 1.69934 1.32967 1.36881 1.12999 0.86610 0.84098 0.79071 0.78282 1.20611 1.21267 1.19777 1.01930 0.72635 0.73417 0.72985 1.93607 1.70819 1.72984 1.58613 1.93588 1.85357 1.83028 1.34412 1.56253 1.29563 1.84752 1.16936 1.22067 0.97569 0.94562 0.83587 0.88231 1.23668 0.82064 0.98535 1.00101 1.88864 1.24534 1.23353 1.93057 1.23668 1.00472 0.80938 0.97734 1.23083 0.95499 0.95972 1.00708 0.88572 1.21900 1.03217 0.94221 1.01744 0.90111 0.94741 0.94332 0.92411 0.93232 0.88811 0.91190 0.93126 0.94659 0.92643 0.75217 0.91525 0.89038 0.91996 0.88988 0.92731 0.92286 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.02 101.05 1.11 1.53 16 2 O -0.37 -6.43 9.26 -50.25 -0.47 -6.89 16 3 C 0.04 0.61 6.23 37.16 0.23 0.84 16 4 C 0.14 2.17 5.76 -4.04 -0.02 2.15 16 5 N -0.99 -19.28 2.78 -115.66 -0.32 -19.60 16 6 C 0.25 5.86 5.38 -5.19 -0.03 5.83 16 7 C -0.54 -13.33 9.38 -34.44 -0.32 -13.65 16 8 H 0.07 1.55 5.85 -52.49 -0.31 1.24 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -24.89 13.29 55.43 0.74 -24.16 16 11 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 15 S 2.78 54.74 5.97 -107.50 -0.64 54.09 16 16 O -0.98 -19.88 15.48 -63.99 -0.99 -20.87 16 17 O -0.98 -23.16 16.60 -57.17 -0.95 -24.11 16 18 N -1.12 -17.83 5.40 -3.59 -0.02 -17.85 16 19 C 0.13 1.80 3.24 -66.40 -0.22 1.58 16 20 H 0.10 1.31 5.65 -51.93 -0.29 1.02 16 21 C 0.04 0.45 7.50 37.73 0.28 0.74 16 22 O -0.38 -5.12 11.52 -35.23 -0.41 -5.52 16 23 C 0.05 0.55 7.17 38.21 0.27 0.82 16 24 C -0.13 -1.68 3.45 -88.61 -0.31 -1.98 16 25 H 0.10 1.31 8.04 -51.93 -0.42 0.89 16 26 C -0.15 -1.91 9.24 37.16 0.34 -1.56 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 30 H 0.06 0.93 7.58 -51.93 -0.39 0.54 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.07 1.01 5.74 -51.93 -0.30 0.71 16 34 H 0.05 1.37 6.88 -51.93 -0.36 1.01 16 35 H 0.04 0.87 7.57 -51.93 -0.39 0.47 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.41 6.20 8.93 -34.47 -0.31 5.89 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.06 0.60 7.93 -51.93 -0.41 0.19 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.56 7.98 -51.93 -0.41 0.14 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.27 6.18 -51.93 -0.32 0.95 16 LS Contribution 364.64 15.07 5.49 5.49 Total: -1.00 -32.41 364.64 -8.17 -40.59 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.84 Total: 5.89 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 1.25 Total: -2.13 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.40 Total: -61.61 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -2.81 Total: -57.39 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 54.74 SS G_CDS: -0.64 Total: 54.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.41 -8.17 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921499149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.128 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds