Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47154 * 2 1 4 4 C 1.50699 * 109.46868 * 120.00238 * 2 1 3 5 5 H 1.07993 * 120.00199 * 119.99910 * 4 2 1 6 6 C 1.37878 * 119.99695 * 299.99231 * 4 2 1 7 7 N 1.31512 * 120.00279 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99993 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46724 * 60.00521 * 8 6 4 10 10 H 1.48496 * 109.47212 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47426 * 300.00800 * 8 6 4 12 12 N 1.46503 * 109.46682 * 239.99854 * 2 1 3 13 13 C 1.46498 * 119.99824 * 299.99928 * 12 2 1 14 14 S 1.65596 * 119.99738 * 120.00849 * 12 2 1 15 15 O 1.42102 * 106.39976 * 156.45916 * 14 12 2 16 16 O 1.42094 * 106.40496 * 23.53355 * 14 12 2 17 17 N 1.65599 * 107.21393 * 269.99349 * 14 12 2 18 18 C 1.46500 * 120.00288 * 65.00454 * 17 14 12 19 19 C 1.53001 * 109.47554 * 164.99952 * 18 17 14 20 20 O 1.42894 * 109.46952 * 64.99861 * 19 18 17 21 21 C 1.42903 * 113.99892 * 180.02562 * 20 19 18 22 22 H 1.08996 * 110.56373 * 332.67490 * 21 20 19 23 23 C 1.54517 * 110.51075 * 210.00152 * 21 20 19 24 24 C 1.54479 * 104.06037 * 241.35109 * 23 21 20 25 25 O 1.44433 * 104.80518 * 336.02227 * 24 23 21 26 26 C 1.44422 * 105.27452 * 40.51075 * 25 24 23 27 27 H 1.09008 * 109.46699 * 300.00554 * 1 2 3 28 28 H 1.09005 * 109.46738 * 59.99551 * 1 2 3 29 29 H 1.08990 * 109.47712 * 180.02562 * 1 2 3 30 30 H 0.97006 * 120.00333 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47247 * 270.00171 * 13 12 2 32 32 H 1.08993 * 109.47493 * 30.00333 * 13 12 2 33 33 H 1.08998 * 109.46796 * 150.00674 * 13 12 2 34 34 H 0.97003 * 120.00141 * 245.00260 * 17 14 12 35 35 H 1.09001 * 109.46833 * 44.99589 * 18 17 14 36 36 H 1.09008 * 109.46880 * 285.00090 * 18 17 14 37 37 H 1.09003 * 109.46716 * 304.99974 * 19 18 17 38 38 H 1.09000 * 109.47155 * 184.99676 * 19 18 17 39 39 H 1.08991 * 110.51174 * 359.97438 * 23 21 20 40 40 H 1.08995 * 110.51247 * 122.70989 * 23 21 20 41 41 H 1.08997 * 110.37024 * 94.85221 * 24 23 21 42 42 H 1.08995 * 110.37315 * 217.18852 * 24 23 21 43 43 H 1.08995 * 110.37333 * 200.65712 * 26 25 24 44 44 H 1.09001 * 110.37394 * 78.31441 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8298 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1210 4.0082 10 1 1.8259 -0.4205 5.2204 11 1 1.8257 -2.5202 4.0078 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4279 14 16 2.9704 0.1140 -2.2862 15 8 3.7117 -0.8792 -2.9814 16 8 3.5795 1.1827 -1.5748 17 7 1.9608 0.8089 -3.3997 18 6 1.0293 1.8618 -2.9875 19 6 0.4947 2.5836 -4.2262 20 8 -0.2834 1.6753 -5.0080 21 6 -0.8318 2.2522 -6.1948 22 1 -0.9772 3.3249 -6.0671 23 6 -2.1657 1.5654 -6.5642 24 6 -1.8982 0.9500 -7.9557 25 8 -0.8220 1.7394 -8.5077 26 6 0.0837 1.9706 -7.4068 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 0.7083 1.1610 3.4844 31 1 2.4156 -2.7378 -0.9716 32 1 0.6903 -2.3002 -0.9846 33 1 1.6237 -2.2853 -2.5001 34 1 1.9861 0.5188 -4.3250 35 1 1.5477 2.5751 -2.3468 36 1 0.1985 1.4176 -2.4391 37 1 1.3306 2.9514 -4.8213 38 1 -0.1283 3.4228 -3.9171 39 1 -2.4066 0.7855 -5.8420 40 1 -2.9704 2.2985 -6.6192 41 1 -1.5929 -0.0917 -7.8575 42 1 -2.7865 1.0284 -8.5824 43 1 0.7179 2.8330 -7.6118 44 1 0.6929 1.0853 -7.2243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921883647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -163.527321 kcal Electronic energy + Delta-G solvation = -26666.046576 eV Core-core repulsion = 22745.764673 eV Total energy + Delta-G solvation = -3920.281903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.93631 -37.73311 -36.66402 -36.14925 -35.20354 -34.84398 -32.57244 -31.58023 -29.27689 -29.09113 -28.17979 -25.57509 -25.14939 -23.37067 -22.56555 -21.48123 -20.77573 -18.83902 -17.59065 -17.36536 -16.87881 -16.70406 -16.30537 -16.14474 -15.85109 -15.36050 -15.00697 -14.56419 -14.22257 -14.00872 -13.62594 -13.51313 -13.20934 -13.02304 -12.79460 -12.35101 -12.25407 -11.94191 -11.92704 -11.71158 -11.57737 -11.44658 -11.33991 -11.21895 -11.14143 -10.99723 -10.93528 -10.79660 -10.45605 -10.28487 -10.22924 -10.01369 -9.76239 -9.27123 -9.22589 -8.45211 -7.96408 -6.07762 -4.13806 1.23989 3.19593 3.30580 3.34652 3.38258 3.54960 3.76565 4.14819 4.20913 4.40252 4.42835 4.59003 4.79633 4.87921 4.93485 5.00342 5.10680 5.22989 5.24041 5.34548 5.38105 5.40175 5.52391 5.59227 5.61393 5.65532 5.80355 6.06667 6.18635 6.35568 6.40892 6.64195 6.78164 6.80354 6.95350 6.99409 7.20597 7.50286 7.63681 7.78941 8.03686 8.27712 8.88179 9.51941 10.97921 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.003241 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.049521 B = 8637.020098 C = 9120.574105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.991 5.991 13 C 0.112 3.888 14 S 2.780 3.220 15 O -0.997 6.997 16 O -0.976 6.976 17 N -1.131 6.131 18 C 0.120 3.880 19 C 0.054 3.946 20 O -0.369 6.369 21 C 0.055 3.945 22 H 0.078 0.922 23 C -0.156 4.156 24 C 0.045 3.955 25 O -0.374 6.374 26 C 0.022 3.978 27 H 0.093 0.907 28 H 0.013 0.987 29 H 0.034 0.966 30 H 0.263 0.737 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.411 0.589 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 3.163 -17.154 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.834 5.834 13 C -0.034 4.034 14 S 2.789 3.211 15 O -0.981 6.981 16 O -0.959 6.959 17 N -0.890 5.890 18 C -0.006 4.006 19 C -0.023 4.023 20 O -0.288 6.288 21 C -0.003 4.003 22 H 0.096 0.904 23 C -0.194 4.194 24 C -0.032 4.032 25 O -0.293 6.293 26 C -0.055 4.055 27 H 0.111 0.889 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.244 0.756 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.214 3.304 -16.965 18.367 hybrid contribution -0.155 -0.423 0.677 0.814 sum -6.369 2.880 -16.288 17.724 Atomic orbital electron populations 1.22179 0.98324 0.99861 1.00567 1.18733 0.91231 0.92970 0.80658 0.92376 1.21304 1.31572 1.12997 0.90073 0.92015 1.24895 0.94962 0.95011 0.98970 1.69837 1.36555 1.22738 1.23865 0.86558 0.79359 0.79593 0.81893 1.20171 1.21237 1.20256 1.57675 1.70020 1.19936 1.35731 1.21113 1.01560 0.81959 0.98814 1.01919 0.73557 0.73189 0.72464 1.93546 1.69706 1.60088 1.74792 1.93592 1.73911 1.55982 1.72445 1.56097 1.57015 1.51756 1.24132 1.21353 0.93340 0.90459 0.95455 1.22851 0.94575 0.92391 0.92528 1.88007 1.68498 1.37513 1.34781 1.23481 0.93132 0.97925 0.85775 0.90443 1.23033 0.96604 1.01744 0.97986 1.23427 0.90879 0.95275 0.93588 1.89140 1.35074 1.72886 1.32173 1.23977 0.93206 1.02209 0.86099 0.88864 0.96855 0.94727 0.92670 0.93382 0.91048 0.93294 0.75638 0.88772 0.90148 0.92405 0.91610 0.88779 0.89825 0.91792 0.88884 0.88827 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.95 37.16 0.33 -2.94 16 2 C 0.27 6.36 2.62 -69.08 -0.18 6.18 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -13.89 8.37 -34.44 -0.29 -14.18 16 5 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.99 -20.36 3.12 -115.86 -0.36 -20.72 16 13 C 0.11 2.02 9.53 59.85 0.57 2.59 16 14 S 2.78 53.88 6.09 -107.50 -0.66 53.23 16 15 O -1.00 -20.76 17.21 -57.17 -0.98 -21.75 16 16 O -0.98 -22.31 16.17 -57.17 -0.92 -23.24 16 17 N -1.13 -16.50 6.02 -10.61 -0.06 -16.56 16 18 C 0.12 1.60 6.63 -4.04 -0.03 1.58 16 19 C 0.05 0.55 5.97 37.16 0.22 0.77 16 20 O -0.37 -3.96 9.78 -35.23 -0.34 -4.31 16 21 C 0.06 0.49 3.61 -25.16 -0.09 0.39 16 22 H 0.08 0.58 7.82 -51.93 -0.41 0.17 16 23 C -0.16 -1.22 6.90 -25.16 -0.17 -1.39 16 24 C 0.04 0.36 7.63 37.93 0.29 0.65 16 25 O -0.37 -3.85 11.65 -35.23 -0.41 -4.26 16 26 C 0.02 0.20 7.38 37.93 0.28 0.48 16 27 H 0.09 2.27 6.07 -51.92 -0.32 1.95 16 28 H 0.01 0.24 6.18 -51.93 -0.32 -0.08 16 29 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.24 6.43 -51.93 -0.33 0.90 16 33 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 34 H 0.41 5.18 8.51 -34.47 -0.29 4.89 16 35 H 0.09 1.30 7.75 -51.93 -0.40 0.90 16 36 H 0.08 1.13 6.18 -51.92 -0.32 0.81 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 39 H 0.09 0.78 8.00 -51.93 -0.42 0.36 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -32.60 364.42 -8.64 -41.24 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.83 Total: 2.85 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 0.84 Total: -4.25 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.20 Total: -61.01 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -2.66 Total: -53.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 53.88 SS G_CDS: -0.66 Total: 53.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.60 -8.64 -41.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921883647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.290 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds