Wall clock time and date at job start Fri Apr 10 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47258 * 2 1 4 4 C 1.46490 * 120.00316 * 84.99527 * 3 2 1 5 5 C 1.50703 * 109.47152 * 85.00349 * 4 3 2 6 6 H 1.07993 * 119.99754 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99776 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00357 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99687 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47565 * 89.99824 * 9 7 5 11 11 H 1.48500 * 109.47312 * 209.99987 * 9 7 5 12 12 H 1.48505 * 109.47367 * 329.99532 * 9 7 5 13 13 S 1.65600 * 119.99648 * 265.27454 * 3 2 1 14 14 O 1.42100 * 106.40531 * 23.26124 * 13 3 2 15 15 O 1.42097 * 106.40505 * 156.18513 * 13 3 2 16 16 N 1.65604 * 107.21646 * 269.72161 * 13 3 2 17 17 C 1.47154 * 120.98150 * 98.32066 * 16 13 3 18 18 C 1.53298 * 108.38459 * 129.44189 * 17 16 13 19 19 O 1.42960 * 109.22323 * 52.30144 * 18 17 16 20 20 C 1.42961 * 114.16797 * 297.42435 * 19 18 17 21 21 C 1.47149 * 120.98336 * 278.04218 * 16 13 3 22 22 H 1.08998 * 109.68135 * 110.83623 * 21 16 13 23 23 C 1.53004 * 109.68042 * 350.27909 * 21 16 13 24 24 O 1.42897 * 109.47072 * 289.50346 * 23 21 16 25 25 C 1.42904 * 113.99916 * 179.97438 * 24 23 21 26 26 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46961 * 300.00734 * 1 2 3 28 28 H 1.09005 * 109.46879 * 60.00693 * 1 2 3 29 29 H 1.08992 * 109.47397 * 239.99567 * 2 1 3 30 30 H 1.09005 * 109.46879 * 119.99307 * 2 1 3 31 31 H 1.09002 * 109.47319 * 205.00143 * 4 3 2 32 32 H 1.09003 * 109.47003 * 325.00097 * 4 3 2 33 33 H 0.97006 * 120.00036 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.68755 * 249.16388 * 17 16 13 35 35 H 1.09005 * 109.67932 * 9.72157 * 17 16 13 36 36 H 1.08998 * 109.51649 * 172.23011 * 18 17 16 37 37 H 1.09005 * 109.51447 * 292.33104 * 18 17 16 38 38 H 1.09001 * 109.51605 * 182.50237 * 20 19 18 39 39 H 1.09010 * 109.51042 * 302.60254 * 20 19 18 40 40 H 1.09001 * 109.47139 * 49.50165 * 23 21 16 41 41 H 1.09001 * 109.47078 * 169.50261 * 23 21 16 42 42 H 1.09000 * 109.46957 * 299.99948 * 25 24 23 43 43 H 1.08996 * 109.47206 * 59.99939 * 25 24 23 44 44 H 1.08999 * 109.47276 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1088 1.2638 5 6 3.4948 1.7890 1.8823 6 1 4.1720 1.1113 1.3840 7 6 3.8524 2.3609 3.0848 8 7 3.0275 3.1858 3.6918 9 14 5.5088 1.9639 3.8518 10 1 6.5227 2.9366 3.3714 11 1 5.4027 2.0491 5.3305 12 1 5.9177 0.5901 3.4633 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4411 -2.4440 15 8 2.2941 3.5203 -1.1997 16 7 4.0086 1.8227 -1.7182 17 6 4.4255 0.7429 -2.6270 18 6 5.4274 1.3187 -3.6344 19 8 6.4716 1.9920 -2.9273 20 6 6.0291 3.1123 -2.1572 21 6 5.0579 2.6321 -1.0786 22 1 5.5948 2.0264 -0.3485 23 6 4.4253 3.8389 -0.3827 24 8 3.9463 4.7586 -1.3659 25 6 3.3332 5.9276 -0.8184 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0922 3.1804 1.0754 32 1 1.3616 1.8099 1.9451 33 1 3.2793 3.5884 4.5377 34 1 4.8977 -0.0561 -2.0555 35 1 3.5562 0.3523 -3.1561 36 1 5.8526 0.5095 -4.2280 37 1 4.9184 2.0237 -4.2917 38 1 6.8872 3.5935 -1.6881 39 1 5.5232 3.8250 -2.8088 40 1 3.5941 3.5056 0.2386 41 1 5.1714 4.3305 0.2418 42 1 2.4792 5.6373 -0.2064 43 1 4.0562 6.4627 -0.2027 44 1 2.9961 6.5744 -1.6284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922056893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:44 Heat of formation + Delta-G solvation = -136.206926 kcal Electronic energy + Delta-G solvation = -29280.468768 eV Core-core repulsion = 25361.371566 eV Total energy + Delta-G solvation = -3919.097201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.27486 -37.48342 -36.23820 -35.99521 -35.03780 -34.45288 -32.81760 -31.73989 -30.00335 -27.53306 -26.66498 -26.12127 -24.98590 -23.18607 -22.51251 -21.70419 -20.91415 -18.19807 -17.24301 -17.12650 -16.48109 -16.20971 -16.02184 -15.43601 -15.14628 -15.00675 -14.76668 -14.61754 -14.12925 -13.99889 -13.57754 -13.42503 -13.24613 -12.89980 -12.16451 -12.10992 -12.05239 -11.93124 -11.70428 -11.51265 -11.31465 -11.26557 -11.18199 -11.03742 -11.02272 -10.80175 -10.59305 -10.45351 -10.34718 -10.17756 -10.03542 -9.82615 -9.63634 -8.63506 -8.53989 -8.42738 -8.06748 -6.20756 -4.27731 1.29247 3.17859 3.26803 3.28289 3.45092 3.99943 4.10928 4.28532 4.55637 4.89577 5.00204 5.07800 5.12945 5.28295 5.41045 5.43359 5.49720 5.61334 5.69621 5.74978 5.78748 5.87054 5.93563 5.96238 6.06986 6.10280 6.16172 6.28613 6.40198 6.48798 6.55254 6.59111 6.63298 6.71641 6.91459 7.28945 7.31186 7.38658 7.59174 7.77659 7.96996 8.05312 8.78135 9.38839 10.86319 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.007796 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.403531 B = 3590.611677 C = 4353.208325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.995 5.995 4 C 0.243 3.757 5 C -0.540 4.540 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.776 3.224 14 O -1.003 7.003 15 O -0.947 6.947 16 N -1.001 6.001 17 C 0.085 3.915 18 C 0.053 3.947 19 O -0.384 6.384 20 C 0.056 3.944 21 C 0.139 3.861 22 H 0.093 0.907 23 C 0.031 3.969 24 O -0.369 6.369 25 C 0.057 3.943 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.020 0.980 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 -2.360 -9.379 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.836 5.836 4 C 0.121 3.879 5 C -0.579 4.579 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.786 3.214 14 O -0.987 6.987 15 O -0.931 6.931 16 N -0.840 5.840 17 C -0.041 4.041 18 C -0.025 4.025 19 O -0.302 6.302 20 C -0.022 4.022 21 C 0.033 3.967 22 H 0.111 0.889 23 C -0.046 4.046 24 O -0.288 6.288 25 C -0.040 4.040 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.039 0.961 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.855 -1.828 -9.947 10.282 hybrid contribution 0.895 -0.362 1.293 1.614 sum 2.751 -2.190 -8.654 9.341 Atomic orbital electron populations 1.22202 0.96969 1.01365 1.02313 1.20935 0.93578 0.83066 1.01948 1.57881 1.78527 1.22919 1.24308 1.19219 0.97370 0.91965 0.79317 1.21545 1.02155 1.28148 1.06102 0.91877 1.24922 0.97105 0.94847 0.96740 1.69925 1.35779 1.29660 1.17096 0.86665 0.84159 0.79031 0.78676 1.20351 1.21119 1.19740 1.02235 0.72306 0.74085 0.72737 1.93489 1.70295 1.76815 1.58105 1.93725 1.85215 1.28932 1.85232 1.58318 1.24518 1.43628 1.57514 1.22029 0.99833 0.90016 0.92264 1.22853 0.89476 0.96835 0.93373 1.87888 1.33036 1.45246 1.64067 1.22889 0.98005 0.88022 0.93308 1.21520 0.89021 0.91432 0.94767 0.88911 1.23154 1.00187 0.89574 0.91685 1.87677 1.77303 1.31579 1.32221 1.22351 0.96689 0.86648 0.98351 0.92375 0.92118 0.92712 0.92170 0.90329 0.93218 0.94429 0.92522 0.91037 0.88420 0.88282 0.92856 0.88348 0.91389 0.87312 0.92893 0.93089 0.96116 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.13 2.27 6.06 -4.04 -0.02 2.24 16 3 N -1.00 -19.84 2.82 -115.66 -0.33 -20.17 16 4 C 0.24 5.63 4.72 -5.20 -0.02 5.61 16 5 C -0.54 -13.05 7.92 -34.44 -0.27 -13.32 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -23.73 13.29 55.43 0.74 -22.99 16 9 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 13 S 2.78 54.62 5.73 -107.50 -0.62 54.01 16 14 O -1.00 -20.48 15.56 -57.17 -0.89 -21.37 16 15 O -0.95 -20.33 9.35 -67.50 -0.63 -20.96 16 16 N -1.00 -17.47 3.40 -106.25 -0.36 -17.83 16 17 C 0.08 1.22 6.73 -3.53 -0.02 1.20 16 18 C 0.05 0.69 6.98 37.31 0.26 0.95 16 19 O -0.38 -5.82 10.74 -35.23 -0.38 -6.20 16 20 C 0.06 0.86 6.14 37.10 0.23 1.09 16 21 C 0.14 2.43 3.51 -67.64 -0.24 2.20 16 22 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 23 C 0.03 0.60 4.51 37.16 0.17 0.77 16 24 O -0.37 -7.10 7.10 -60.63 -0.43 -7.53 16 25 C 0.06 1.00 10.28 101.05 1.04 2.04 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.94 7.61 -51.93 -0.40 0.55 16 30 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 31 H 0.05 1.25 5.82 -51.93 -0.30 0.95 16 32 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.35 6.80 -51.93 -0.35 1.00 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.07 1.08 7.15 -51.92 -0.37 0.71 16 40 H 0.11 2.39 2.04 -51.93 -0.11 2.29 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.99 7.41 -51.93 -0.38 0.61 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -29.03 350.13 -8.20 -37.23 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.95 Total: 3.78 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 1.39 Total: 2.09 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: 0.05 Total: -60.99 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -2.33 Total: -56.06 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 16 Polarization: 54.62 SS G_CDS: -0.62 Total: 54.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.03 -8.20 -37.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922056893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.982 kcal (2) G-P(sol) polarization free energy of solvation -29.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds