Wall clock time and date at job start Fri Apr 10 2020 18:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47258 * 2 1 4 4 C 1.46490 * 120.00316 * 84.99527 * 3 2 1 5 5 C 1.50703 * 109.47152 * 85.00349 * 4 3 2 6 6 H 1.07993 * 119.99754 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99776 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00357 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99687 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47565 * 89.99824 * 9 7 5 11 11 H 1.48500 * 109.47312 * 209.99987 * 9 7 5 12 12 H 1.48505 * 109.47367 * 329.99532 * 9 7 5 13 13 S 1.65600 * 119.99648 * 265.27454 * 3 2 1 14 14 O 1.42100 * 106.40531 * 23.26124 * 13 3 2 15 15 O 1.42097 * 106.40505 * 156.18513 * 13 3 2 16 16 N 1.65604 * 107.21646 * 269.72161 * 13 3 2 17 17 C 1.47154 * 120.98150 * 98.32066 * 16 13 3 18 18 C 1.53298 * 108.38459 * 129.44189 * 17 16 13 19 19 O 1.42960 * 109.22323 * 52.30144 * 18 17 16 20 20 C 1.42961 * 114.16797 * 297.42435 * 19 18 17 21 21 C 1.47149 * 120.98336 * 278.04218 * 16 13 3 22 22 H 1.08998 * 109.68135 * 110.83623 * 21 16 13 23 23 C 1.53004 * 109.68042 * 350.27909 * 21 16 13 24 24 O 1.42897 * 109.47072 * 289.50346 * 23 21 16 25 25 C 1.42904 * 113.99916 * 179.97438 * 24 23 21 26 26 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46961 * 300.00734 * 1 2 3 28 28 H 1.09005 * 109.46879 * 60.00693 * 1 2 3 29 29 H 1.08992 * 109.47397 * 239.99567 * 2 1 3 30 30 H 1.09005 * 109.46879 * 119.99307 * 2 1 3 31 31 H 1.09002 * 109.47319 * 205.00143 * 4 3 2 32 32 H 1.09003 * 109.47003 * 325.00097 * 4 3 2 33 33 H 0.97006 * 120.00036 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.68755 * 249.16388 * 17 16 13 35 35 H 1.09005 * 109.67932 * 9.72157 * 17 16 13 36 36 H 1.08998 * 109.51649 * 172.23011 * 18 17 16 37 37 H 1.09005 * 109.51447 * 292.33104 * 18 17 16 38 38 H 1.09001 * 109.51605 * 182.50237 * 20 19 18 39 39 H 1.09010 * 109.51042 * 302.60254 * 20 19 18 40 40 H 1.09001 * 109.47139 * 49.50165 * 23 21 16 41 41 H 1.09001 * 109.47078 * 169.50261 * 23 21 16 42 42 H 1.09000 * 109.46957 * 299.99948 * 25 24 23 43 43 H 1.08996 * 109.47206 * 59.99939 * 25 24 23 44 44 H 1.08999 * 109.47276 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1088 1.2638 5 6 3.4948 1.7890 1.8823 6 1 4.1720 1.1113 1.3840 7 6 3.8524 2.3609 3.0848 8 7 3.0275 3.1858 3.6918 9 14 5.5088 1.9639 3.8518 10 1 6.5227 2.9366 3.3714 11 1 5.4027 2.0491 5.3305 12 1 5.9177 0.5901 3.4633 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4411 -2.4440 15 8 2.2941 3.5203 -1.1997 16 7 4.0086 1.8227 -1.7182 17 6 4.4255 0.7429 -2.6270 18 6 5.4274 1.3187 -3.6344 19 8 6.4716 1.9920 -2.9273 20 6 6.0291 3.1123 -2.1572 21 6 5.0579 2.6321 -1.0786 22 1 5.5948 2.0264 -0.3485 23 6 4.4253 3.8389 -0.3827 24 8 3.9463 4.7586 -1.3659 25 6 3.3332 5.9276 -0.8184 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0922 3.1804 1.0754 32 1 1.3616 1.8099 1.9451 33 1 3.2793 3.5884 4.5377 34 1 4.8977 -0.0561 -2.0555 35 1 3.5562 0.3523 -3.1561 36 1 5.8526 0.5095 -4.2280 37 1 4.9184 2.0237 -4.2917 38 1 6.8872 3.5935 -1.6881 39 1 5.5232 3.8250 -2.8088 40 1 3.5941 3.5056 0.2386 41 1 5.1714 4.3305 0.2418 42 1 2.4792 5.6373 -0.2064 43 1 4.0562 6.4627 -0.2027 44 1 2.9961 6.5744 -1.6284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922056893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:43 Heat of formation + Delta-G solvation = -156.222063 kcal Electronic energy + Delta-G solvation = -29281.336689 eV Core-core repulsion = 25361.371566 eV Total energy + Delta-G solvation = -3919.965123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.54059 -38.94955 -37.78925 -37.56461 -36.64573 -35.75519 -34.67729 -32.99345 -31.55239 -28.86492 -28.39365 -27.44749 -26.36438 -24.91283 -23.77177 -23.24065 -22.22956 -19.70717 -18.82487 -18.61015 -18.25986 -17.62560 -17.37620 -17.00247 -16.47828 -16.30306 -16.24265 -16.09124 -15.63810 -15.35284 -15.00671 -14.78739 -14.72645 -14.46634 -13.81326 -13.66353 -13.55330 -13.28793 -13.15328 -13.00270 -12.94537 -12.74720 -12.65537 -12.51252 -12.40955 -12.28503 -12.16380 -12.08784 -11.81192 -11.72496 -11.58334 -11.31549 -11.03199 -10.55290 -10.07061 -9.84119 -9.63178 -8.14330 -6.26499 -0.24199 1.42791 1.46413 1.53755 1.98248 2.43128 2.60249 2.88504 3.12513 3.17785 3.47201 3.68567 3.81160 3.99935 4.15172 4.20851 4.29126 4.40988 4.42260 4.46896 4.49972 4.65196 4.66442 4.69416 4.71871 4.77951 4.89952 4.96643 4.99317 5.07844 5.12438 5.14883 5.20528 5.32742 5.40581 5.53743 5.62423 5.79651 6.02257 6.13382 6.16438 6.49115 6.84784 7.43079 8.92853 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.007796 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.403531 B = 3590.611677 C = 4353.208325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.122 3.878 3 N -1.000 6.000 4 C 0.262 3.738 5 C -0.530 4.530 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.923 5.923 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.265 1.265 13 S 2.783 3.217 14 O -1.011 7.011 15 O -0.970 6.970 16 N -1.001 6.001 17 C 0.077 3.923 18 C 0.051 3.949 19 O -0.389 6.389 20 C 0.063 3.937 21 C 0.139 3.861 22 H 0.091 0.909 23 C 0.029 3.971 24 O -0.373 6.373 25 C 0.054 3.946 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.026 0.974 32 H 0.015 0.985 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.052 0.948 38 H 0.116 0.884 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.023 0.977 43 H 0.035 0.965 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -3.661 -10.603 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.003 4.003 3 N -0.840 5.840 4 C 0.138 3.862 5 C -0.570 4.570 6 H 0.086 0.914 7 C -0.178 4.178 8 N -0.562 5.562 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.189 1.189 13 S 2.794 3.206 14 O -0.995 6.995 15 O -0.953 6.953 16 N -0.842 5.842 17 C -0.048 4.048 18 C -0.027 4.027 19 O -0.307 6.307 20 C -0.015 4.015 21 C 0.033 3.967 22 H 0.109 0.891 23 C -0.048 4.048 24 O -0.292 6.292 25 C -0.043 4.043 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.054 0.946 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.497 -3.156 -11.197 12.147 hybrid contribution 0.334 0.019 1.611 1.645 sum 3.831 -3.137 -9.586 10.789 Atomic orbital electron populations 1.22179 0.95955 1.03170 1.01213 1.21183 0.94562 0.81732 1.02864 1.57832 1.79196 1.23884 1.23123 1.18767 0.96350 0.90930 0.80129 1.21691 1.02244 1.27284 1.05733 0.91429 1.25606 0.99975 0.94813 0.97374 1.70045 1.37588 1.31069 1.17543 0.85781 0.80711 0.79207 0.77457 1.19580 1.21610 1.18905 1.01887 0.72831 0.73511 0.72408 1.93471 1.71011 1.76873 1.58158 1.93702 1.85802 1.30407 1.85415 1.58160 1.23554 1.44562 1.57930 1.22331 1.00613 0.89544 0.92304 1.23072 0.89011 0.97709 0.92925 1.87891 1.33731 1.45072 1.64004 1.22823 0.97993 0.88079 0.92599 1.21535 0.89078 0.90589 0.95492 0.89138 1.23089 0.99342 0.90499 0.91874 1.87659 1.77280 1.31944 1.32325 1.22439 0.96101 0.86630 0.99110 0.89141 0.93352 0.93626 0.90200 0.90349 0.95651 0.96696 0.92684 0.89643 0.87848 0.84688 0.92942 0.86572 0.92030 0.89967 0.92688 0.95796 0.94640 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.10 10.24 71.98 0.74 -4.36 16 2 C 0.12 4.10 6.06 86.38 0.52 4.62 16 3 N -1.00 -39.99 2.82 -519.85 -1.47 -41.45 16 4 C 0.26 12.44 4.72 85.64 0.40 12.84 16 5 C -0.53 -25.70 7.92 25.60 0.20 -25.50 16 6 H 0.07 3.17 7.81 -2.91 -0.02 3.14 16 7 C 0.02 1.14 5.46 84.66 0.46 1.60 16 8 N -0.92 -50.42 13.29 21.45 0.28 -50.14 16 9 Si 0.94 39.97 29.54 68.60 2.03 42.00 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 13 S 2.78 108.78 5.73 -56.49 -0.32 108.45 16 14 O -1.01 -40.35 15.56 -128.00 -1.99 -42.34 16 15 O -0.97 -42.35 9.35 -118.12 -1.10 -43.46 16 16 N -1.00 -33.57 3.40 -490.08 -1.67 -35.23 16 17 C 0.08 2.02 6.73 86.35 0.58 2.60 16 18 C 0.05 1.17 6.98 72.08 0.50 1.67 16 19 O -0.39 -10.62 10.74 -148.98 -1.60 -12.22 16 20 C 0.06 1.82 6.14 71.94 0.44 2.26 16 21 C 0.14 4.70 3.51 44.83 0.16 4.86 16 22 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 23 C 0.03 1.13 4.51 71.98 0.32 1.46 16 24 O -0.37 -14.28 7.10 -124.69 -0.89 -15.16 16 25 C 0.05 1.91 10.28 113.37 1.17 3.07 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.04 1.46 8.14 -2.38 -0.02 1.45 16 29 H 0.08 2.35 7.61 -2.39 -0.02 2.33 16 30 H 0.08 2.62 8.11 -2.38 -0.02 2.60 16 31 H 0.03 1.35 5.82 -2.39 -0.01 1.33 16 32 H 0.01 0.77 8.11 -2.39 -0.02 0.75 16 33 H 0.26 13.81 8.31 -92.70 -0.77 13.04 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 2.59 6.80 -2.38 -0.02 2.58 16 36 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.06 1.86 7.15 -2.38 -0.02 1.84 16 40 H 0.08 3.69 2.04 -2.39 0.00 3.68 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.02 0.96 7.41 -2.39 -0.02 0.94 16 43 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -61.98 350.13 -0.24 -62.22 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.99 Total: 22.20 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.50 Total: 5.13 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -2.85 Total: -126.83 kcal Atomic # 8 Polarization: -107.60 SS G_CDS: -5.58 Total: -113.18 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 16 Polarization: 108.78 SS G_CDS: -0.32 Total: 108.45 kcal Total: -61.98 -0.24 -62.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922056893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.003 kcal (2) G-P(sol) polarization free energy of solvation -61.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds