Wall clock time and date at job start Fri Apr 10 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47432 * 2 1 4 4 C 1.50700 * 109.46899 * 119.99650 * 2 1 3 5 5 H 1.08003 * 120.00301 * 120.00075 * 4 2 1 6 6 C 1.37883 * 120.00019 * 300.00101 * 4 2 1 7 7 N 1.31514 * 120.00030 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99996 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47468 * 89.99771 * 8 6 4 10 10 H 1.48502 * 109.47370 * 209.99969 * 8 6 4 11 11 H 1.48506 * 109.47062 * 329.99594 * 8 6 4 12 12 N 1.46493 * 109.47467 * 239.99328 * 2 1 3 13 13 C 1.46494 * 120.00444 * 299.72792 * 12 2 1 14 14 S 1.65608 * 119.99916 * 120.00112 * 12 2 1 15 15 O 1.42100 * 106.40059 * 23.26834 * 14 12 2 16 16 O 1.42096 * 106.40050 * 156.18867 * 14 12 2 17 17 N 1.65599 * 107.21718 * 269.72928 * 14 12 2 18 18 C 1.46501 * 120.00418 * 64.99891 * 17 14 12 19 19 C 1.52998 * 109.47437 * 164.99857 * 18 17 14 20 20 O 1.42906 * 109.46878 * 64.99731 * 19 18 17 21 21 C 1.42901 * 113.99684 * 179.97438 * 20 19 18 22 22 H 1.08999 * 110.45777 * 27.39960 * 21 20 19 23 23 C 1.54507 * 110.50919 * 150.00497 * 21 20 19 24 24 C 1.54476 * 104.06426 * 118.64469 * 23 21 20 25 25 O 1.44419 * 104.80409 * 23.97853 * 24 23 21 26 26 C 1.44429 * 105.27499 * 319.48582 * 25 24 23 27 27 H 1.09000 * 109.46462 * 60.00600 * 1 2 3 28 28 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47439 * 300.00274 * 1 2 3 30 30 H 0.97000 * 120.00174 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47693 * 270.27497 * 13 12 2 32 32 H 1.09003 * 109.47006 * 30.27410 * 13 12 2 33 33 H 1.09004 * 109.47665 * 150.27102 * 13 12 2 34 34 H 0.97001 * 119.99869 * 244.99685 * 17 14 12 35 35 H 1.09005 * 109.46517 * 285.00137 * 18 17 14 36 36 H 1.08996 * 109.46781 * 44.99791 * 18 17 14 37 37 H 1.08999 * 109.47354 * 184.99768 * 19 18 17 38 38 H 1.09001 * 109.47009 * 305.00517 * 19 18 17 39 39 H 1.09002 * 110.51015 * 237.28758 * 23 21 20 40 40 H 1.08998 * 110.51189 * 359.97438 * 23 21 20 41 41 H 1.09000 * 110.37594 * 142.81069 * 24 23 21 42 42 H 1.09002 * 110.37191 * 265.03280 * 24 23 21 43 43 H 1.09000 * 110.37245 * 281.68423 * 26 25 24 44 44 H 1.08997 * 110.37303 * 159.34065 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8594 3.5567 8 14 0.6246 1.2792 2.6541 9 1 -0.8029 0.8728 2.6997 10 1 0.9757 1.9953 3.9067 11 1 0.8470 2.1766 1.4919 12 7 2.0184 -0.6907 -1.1960 13 6 1.6696 -2.0950 -1.4248 14 16 2.9706 0.1140 -2.2861 15 8 3.5745 1.1867 -1.5763 16 8 3.7167 -0.8787 -2.9767 17 7 1.9613 0.8026 -3.4040 18 6 1.0254 1.8536 -2.9969 19 6 0.4916 2.5702 -4.2388 20 8 -0.2818 1.6571 -5.0201 21 6 -0.8301 2.2294 -6.2092 22 1 -0.2080 3.0540 -6.5571 23 6 -0.9718 1.1557 -7.3112 24 6 -2.4887 1.1115 -7.5995 25 8 -2.9804 2.4055 -7.1876 26 6 -2.2783 2.7069 -5.9620 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9024 -0.5282 4.4376 31 1 2.4217 -2.7359 -0.9649 32 1 0.6951 -2.3039 -0.9832 33 1 1.6321 -2.2902 -2.4965 34 1 1.9898 0.5100 -4.3284 35 1 0.1949 1.4082 -2.4492 36 1 1.5400 2.5703 -2.3570 37 1 -0.1349 3.4083 -3.9336 38 1 1.3277 2.9390 -4.8330 39 1 -0.4216 1.4506 -8.2047 40 1 -0.6231 0.1885 -6.9491 41 1 -2.6685 0.9584 -8.6636 42 1 -2.9627 0.3208 -7.0178 43 1 -2.7203 2.1621 -5.1277 44 1 -2.2964 3.7793 -5.7683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921883646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:38 Heat of formation + Delta-G solvation = -153.927028 kcal Electronic energy + Delta-G solvation = -26741.832217 eV Core-core repulsion = 22821.966614 eV Total energy + Delta-G solvation = -3919.865603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.00936 -37.83641 -36.81722 -36.40870 -35.33085 -34.97810 -32.50484 -31.66474 -30.05818 -29.31832 -28.32545 -25.80842 -25.05122 -23.40991 -22.73420 -21.55806 -20.93227 -18.97062 -17.68503 -17.41443 -17.19431 -16.91288 -16.37120 -16.33153 -15.71304 -15.43109 -15.29343 -15.02396 -14.47783 -13.88740 -13.71178 -13.44263 -13.42812 -13.18156 -12.86570 -12.69528 -12.32388 -12.28258 -12.13629 -11.93214 -11.80722 -11.64186 -11.58372 -11.49521 -11.33229 -11.21229 -11.08649 -11.04550 -10.47236 -10.29406 -10.18240 -9.85668 -9.61143 -9.44224 -9.37548 -8.65079 -8.12886 -6.13619 -4.14191 1.08412 3.09682 3.20175 3.30210 3.34417 3.39889 3.69602 4.01139 4.13997 4.32821 4.35223 4.51744 4.66817 4.80551 4.81886 4.90434 4.97265 5.10358 5.15620 5.27164 5.31077 5.32946 5.43556 5.46394 5.49667 5.54762 5.63051 5.91130 6.03781 6.16489 6.25578 6.29882 6.33995 6.45419 6.56992 6.77623 6.84892 7.08862 7.27621 7.40543 7.62231 8.46116 8.91167 9.45946 10.99488 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.003695 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.322584 B = 7575.906799 C = 8427.757990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.238 3.762 3 H 0.056 0.944 4 C -0.522 4.522 5 H 0.082 0.918 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.984 5.984 13 C 0.111 3.889 14 S 2.782 3.218 15 O -0.975 6.975 16 O -0.990 6.990 17 N -1.130 6.130 18 C 0.119 3.881 19 C 0.054 3.946 20 O -0.369 6.369 21 C 0.055 3.945 22 H 0.078 0.922 23 C -0.157 4.157 24 C 0.045 3.955 25 O -0.374 6.374 26 C 0.023 3.977 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.266 0.734 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.413 0.587 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 6.272 -20.631 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.561 4.561 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.826 5.826 13 C -0.035 4.035 14 S 2.790 3.210 15 O -0.959 6.959 16 O -0.974 6.974 17 N -0.890 5.890 18 C -0.008 4.008 19 C -0.024 4.024 20 O -0.288 6.288 21 C -0.003 4.003 22 H 0.096 0.904 23 C -0.194 4.194 24 C -0.032 4.032 25 O -0.292 6.292 26 C -0.054 4.054 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.246 0.754 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.899 6.340 -20.276 22.665 hybrid contribution -0.867 0.711 -0.003 1.121 sum -8.767 7.050 -20.279 23.191 Atomic orbital electron populations 1.22557 0.99194 1.01621 0.98974 1.19088 0.90302 0.93605 0.83651 0.92595 1.21163 1.32500 1.14293 0.88188 0.89990 1.24920 0.95761 0.96573 0.95704 1.69874 1.45195 1.40149 0.97961 0.86944 0.80479 0.83824 0.77514 1.20390 1.22102 1.18931 1.57411 1.70153 1.20077 1.34982 1.21169 1.01903 0.81457 0.98993 1.01905 0.73431 0.73197 0.72471 1.93592 1.73949 1.55773 1.72542 1.93563 1.69113 1.59988 1.74758 1.56102 1.56756 1.51764 1.24342 1.21357 0.93170 0.90573 0.95693 1.22836 0.94560 0.92327 0.92650 1.88003 1.68685 1.37209 1.34944 1.23496 0.94630 0.96143 0.86062 0.90442 1.23041 0.97499 1.00830 0.98056 1.23417 0.92472 0.86240 1.01021 1.89143 1.64384 1.35646 1.40065 1.23965 0.91298 1.01704 0.88443 0.94757 0.92064 0.93223 0.92442 0.92817 0.90964 0.92994 0.75376 0.90384 0.88819 0.91721 0.92129 0.89798 0.88780 0.88857 0.91767 0.90858 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.66 37.16 0.32 -2.91 16 2 C 0.24 5.37 2.22 -69.08 -0.15 5.21 16 3 H 0.06 1.32 5.96 -51.93 -0.31 1.01 16 4 C -0.52 -14.25 8.95 -34.44 -0.31 -14.56 16 5 H 0.08 2.44 7.88 -52.48 -0.41 2.03 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 8 Si 0.88 20.99 24.37 -169.99 -4.14 16.85 16 9 H -0.28 -6.28 6.87 56.52 0.39 -5.89 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.26 -5.92 6.53 56.52 0.37 -5.55 16 12 N -0.98 -19.36 3.12 -115.86 -0.36 -19.73 16 13 C 0.11 1.92 9.52 59.84 0.57 2.49 16 14 S 2.78 51.39 6.10 -107.50 -0.66 50.74 16 15 O -0.98 -21.30 16.16 -57.17 -0.92 -22.22 16 16 O -0.99 -19.90 17.21 -57.17 -0.98 -20.88 16 17 N -1.13 -15.20 6.02 -10.61 -0.06 -15.26 16 18 C 0.12 1.42 6.63 -4.04 -0.03 1.40 16 19 C 0.05 0.49 5.97 37.16 0.22 0.71 16 20 O -0.37 -3.61 9.78 -35.23 -0.34 -3.95 16 21 C 0.06 0.44 3.61 -25.16 -0.09 0.35 16 22 H 0.08 0.52 7.82 -51.93 -0.41 0.12 16 23 C -0.16 -1.11 6.90 -25.17 -0.17 -1.29 16 24 C 0.05 0.33 7.63 37.93 0.29 0.62 16 25 O -0.37 -3.65 11.65 -35.23 -0.41 -4.06 16 26 C 0.02 0.19 7.38 37.94 0.28 0.47 16 27 H 0.03 0.55 6.19 -51.93 -0.32 0.23 16 28 H 0.06 1.16 6.67 -51.93 -0.35 0.81 16 29 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.19 6.44 -51.93 -0.33 0.85 16 33 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 34 H 0.41 4.74 8.51 -34.47 -0.29 4.44 16 35 H 0.08 0.96 6.19 -51.93 -0.32 0.64 16 36 H 0.09 1.15 7.75 -51.93 -0.40 0.75 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.70 8.00 -51.93 -0.42 0.28 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -34.38 357.61 -7.59 -41.97 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.70 Total: 2.70 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 0.83 Total: -5.53 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.35 Total: -61.00 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -2.66 Total: -51.12 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.14 Total: 16.85 kcal Atomic # 16 Polarization: 51.39 SS G_CDS: -0.66 Total: 50.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.38 -7.59 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921883646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.958 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds