Wall clock time and date at job start Fri Apr 10 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99749 * 2 1 4 4 C 1.52999 * 109.46702 * 173.99089 * 3 2 1 5 5 H 1.09005 * 109.70417 * 189.74043 * 4 3 2 6 6 C 1.53711 * 109.74942 * 310.50812 * 4 3 2 7 7 O 1.42958 * 109.15016 * 172.17004 * 6 4 3 8 8 C 1.42963 * 114.16348 * 297.28904 * 7 6 4 9 9 C 1.53296 * 109.22582 * 62.58210 * 8 7 6 10 10 N 1.47153 * 109.68353 * 69.20587 * 4 3 2 11 11 S 1.65595 * 120.98049 * 9.76116 * 10 4 3 12 12 O 1.42098 * 106.40615 * 335.26205 * 11 10 4 13 13 O 1.42109 * 106.40286 * 202.34347 * 11 10 4 14 14 N 1.65600 * 107.22242 * 88.80584 * 11 10 4 15 15 C 1.46505 * 119.99813 * 276.03161 * 14 11 10 16 16 C 1.46495 * 120.00230 * 96.02353 * 14 11 10 17 17 H 1.08998 * 109.47133 * 357.47845 * 16 14 11 18 18 C 1.53004 * 109.47489 * 237.47351 * 16 14 11 19 19 C 1.50701 * 109.46733 * 117.47854 * 16 14 11 20 20 H 1.07995 * 120.00660 * 32.94710 * 19 16 14 21 21 C 1.37887 * 119.99750 * 212.94703 * 19 16 14 22 22 N 1.31511 * 119.99873 * 3.64240 * 21 19 16 23 23 Si 1.86801 * 119.99982 * 183.63866 * 21 19 16 24 24 H 1.48503 * 109.46525 * 269.99958 * 23 21 19 25 25 H 1.48496 * 109.46960 * 150.00193 * 23 21 19 26 26 H 1.48499 * 109.47221 * 29.99969 * 23 21 19 27 27 H 1.09005 * 109.47239 * 304.50507 * 1 2 3 28 28 H 1.08999 * 109.47580 * 64.50496 * 1 2 3 29 29 H 1.09002 * 109.47439 * 184.50815 * 1 2 3 30 30 H 1.09000 * 109.47117 * 53.99202 * 3 2 1 31 31 H 1.09002 * 109.47078 * 293.99161 * 3 2 1 32 32 H 1.09000 * 109.65708 * 52.20131 * 6 4 3 33 33 H 1.09009 * 109.48266 * 292.03077 * 6 4 3 34 34 H 1.09000 * 109.51350 * 302.65611 * 8 7 6 35 35 H 1.09000 * 109.55640 * 182.52978 * 8 7 6 36 36 H 1.09001 * 109.68582 * 187.97398 * 9 8 7 37 37 H 1.09000 * 109.71177 * 67.43464 * 9 8 7 38 38 H 1.09003 * 109.46838 * 275.98055 * 15 14 11 39 39 H 1.08999 * 109.46918 * 35.97523 * 15 14 11 40 40 H 1.08992 * 109.47012 * 155.97405 * 15 14 11 41 41 H 1.08996 * 109.47038 * 183.67290 * 18 16 14 42 42 H 1.08997 * 109.47369 * 303.68063 * 18 16 14 43 43 H 1.09004 * 109.46577 * 63.67628 * 18 16 14 44 44 H 0.97004 * 120.00534 * 354.22514 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5281 1.1879 0.1510 5 1 3.9577 2.1745 0.3247 6 6 3.8624 0.2587 1.3290 7 8 5.2704 0.0119 1.3466 8 6 5.7604 -0.6652 0.1867 9 6 5.5219 0.2114 -1.0480 10 7 4.1041 0.6047 -1.0711 11 16 3.1856 0.4032 -2.4342 12 8 1.8357 0.3154 -1.9992 13 8 3.8224 -0.6096 -3.2011 14 7 3.3031 1.8003 -3.3154 15 6 2.4324 2.9371 -3.0056 16 6 4.2776 1.8995 -4.4047 17 1 4.8604 0.9799 -4.4557 18 6 5.2129 3.0825 -4.1462 19 6 3.5529 2.1081 -5.7095 20 1 2.6299 2.6684 -5.7311 21 6 4.0683 1.5834 -6.8758 22 7 5.1532 0.8409 -6.8398 23 14 3.2256 1.9272 -8.5071 24 1 2.2134 0.8735 -8.7729 25 1 4.2358 1.9290 -9.5954 26 1 2.5575 3.2522 -8.4496 27 1 -0.3634 0.5822 0.8469 28 1 -0.3634 0.4423 -0.9276 29 1 -0.3634 -1.0245 0.0808 30 1 1.6060 1.8832 0.8313 31 1 1.7762 1.8074 -0.9389 32 1 3.3288 -0.6848 1.2146 33 1 3.5645 0.7346 2.2633 34 1 5.2337 -1.6121 0.0682 35 1 6.8281 -0.8541 0.2983 36 1 5.7614 -0.3518 -1.9500 37 1 6.1489 1.1014 -0.9937 38 1 1.4731 2.8072 -3.5065 39 1 2.2754 2.9914 -1.9284 40 1 2.9011 3.8584 -3.3513 41 1 5.8960 3.1963 -4.9879 42 1 4.6243 3.9925 -4.0302 43 1 5.7848 2.9013 -3.2361 44 1 5.6383 0.7309 -6.0070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922057571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:53 Heat of formation + Delta-G solvation = -151.477714 kcal Electronic energy + Delta-G solvation = -28781.991974 eV Core-core repulsion = 24862.232581 eV Total energy + Delta-G solvation = -3919.759392 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61718 -39.04927 -38.15174 -37.73369 -36.71985 -35.86080 -34.64925 -33.05625 -31.02831 -28.90356 -27.55215 -27.30841 -26.71736 -26.44632 -23.92789 -22.86588 -22.26140 -19.98689 -19.04108 -18.76960 -18.55495 -17.68094 -17.46787 -16.80920 -16.48253 -16.36008 -16.26038 -15.84079 -15.59303 -15.40204 -15.30488 -15.09622 -14.83042 -14.50208 -13.88203 -13.69607 -13.53657 -13.25403 -13.22270 -13.16238 -13.07226 -12.73902 -12.67548 -12.59167 -12.52387 -12.31213 -12.06500 -11.98595 -11.90263 -11.85976 -11.39957 -11.16837 -10.94053 -10.53610 -10.14254 -9.84395 -9.59236 -8.60863 -6.34578 -0.37768 1.52223 1.59869 1.77334 1.97499 2.53295 2.57622 2.81326 3.04043 3.20786 3.36490 3.56038 3.66225 3.98895 4.03948 4.11510 4.20747 4.31682 4.34819 4.39411 4.55569 4.56649 4.61000 4.64741 4.71656 4.72486 4.74802 4.81616 4.86472 4.94585 5.00652 5.03517 5.04753 5.08592 5.30844 5.48209 5.54553 5.92559 6.06404 6.08896 6.25830 6.44403 6.59541 7.44507 8.76006 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.005198 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.546428 B = 5385.100026 C = 6067.874267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.385 6.385 3 C 0.032 3.968 4 C 0.120 3.880 5 H 0.117 0.883 6 C 0.060 3.940 7 O -0.385 6.385 8 C 0.056 3.944 9 C 0.081 3.919 10 N -1.002 6.002 11 S 2.777 3.223 12 O -0.964 6.964 13 O -1.027 7.027 14 N -0.996 5.996 15 C 0.100 3.900 16 C 0.245 3.755 17 H 0.031 0.969 18 C -0.131 4.131 19 C -0.605 4.605 20 H 0.055 0.945 21 C -0.030 4.030 22 N -0.933 5.933 23 Si 1.112 2.888 24 H -0.284 1.284 25 H -0.281 1.281 26 H -0.263 1.263 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.131 0.869 34 H 0.047 0.953 35 H 0.132 0.868 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 4.325 18.551 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.304 6.304 3 C -0.045 4.045 4 C 0.014 3.986 5 H 0.135 0.865 6 C -0.018 4.018 7 O -0.303 6.303 8 C -0.022 4.022 9 C -0.045 4.045 10 N -0.844 5.844 11 S 2.789 3.211 12 O -0.947 6.947 13 O -1.011 7.011 14 N -0.837 5.837 15 C -0.045 4.045 16 C 0.140 3.860 17 H 0.048 0.952 18 C -0.191 4.191 19 C -0.645 4.645 20 H 0.073 0.927 21 C -0.230 4.230 22 N -0.571 5.571 23 Si 0.934 3.066 24 H -0.210 1.210 25 H -0.207 1.207 26 H -0.187 1.187 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.065 0.935 35 H 0.149 0.851 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.845 3.080 16.875 17.579 hybrid contribution -0.078 0.425 0.903 1.001 sum -3.923 3.506 17.777 18.540 Atomic orbital electron populations 1.22563 0.80576 1.02268 0.99651 1.87774 1.20633 1.27103 1.94888 1.23205 0.91179 0.87396 1.02725 1.22172 0.92353 0.99164 0.84874 0.86544 1.23053 0.81383 0.99018 0.98359 1.87901 1.23434 1.78503 1.40451 1.22954 1.01746 0.93474 0.84020 1.22214 0.80948 1.00772 1.00562 1.58275 1.21688 1.77985 1.26477 1.02099 0.73869 0.73236 0.71890 1.93663 1.34316 1.86243 1.80507 1.93503 1.78444 1.58134 1.71052 1.57912 1.48804 1.31776 1.45178 1.21467 0.93260 0.89785 1.00005 1.18712 0.87066 0.95389 0.84821 0.95165 1.21988 0.98502 0.99479 0.99083 1.22475 1.10678 1.37752 0.93616 0.92702 1.27230 0.96833 0.92286 1.06611 1.70867 1.19030 1.36793 1.30387 0.83022 0.74921 0.77081 0.71597 1.21029 1.20667 1.18719 0.92568 0.95282 0.90370 0.88993 0.91634 0.92814 0.85083 0.93509 0.85062 0.90285 0.89105 0.94197 0.90035 0.90193 0.94489 0.91936 0.93505 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 10.48 113.37 1.19 2.31 16 2 O -0.38 -11.17 7.10 -124.67 -0.88 -12.06 16 3 C 0.03 0.76 4.73 71.98 0.34 1.10 16 4 C 0.12 2.76 3.54 45.11 0.16 2.92 16 5 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 6 C 0.06 1.27 6.17 72.22 0.45 1.72 16 7 O -0.38 -8.98 10.74 -148.98 -1.60 -10.58 16 8 C 0.06 1.32 6.98 72.08 0.50 1.82 16 9 C 0.08 2.26 6.71 86.35 0.58 2.84 16 10 N -1.00 -30.60 3.39 -488.63 -1.66 -32.25 16 11 S 2.78 112.49 5.82 -56.49 -0.33 112.16 16 12 O -0.96 -38.03 9.82 -118.11 -1.16 -39.19 16 13 O -1.03 -52.74 15.16 -128.00 -1.94 -54.68 16 14 N -1.00 -40.74 3.12 -520.45 -1.62 -42.36 16 15 C 0.10 3.25 9.27 127.77 1.18 4.43 16 16 C 0.24 11.91 2.56 44.25 0.11 12.03 16 17 H 0.03 1.71 4.97 -2.39 -0.01 1.70 16 18 C -0.13 -5.36 9.19 71.98 0.66 -4.70 16 19 C -0.61 -33.13 8.31 25.60 0.21 -32.92 16 20 H 0.05 2.94 7.49 -2.91 -0.02 2.92 16 21 C -0.03 -1.72 5.46 84.66 0.46 -1.26 16 22 N -0.93 -57.59 13.62 21.45 0.29 -57.29 16 23 Si 1.11 50.51 29.91 68.60 2.05 52.56 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 27 H 0.06 0.99 8.11 -2.38 -0.02 0.98 16 28 H 0.03 0.80 7.64 -2.39 -0.02 0.78 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 1.45 8.11 -2.39 -0.02 1.43 16 31 H 0.07 1.75 2.92 -2.39 -0.01 1.74 16 32 H 0.05 1.32 7.22 -2.39 -0.02 1.31 16 33 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.08 2.60 6.93 -2.39 -0.02 2.58 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 2.03 5.56 -2.39 -0.01 2.01 16 40 H 0.08 2.46 6.24 -2.39 -0.01 2.44 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 2.30 6.43 -2.39 -0.02 2.28 16 43 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.26 16.17 6.52 -92.71 -0.60 15.56 16 Total: -1.00 -75.79 344.79 0.17 -75.63 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.17 Total: 17.79 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 5.85 Total: -9.72 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -2.99 Total: -131.91 kcal Atomic # 8 Polarization: -110.92 SS G_CDS: -5.59 Total: -116.50 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Atomic # 16 Polarization: 112.49 SS G_CDS: -0.33 Total: 112.16 kcal Total: -75.79 0.17 -75.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922057571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.852 kcal (2) G-P(sol) polarization free energy of solvation -75.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds