Wall clock time and date at job start Fri Apr 10 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99749 * 2 1 4 4 C 1.52999 * 109.46702 * 173.99089 * 3 2 1 5 5 H 1.09005 * 109.70417 * 189.74043 * 4 3 2 6 6 C 1.53711 * 109.74942 * 310.50812 * 4 3 2 7 7 O 1.42958 * 109.15016 * 172.17004 * 6 4 3 8 8 C 1.42963 * 114.16348 * 297.28904 * 7 6 4 9 9 C 1.53296 * 109.22582 * 62.58210 * 8 7 6 10 10 N 1.47153 * 109.68353 * 69.20587 * 4 3 2 11 11 S 1.65595 * 120.98049 * 9.76116 * 10 4 3 12 12 O 1.42098 * 106.40615 * 335.26205 * 11 10 4 13 13 O 1.42109 * 106.40286 * 202.34347 * 11 10 4 14 14 N 1.65600 * 107.22242 * 88.80584 * 11 10 4 15 15 C 1.46505 * 119.99813 * 276.03161 * 14 11 10 16 16 C 1.46495 * 120.00230 * 96.02353 * 14 11 10 17 17 H 1.08998 * 109.47133 * 357.47845 * 16 14 11 18 18 C 1.53004 * 109.47489 * 237.47351 * 16 14 11 19 19 C 1.50701 * 109.46733 * 117.47854 * 16 14 11 20 20 H 1.07995 * 120.00660 * 32.94710 * 19 16 14 21 21 C 1.37887 * 119.99750 * 212.94703 * 19 16 14 22 22 N 1.31511 * 119.99873 * 3.64240 * 21 19 16 23 23 Si 1.86801 * 119.99982 * 183.63866 * 21 19 16 24 24 H 1.48503 * 109.46525 * 269.99958 * 23 21 19 25 25 H 1.48496 * 109.46960 * 150.00193 * 23 21 19 26 26 H 1.48499 * 109.47221 * 29.99969 * 23 21 19 27 27 H 1.09005 * 109.47239 * 304.50507 * 1 2 3 28 28 H 1.08999 * 109.47580 * 64.50496 * 1 2 3 29 29 H 1.09002 * 109.47439 * 184.50815 * 1 2 3 30 30 H 1.09000 * 109.47117 * 53.99202 * 3 2 1 31 31 H 1.09002 * 109.47078 * 293.99161 * 3 2 1 32 32 H 1.09000 * 109.65708 * 52.20131 * 6 4 3 33 33 H 1.09009 * 109.48266 * 292.03077 * 6 4 3 34 34 H 1.09000 * 109.51350 * 302.65611 * 8 7 6 35 35 H 1.09000 * 109.55640 * 182.52978 * 8 7 6 36 36 H 1.09001 * 109.68582 * 187.97398 * 9 8 7 37 37 H 1.09000 * 109.71177 * 67.43464 * 9 8 7 38 38 H 1.09003 * 109.46838 * 275.98055 * 15 14 11 39 39 H 1.08999 * 109.46918 * 35.97523 * 15 14 11 40 40 H 1.08992 * 109.47012 * 155.97405 * 15 14 11 41 41 H 1.08996 * 109.47038 * 183.67290 * 18 16 14 42 42 H 1.08997 * 109.47369 * 303.68063 * 18 16 14 43 43 H 1.09004 * 109.46577 * 63.67628 * 18 16 14 44 44 H 0.97004 * 120.00534 * 354.22514 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5281 1.1879 0.1510 5 1 3.9577 2.1745 0.3247 6 6 3.8624 0.2587 1.3290 7 8 5.2704 0.0119 1.3466 8 6 5.7604 -0.6652 0.1867 9 6 5.5219 0.2114 -1.0480 10 7 4.1041 0.6047 -1.0711 11 16 3.1856 0.4032 -2.4342 12 8 1.8357 0.3154 -1.9992 13 8 3.8224 -0.6096 -3.2011 14 7 3.3031 1.8003 -3.3154 15 6 2.4324 2.9371 -3.0056 16 6 4.2776 1.8995 -4.4047 17 1 4.8604 0.9799 -4.4557 18 6 5.2129 3.0825 -4.1462 19 6 3.5529 2.1081 -5.7095 20 1 2.6299 2.6684 -5.7311 21 6 4.0683 1.5834 -6.8758 22 7 5.1532 0.8409 -6.8398 23 14 3.2256 1.9272 -8.5071 24 1 2.2134 0.8735 -8.7729 25 1 4.2358 1.9290 -9.5954 26 1 2.5575 3.2522 -8.4496 27 1 -0.3634 0.5822 0.8469 28 1 -0.3634 0.4423 -0.9276 29 1 -0.3634 -1.0245 0.0808 30 1 1.6060 1.8832 0.8313 31 1 1.7762 1.8074 -0.9389 32 1 3.3288 -0.6848 1.2146 33 1 3.5645 0.7346 2.2633 34 1 5.2337 -1.6121 0.0682 35 1 6.8281 -0.8541 0.2983 36 1 5.7614 -0.3518 -1.9500 37 1 6.1489 1.1014 -0.9937 38 1 1.4731 2.8072 -3.5065 39 1 2.2754 2.9914 -1.9284 40 1 2.9011 3.8584 -3.3513 41 1 5.8960 3.1963 -4.9879 42 1 4.6243 3.9925 -4.0302 43 1 5.7848 2.9013 -3.2361 44 1 5.6383 0.7309 -6.0070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922057571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:53 Heat of formation + Delta-G solvation = -126.010724 kcal Electronic energy + Delta-G solvation = -28780.887642 eV Core-core repulsion = 24862.232581 eV Total energy + Delta-G solvation = -3918.655061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.54914 -37.79389 -36.43390 -36.23165 -35.07992 -34.71372 -32.69692 -31.99167 -29.27033 -27.80627 -26.48870 -25.85791 -25.37928 -24.67588 -22.85486 -21.30380 -20.85195 -18.46850 -17.46737 -17.40336 -16.83731 -16.42995 -16.36375 -15.47960 -15.37936 -15.25787 -14.97535 -14.42939 -14.18885 -13.82877 -13.74807 -13.64106 -13.38530 -13.04790 -12.62863 -12.28403 -12.00595 -11.93863 -11.67040 -11.56210 -11.53167 -11.41673 -11.28621 -11.09826 -10.98503 -10.84606 -10.76089 -10.58678 -10.33561 -10.16910 -10.04342 -9.96765 -9.08514 -9.00983 -8.70003 -8.43206 -7.87472 -6.43230 -4.16339 1.16229 3.35769 3.41327 3.44672 3.59210 3.76823 3.95243 4.18804 4.47720 4.67652 4.73384 4.74523 5.10332 5.16522 5.21581 5.25841 5.30539 5.38814 5.42248 5.53109 5.56728 5.58210 5.68020 5.73609 5.86300 5.99906 6.04084 6.07478 6.18452 6.22776 6.37817 6.39228 6.48469 6.65426 6.71217 7.03579 7.07624 7.31530 7.45412 7.64862 8.05142 8.37717 8.76688 9.54222 10.93768 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.005198 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.546428 B = 5385.100026 C = 6067.874267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.359 6.359 3 C 0.039 3.961 4 C 0.125 3.875 5 H 0.089 0.911 6 C 0.059 3.941 7 O -0.383 6.383 8 C 0.052 3.948 9 C 0.086 3.914 10 N -1.007 6.007 11 S 2.765 3.235 12 O -0.963 6.963 13 O -0.974 6.974 14 N -0.987 5.987 15 C 0.106 3.894 16 C 0.244 3.756 17 H 0.065 0.935 18 C -0.143 4.143 19 C -0.596 4.596 20 H 0.056 0.944 21 C 0.024 3.976 22 N -0.899 5.899 23 Si 1.071 2.929 24 H -0.287 1.287 25 H -0.283 1.283 26 H -0.287 1.287 27 H 0.024 0.976 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.020 0.980 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 2.504 16.135 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.278 6.278 3 C -0.038 4.038 4 C 0.018 3.982 5 H 0.107 0.893 6 C -0.019 4.019 7 O -0.301 6.301 8 C -0.026 4.026 9 C -0.040 4.040 10 N -0.846 5.846 11 S 2.777 3.223 12 O -0.946 6.946 13 O -0.958 6.958 14 N -0.829 5.829 15 C -0.041 4.041 16 C 0.141 3.859 17 H 0.083 0.917 18 C -0.203 4.203 19 C -0.637 4.637 20 H 0.074 0.926 21 C -0.183 4.183 22 N -0.535 5.535 23 Si 0.899 3.101 24 H -0.213 1.213 25 H -0.209 1.209 26 H -0.213 1.213 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.188 1.230 14.449 14.848 hybrid contribution -0.206 0.993 1.463 1.780 sum -3.394 2.223 15.912 16.422 Atomic orbital electron populations 1.22462 0.81435 1.01448 0.99326 1.87806 1.19518 1.25689 1.94766 1.23060 0.91031 0.87856 1.01902 1.21776 0.92301 0.97811 0.86279 0.89283 1.22939 0.81982 0.99610 0.97387 1.87894 1.22929 1.78627 1.40629 1.22906 1.00118 0.94519 0.85041 1.22045 0.81655 0.99796 1.00456 1.58635 1.21302 1.77803 1.26885 1.02753 0.73941 0.74023 0.71602 1.93646 1.34086 1.86340 1.80578 1.93569 1.77389 1.55894 1.68924 1.58159 1.48714 1.30676 1.45366 1.21247 0.94401 0.90842 0.97582 1.18950 0.86527 0.95748 0.84688 0.91701 1.22195 0.99136 1.00297 0.98695 1.22103 1.10897 1.38587 0.92096 0.92576 1.25896 0.96782 0.92641 1.02951 1.70754 1.17444 1.34307 1.31000 0.83525 0.75558 0.76030 0.74992 1.21312 1.20869 1.21345 0.95721 0.93336 0.90786 0.92984 0.90048 0.91274 0.88415 0.92552 0.87881 0.87953 0.90925 0.93232 0.93739 0.90964 0.92551 0.93698 0.96088 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 10.48 101.05 1.06 1.71 16 2 O -0.36 -5.56 7.10 -60.66 -0.43 -5.99 16 3 C 0.04 0.52 4.73 37.16 0.18 0.70 16 4 C 0.13 1.65 3.54 -67.21 -0.24 1.41 16 5 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 6 C 0.06 0.72 6.17 37.53 0.23 0.96 16 7 O -0.38 -5.05 10.74 -35.23 -0.38 -5.43 16 8 C 0.05 0.66 6.98 37.31 0.26 0.92 16 9 C 0.09 1.25 6.71 -3.53 -0.02 1.23 16 10 N -1.01 -16.05 3.39 -105.80 -0.36 -16.41 16 11 S 2.76 55.70 5.82 -107.50 -0.63 55.07 16 12 O -0.96 -19.13 9.82 -67.52 -0.66 -19.79 16 13 O -0.97 -23.90 15.16 -57.17 -0.87 -24.76 16 14 N -0.99 -20.36 3.12 -115.85 -0.36 -20.72 16 15 C 0.11 1.81 9.27 59.85 0.55 2.36 16 16 C 0.24 5.85 2.56 -69.08 -0.18 5.67 16 17 H 0.07 1.74 4.97 -51.93 -0.26 1.48 16 18 C -0.14 -2.99 9.19 37.16 0.34 -2.65 16 19 C -0.60 -16.09 8.31 -34.44 -0.29 -16.37 16 20 H 0.06 1.50 7.49 -52.49 -0.39 1.11 16 21 C 0.02 0.66 5.46 -17.82 -0.10 0.57 16 22 N -0.90 -26.74 13.62 55.43 0.75 -25.99 16 23 Si 1.07 24.87 29.91 -169.99 -5.08 19.79 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 27 H 0.02 0.26 8.11 -51.93 -0.42 -0.16 16 28 H 0.05 0.70 7.64 -51.93 -0.40 0.30 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.08 1.20 2.92 -51.93 -0.15 1.04 16 32 H 0.07 0.93 7.22 -51.93 -0.37 0.55 16 33 H 0.10 0.95 8.14 -51.92 -0.42 0.52 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.62 6.93 -51.93 -0.36 1.26 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.62 5.56 -51.93 -0.29 0.33 16 40 H 0.07 1.19 6.24 -51.93 -0.32 0.87 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.86 6.43 -51.93 -0.33 0.53 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.27 8.05 6.52 -40.82 -0.27 7.78 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -33.61 344.79 -7.61 -41.22 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.59 Total: 1.31 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 1.80 Total: -3.49 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.03 Total: -63.12 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -2.34 Total: -55.98 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.79 kcal Atomic # 16 Polarization: 55.70 SS G_CDS: -0.63 Total: 55.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.61 -7.61 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922057571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.795 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds