Wall clock time and date at job start Fri Apr 10 2020 18:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99790 * 2 1 4 4 C 1.52999 * 109.46981 * 186.57539 * 3 2 1 5 5 H 1.08994 * 109.68054 * 167.94744 * 4 3 2 6 6 C 1.53295 * 109.68112 * 47.43450 * 4 3 2 7 7 O 1.42968 * 109.22411 * 187.93857 * 6 4 3 8 8 C 1.42951 * 114.16695 * 62.58001 * 7 6 4 9 9 C 1.53301 * 109.22327 * 297.41885 * 8 7 6 10 10 N 1.47144 * 108.38308 * 52.30444 * 9 8 7 11 11 S 1.65603 * 120.98417 * 129.44499 * 10 9 8 12 12 O 1.42102 * 106.40302 * 213.40082 * 11 10 9 13 13 O 1.42102 * 106.40134 * 346.32016 * 11 10 9 14 14 N 1.65602 * 107.21846 * 99.85883 * 11 10 9 15 15 C 1.46494 * 120.00114 * 278.34293 * 14 11 10 16 16 C 1.46504 * 119.99703 * 98.34042 * 14 11 10 17 17 H 1.09003 * 109.47085 * 5.12703 * 16 14 11 18 18 C 1.53004 * 109.46899 * 125.12310 * 16 14 11 19 19 C 1.50698 * 109.47034 * 245.12352 * 16 14 11 20 20 H 1.07999 * 119.99867 * 0.02562 * 19 16 14 21 21 C 1.37875 * 120.00146 * 180.02562 * 19 16 14 22 22 N 1.31509 * 120.00299 * 180.02562 * 21 19 16 23 23 Si 1.86809 * 119.99754 * 359.97438 * 21 19 16 24 24 H 1.48500 * 109.46891 * 90.00458 * 23 21 19 25 25 H 1.48497 * 109.46966 * 210.00369 * 23 21 19 26 26 H 1.48496 * 109.47126 * 330.00364 * 23 21 19 27 27 H 1.09000 * 109.47614 * 65.09104 * 1 2 3 28 28 H 1.09002 * 109.47442 * 185.09985 * 1 2 3 29 29 H 1.09001 * 109.46744 * 305.09195 * 1 2 3 30 30 H 1.09001 * 109.46962 * 66.58527 * 3 2 1 31 31 H 1.08991 * 109.47767 * 306.57594 * 3 2 1 32 32 H 1.09004 * 109.51659 * 68.01084 * 6 4 3 33 33 H 1.09002 * 109.55457 * 307.88289 * 6 4 3 34 34 H 1.09004 * 109.51995 * 57.34201 * 8 7 6 35 35 H 1.09004 * 109.51346 * 177.50014 * 8 7 6 36 36 H 1.08997 * 109.67986 * 172.03027 * 9 8 7 37 37 H 1.09004 * 109.67671 * 292.58037 * 9 8 7 38 38 H 1.08997 * 109.47309 * 95.09757 * 15 14 11 39 39 H 1.09007 * 109.47064 * 215.09644 * 15 14 11 40 40 H 1.09007 * 109.47093 * 335.09134 * 15 14 11 41 41 H 1.08997 * 109.46400 * 179.97438 * 18 16 14 42 42 H 1.08997 * 109.47230 * 299.99971 * 18 16 14 43 43 H 1.09000 * 109.47091 * 59.99794 * 18 16 14 44 44 H 0.97006 * 120.00253 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5267 1.1885 -0.1652 5 1 3.9494 2.1701 -0.3794 6 6 3.8482 0.2262 -1.3143 7 8 5.2562 -0.0203 -1.3419 8 6 5.7619 -0.6581 -0.1668 9 6 5.5384 0.2590 1.0412 10 7 4.1207 0.6519 1.0696 11 16 3.2199 0.4943 2.4502 12 8 1.8979 0.1816 2.0333 13 8 3.9732 -0.3302 3.3289 14 7 3.1452 1.9885 3.1601 15 6 4.2567 2.4623 3.9885 16 6 1.9677 2.8367 2.9595 17 1 1.2145 2.2855 2.3964 18 6 1.3933 3.2415 4.3187 19 6 2.3634 4.0725 2.1932 20 1 3.3893 4.2119 1.8859 21 6 1.4157 5.0252 1.8844 22 7 1.7609 6.1034 1.2152 23 14 -0.3590 4.7836 2.4153 24 1 -0.5586 5.3795 3.7608 25 1 -1.2618 5.4475 1.4410 26 1 -0.6672 3.3319 2.4662 27 1 -0.3634 0.4328 -0.9320 28 1 -0.3634 -1.0236 0.0914 29 1 -0.3633 0.5908 0.8409 30 1 1.7848 1.8035 0.9431 31 1 1.5986 1.8865 -0.8252 32 1 3.5378 0.6712 -2.2597 33 1 3.3171 -0.7136 -1.1625 34 1 5.2377 -1.6009 -0.0098 35 1 6.8283 -0.8491 -0.2864 36 1 5.7903 -0.2737 1.9581 37 1 6.1637 1.1471 0.9484 38 1 4.9269 3.0724 3.3830 39 1 3.8667 3.0596 4.8127 40 1 4.8034 1.6073 4.3864 41 1 0.5174 3.8729 4.1694 42 1 1.1071 2.3477 4.8729 43 1 2.1464 3.7926 4.8818 44 1 1.0941 6.7734 0.9976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922057573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:59 Heat of formation + Delta-G solvation = -120.099443 kcal Electronic energy + Delta-G solvation = -29303.198108 eV Core-core repulsion = 25384.799379 eV Total energy + Delta-G solvation = -3918.398729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.35783 -37.64896 -36.46565 -36.33456 -35.20950 -34.56409 -32.59842 -31.82488 -30.07114 -27.62017 -26.36874 -25.94954 -25.11258 -25.00710 -22.64300 -21.14889 -20.79151 -18.22529 -17.59363 -17.25783 -16.58315 -16.39401 -16.16848 -15.54143 -15.20700 -15.09370 -14.90711 -14.77140 -14.18008 -14.06316 -13.59595 -13.47734 -13.38414 -12.83170 -12.36871 -12.34072 -12.15898 -12.10491 -11.92763 -11.65998 -11.51915 -11.39030 -11.31170 -11.23974 -11.06752 -10.89817 -10.60916 -10.52467 -10.21784 -10.21231 -9.86317 -9.67862 -9.49596 -8.82139 -8.70094 -8.55298 -8.11104 -6.24889 -4.26420 1.13126 3.14204 3.26275 3.27396 3.30480 3.92884 3.97267 4.23601 4.36359 4.77678 4.87676 4.95693 5.05515 5.22037 5.30612 5.38586 5.51097 5.56506 5.60310 5.70621 5.78540 5.89202 5.90179 5.97012 6.00534 6.08539 6.16336 6.21344 6.26213 6.31828 6.35683 6.36620 6.46472 6.56847 6.71762 6.85345 7.22521 7.23557 7.32455 7.55591 7.74760 8.34800 8.79531 9.35757 10.87246 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.006779 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.883529 B = 4129.572845 C = 4534.797259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.361 6.361 3 C 0.031 3.969 4 C 0.136 3.864 5 H 0.098 0.902 6 C 0.058 3.942 7 O -0.383 6.383 8 C 0.053 3.947 9 C 0.084 3.916 10 N -1.002 6.002 11 S 2.775 3.225 12 O -0.948 6.948 13 O -0.999 6.999 14 N -0.988 5.988 15 C 0.098 3.902 16 C 0.233 3.767 17 H 0.062 0.938 18 C -0.159 4.159 19 C -0.528 4.528 20 H 0.083 0.917 21 C 0.078 3.922 22 N -0.890 5.890 23 Si 0.872 3.128 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.263 1.263 27 H 0.024 0.976 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.060 0.940 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 -10.172 -1.614 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.280 6.280 3 C -0.046 4.046 4 C 0.030 3.970 5 H 0.116 0.884 6 C -0.020 4.020 7 O -0.301 6.301 8 C -0.025 4.025 9 C -0.042 4.042 10 N -0.841 5.841 11 S 2.786 3.214 12 O -0.932 6.932 13 O -0.983 6.983 14 N -0.829 5.829 15 C -0.048 4.048 16 C 0.129 3.871 17 H 0.080 0.920 18 C -0.218 4.218 19 C -0.567 4.567 20 H 0.101 0.899 21 C -0.126 4.126 22 N -0.527 5.527 23 Si 0.702 3.298 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.188 1.188 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.537 -10.921 -1.512 11.579 hybrid contribution -1.144 0.871 0.446 1.506 sum 2.393 -10.050 -1.066 10.386 Atomic orbital electron populations 1.22424 0.81866 1.01531 0.98870 1.87783 1.19089 1.26231 1.94868 1.23083 0.90896 0.86738 1.03908 1.21641 0.92311 0.98318 0.84727 0.88432 1.22926 0.81408 0.99440 0.98229 1.87902 1.23270 1.80330 1.38573 1.22866 0.99749 0.94663 0.85269 1.22061 0.82058 0.99688 1.00363 1.58316 1.20764 1.79079 1.25957 1.02223 0.73699 0.73258 0.72248 1.93729 1.35881 1.82905 1.80674 1.93499 1.73918 1.66564 1.64299 1.57583 1.26607 1.36509 1.62223 1.21285 0.88713 0.99537 0.95267 1.19200 0.82914 0.91417 0.93609 0.92038 1.22424 1.00437 0.99596 0.99388 1.21224 0.97886 1.02433 1.35154 0.89941 1.24883 0.98326 0.94859 0.94502 1.69866 1.34455 1.09370 1.38991 0.87098 0.85607 0.79130 0.77976 1.20274 1.22074 1.18751 0.95722 0.90924 0.93775 0.89122 0.92113 0.88215 0.91334 0.92845 0.88134 0.88293 0.90792 0.93189 0.90973 0.91998 0.93293 0.94701 0.92112 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 10.41 101.05 1.05 1.85 16 2 O -0.36 -6.46 6.85 -60.53 -0.41 -6.88 16 3 C 0.03 0.56 4.77 37.16 0.18 0.74 16 4 C 0.14 2.25 3.54 -67.42 -0.24 2.01 16 5 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 6 C 0.06 0.84 6.14 37.31 0.23 1.07 16 7 O -0.38 -5.53 10.74 -35.23 -0.38 -5.91 16 8 C 0.05 0.66 6.98 37.31 0.26 0.92 16 9 C 0.08 1.16 6.73 -3.53 -0.02 1.13 16 10 N -1.00 -16.64 3.40 -106.03 -0.36 -17.00 16 11 S 2.77 52.47 5.67 -107.50 -0.61 51.86 16 12 O -0.95 -19.39 10.14 -67.46 -0.68 -20.08 16 13 O -1.00 -19.81 15.32 -57.17 -0.88 -20.68 16 14 N -0.99 -19.24 3.12 -115.85 -0.36 -19.60 16 15 C 0.10 1.67 10.19 59.84 0.61 2.27 16 16 C 0.23 5.11 1.44 -69.08 -0.10 5.01 16 17 H 0.06 1.42 4.22 -51.93 -0.22 1.20 16 18 C -0.16 -3.29 8.52 37.16 0.32 -2.97 16 19 C -0.53 -13.13 8.65 -34.44 -0.30 -13.43 16 20 H 0.08 2.23 8.04 -52.49 -0.42 1.80 16 21 C 0.08 2.04 5.45 -17.82 -0.10 1.94 16 22 N -0.89 -24.94 13.96 55.43 0.77 -24.16 16 23 Si 0.87 20.29 24.37 -169.99 -4.14 16.15 16 24 H -0.28 -6.30 6.87 56.52 0.39 -5.91 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.26 -5.90 6.53 56.52 0.37 -5.53 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.77 7.98 -51.93 -0.41 0.36 16 30 H 0.09 1.87 2.58 -51.93 -0.13 1.74 16 31 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.02 7.15 -51.93 -0.37 0.65 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.31 6.78 -51.93 -0.35 0.95 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.18 6.22 -51.92 -0.32 0.86 16 40 H 0.06 0.95 7.05 -51.92 -0.37 0.58 16 41 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.18 6.57 -51.93 -0.34 0.84 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -30.27 336.46 -6.62 -36.88 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.52 Total: 3.80 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 1.89 Total: 0.55 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.05 Total: -60.77 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -2.35 Total: -53.54 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.14 Total: 16.15 kcal Atomic # 16 Polarization: 52.47 SS G_CDS: -0.61 Total: 51.86 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.27 -6.62 -36.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922057573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.215 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds