Wall clock time and date at job start Fri Apr 10 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.46510 * 120.00089 * 59.99586 * 12 2 1 14 14 S 1.65604 * 120.00327 * 240.00206 * 12 2 1 15 15 O 1.42103 * 106.40430 * 203.53883 * 14 12 2 16 16 O 1.42102 * 106.39828 * 336.45857 * 14 12 2 17 17 N 1.65595 * 107.21718 * 89.99813 * 14 12 2 18 18 C 1.46497 * 120.00600 * 65.00174 * 17 14 12 19 19 C 1.52992 * 109.47529 * 164.99687 * 18 17 14 20 20 O 1.42898 * 109.47075 * 65.00010 * 19 18 17 21 21 C 1.42898 * 114.00423 * 179.97438 * 20 19 18 22 22 H 1.09007 * 110.43593 * 328.91687 * 21 20 19 23 23 C 1.54807 * 110.49250 * 206.22320 * 21 20 19 24 24 C 1.54997 * 102.09371 * 220.44273 * 23 21 20 25 25 O 1.44378 * 103.48758 * 37.02438 * 24 23 21 26 26 C 1.43738 * 106.97864 * 319.93540 * 25 24 23 27 27 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 28 28 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 29 29 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46654 * 90.00209 * 13 12 2 32 32 H 1.08993 * 109.47171 * 209.99894 * 13 12 2 33 33 H 1.08996 * 109.46700 * 330.00687 * 13 12 2 34 34 H 0.97008 * 119.99823 * 245.00522 * 17 14 12 35 35 H 1.08994 * 109.46991 * 285.00388 * 18 17 14 36 36 H 1.09005 * 109.46815 * 44.99735 * 18 17 14 37 37 H 1.08992 * 109.47453 * 185.00243 * 19 18 17 38 38 H 1.09006 * 109.47468 * 305.00303 * 19 18 17 39 39 H 1.08995 * 110.90681 * 338.63977 * 23 21 20 40 40 H 1.09006 * 110.90823 * 102.24753 * 23 21 20 41 41 H 1.08998 * 110.62031 * 278.52373 * 24 23 21 42 42 H 1.08995 * 110.61985 * 155.52378 * 24 23 21 43 43 H 1.09004 * 109.88407 * 267.09459 * 26 25 24 44 44 H 1.08997 * 109.87905 * 145.94109 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.1509 -0.0353 4.2817 19 6 0.6086 0.8074 5.4377 20 8 -0.2911 1.7933 4.9274 21 6 -0.8577 2.6382 5.9310 22 1 -0.9617 2.0959 6.8708 23 6 -2.2274 3.1892 5.4654 24 6 -2.1726 4.6567 5.9612 25 8 -0.7933 5.0305 5.7552 26 6 0.0087 3.8974 6.1280 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7011 1.1560 -3.4844 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2853 2.5001 33 1 0.6904 -2.3002 0.9845 34 1 1.9054 1.7750 3.4681 35 1 0.3188 -0.4567 3.7177 36 1 1.7669 -0.8425 4.6781 37 1 0.0809 0.1631 6.1407 38 1 1.4365 1.3002 5.9477 39 1 -2.3144 3.1484 4.3797 40 1 -3.0460 2.6485 5.9405 41 1 -2.4323 4.7148 7.0182 42 1 -2.8340 5.2875 5.3672 43 1 0.3071 3.9821 7.1730 44 1 0.8919 3.8430 5.4916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921883643.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:33 Heat of formation + Delta-G solvation = -162.886997 kcal Electronic energy + Delta-G solvation = -26649.315329 eV Core-core repulsion = 22729.061193 eV Total energy + Delta-G solvation = -3920.254136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93441 -37.73629 -36.62784 -36.12603 -35.19006 -34.87248 -32.54181 -31.60482 -29.28727 -29.04928 -28.24278 -25.55483 -25.08795 -23.35641 -22.43747 -21.61320 -20.74586 -18.81699 -17.65059 -17.33461 -16.84817 -16.71897 -16.50744 -16.06972 -15.87085 -15.24508 -15.06982 -14.65888 -14.28594 -13.77771 -13.59072 -13.39260 -13.20404 -13.02985 -12.77492 -12.37552 -12.21560 -11.98725 -11.94680 -11.71451 -11.66922 -11.46341 -11.30769 -11.21872 -11.13095 -11.00833 -10.94016 -10.74939 -10.43241 -10.24016 -10.19059 -9.98648 -9.70222 -9.31163 -9.17819 -8.41712 -7.93368 -6.03018 -4.09527 1.25585 3.22654 3.30900 3.37920 3.42109 3.55274 3.63713 4.15880 4.17315 4.43709 4.53695 4.59836 4.71717 4.81523 4.87958 4.99941 5.04593 5.14190 5.20799 5.28229 5.36769 5.40261 5.44749 5.52911 5.59960 5.68681 5.76716 6.02689 6.15206 6.38764 6.50916 6.66034 6.83867 6.85196 6.92770 7.08069 7.22006 7.54022 7.68535 7.83998 8.09386 8.32444 8.92615 9.55959 11.02575 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.003525 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.272189 B = 7940.512914 C = 8848.309297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.780 3.220 15 O -0.999 6.999 16 O -0.974 6.974 17 N -1.130 6.130 18 C 0.125 3.875 19 C 0.053 3.947 20 O -0.365 6.365 21 C 0.056 3.944 22 H 0.076 0.924 23 C -0.153 4.153 24 C 0.046 3.954 25 O -0.372 6.372 26 C 0.023 3.977 27 H 0.013 0.987 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.415 1.491 19.831 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.077 0.923 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.833 5.833 13 C -0.037 4.037 14 S 2.789 3.211 15 O -0.982 6.982 16 O -0.958 6.958 17 N -0.889 5.889 18 C -0.002 4.002 19 C -0.025 4.025 20 O -0.284 6.284 21 C -0.003 4.003 22 H 0.094 0.906 23 C -0.191 4.191 24 C -0.030 4.030 25 O -0.291 6.291 26 C -0.055 4.055 27 H 0.032 0.968 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.080 0.920 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.483 1.669 19.415 20.536 hybrid contribution -0.252 -0.356 -0.468 0.640 sum -6.734 1.313 18.946 20.150 Atomic orbital electron populations 1.22106 0.98251 0.99573 1.00756 1.18723 0.91296 0.93001 0.80409 0.92323 1.21346 1.31468 1.13023 0.90089 0.91992 1.24911 0.95010 0.95022 0.98982 1.69868 1.36552 1.22712 1.23712 0.86497 0.79240 0.79282 0.82379 1.20712 1.21153 1.19865 1.57678 1.69974 1.19726 1.35873 1.21154 1.01748 0.82259 0.98562 1.01915 0.73642 0.73136 0.72439 1.93529 1.69216 1.60836 1.74655 1.93616 1.74404 1.55925 1.71806 1.56131 1.62066 1.17606 1.53141 1.21217 0.95064 0.92757 0.91194 1.22815 0.92788 0.90688 0.96205 1.88078 1.61348 1.46442 1.32482 1.23530 0.93266 0.91497 0.91980 0.90613 1.23233 0.95702 0.95951 1.04220 1.23550 0.84412 0.94740 1.00315 1.88929 1.16652 1.35786 1.87692 1.23779 0.95737 0.85599 1.00354 0.96821 0.88955 0.94919 0.92742 0.93285 0.93507 0.90975 0.75145 0.90830 0.89261 0.91862 0.92355 0.88657 0.89546 0.92115 0.88436 0.91990 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.95 37.16 0.33 -3.05 16 2 C 0.27 6.66 2.62 -69.09 -0.18 6.47 16 3 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 4 C -0.52 -14.17 8.37 -34.44 -0.29 -14.45 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.08 11.31 55.43 0.63 -24.46 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.99 -20.57 3.12 -115.85 -0.36 -20.93 16 13 C 0.11 1.92 9.53 59.85 0.57 2.49 16 14 S 2.78 54.53 6.09 -107.50 -0.66 53.87 16 15 O -1.00 -20.43 16.68 -57.17 -0.95 -21.38 16 16 O -0.97 -23.04 16.70 -57.17 -0.95 -24.00 16 17 N -1.13 -16.81 6.02 -10.62 -0.06 -16.87 16 18 C 0.12 1.46 6.63 -4.05 -0.03 1.43 16 19 C 0.05 0.49 5.99 37.15 0.22 0.71 16 20 O -0.36 -4.06 9.76 -35.23 -0.34 -4.40 16 21 C 0.06 0.49 3.51 -25.20 -0.09 0.40 16 22 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 23 C -0.15 -1.26 6.90 -24.72 -0.17 -1.43 16 24 C 0.05 0.37 7.72 38.21 0.29 0.67 16 25 O -0.37 -4.27 11.52 -35.23 -0.41 -4.68 16 26 C 0.02 0.21 7.52 37.74 0.28 0.50 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 29 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.67 7.79 -51.93 -0.40 0.26 16 33 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 34 H 0.42 5.84 8.51 -34.47 -0.29 5.55 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.95 7.75 -51.93 -0.40 0.55 16 37 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.98 7.97 -51.93 -0.41 0.56 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -34.17 368.33 -8.76 -42.93 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.03 Total: 2.65 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 0.85 Total: -4.63 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.20 Total: -62.26 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -2.66 Total: -54.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.66 Total: 53.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.17 -8.76 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921883643.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.955 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds