Wall clock time and date at job start Fri Apr 10 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.91614 * 2 1 4 4 C 1.54911 * 111.00561 * 236.09691 * 2 1 3 5 5 N 1.47425 * 104.83109 * 204.91649 * 4 2 1 6 6 C 1.34775 * 125.64585 * 204.08114 * 5 4 2 7 7 O 1.21620 * 120.00249 * 355.02806 * 6 5 4 8 8 C 1.47309 * 119.99822 * 175.02583 * 6 5 4 9 9 C 1.38323 * 120.73730 * 79.27781 * 8 6 5 10 10 N 1.34943 * 119.01731 * 179.77117 * 9 8 6 11 11 C 1.46506 * 119.70665 * 180.25073 * 10 9 8 12 12 C 1.34455 * 120.59334 * 0.51539 * 10 9 8 13 13 O 1.21903 * 119.20476 * 179.75675 * 12 10 9 14 14 N 1.33323 * 121.59941 * 359.73574 * 12 10 9 15 15 C 1.32226 * 120.92578 * 359.97438 * 14 12 10 16 16 O 1.35010 * 120.33097 * 180.02562 * 15 14 12 17 17 C 1.47019 * 108.70390 * 24.12993 * 5 4 2 18 18 C 1.54322 * 107.27036 * 358.94021 * 17 5 4 19 19 H 1.09002 * 110.71902 * 96.17077 * 18 17 5 20 20 N 1.46499 * 110.87146 * 219.37034 * 18 17 5 21 21 C 1.36938 * 120.00050 * 268.61114 * 20 18 17 22 22 H 1.07993 * 120.00221 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99666 * 179.97438 * 21 20 18 24 24 N 1.31611 * 120.00309 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99597 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47168 * 60.00769 * 25 23 21 27 27 H 1.48506 * 109.46828 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47436 * 300.00279 * 25 23 21 29 29 H 1.08995 * 109.47380 * 296.09736 * 1 2 3 30 30 H 1.09000 * 109.46888 * 56.10079 * 1 2 3 31 31 H 1.09001 * 109.47133 * 176.09693 * 1 2 3 32 32 H 1.09002 * 110.36611 * 323.75730 * 4 2 1 33 33 H 1.08997 * 110.36650 * 86.07697 * 4 2 1 34 34 H 1.07999 * 120.48626 * 0.02562 * 9 8 6 35 35 H 1.08999 * 109.47546 * 180.26267 * 11 10 9 36 36 H 1.09001 * 109.47039 * 300.26600 * 11 10 9 37 37 H 1.09003 * 109.46753 * 60.25750 * 11 10 9 38 38 H 0.96700 * 113.99990 * 359.97438 * 16 15 14 39 39 H 1.09000 * 109.88205 * 239.52104 * 17 5 4 40 40 H 1.09002 * 110.01038 * 118.42678 * 17 5 4 41 41 H 0.96997 * 119.99806 * 88.61172 * 20 18 17 42 42 H 0.97005 * 120.00586 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7733 6 6 4.4476 -1.5618 -1.5939 7 8 4.2746 -1.5882 -2.7975 8 6 5.7725 -1.8781 -1.0332 9 6 6.0321 -3.1244 -0.4923 10 7 7.2595 -3.3783 0.0077 11 6 7.5526 -4.6951 0.5792 12 6 8.2144 -2.4319 -0.0091 13 8 9.3130 -2.6871 0.4534 14 7 7.9890 -1.2211 -0.5196 15 6 6.8106 -0.9078 -1.0309 16 8 6.5957 0.3219 -1.5453 17 6 3.4674 -1.2741 0.6961 18 6 2.0861 -0.8079 1.2022 19 1 1.4467 -1.6632 1.4209 20 7 2.2246 0.0485 2.3827 21 6 2.1952 -0.5028 3.6358 22 1 2.0695 -1.5688 3.7540 23 6 2.3269 0.3088 4.7543 24 7 2.4796 1.6080 4.6104 25 14 2.2861 -0.4432 6.4638 26 1 3.3929 -1.4239 6.5998 27 1 2.4457 0.6282 7.4797 28 1 0.9867 -1.1315 6.6709 29 1 -0.3634 0.4520 0.9228 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0253 -0.0700 32 1 1.4519 -1.6704 -1.4024 33 1 2.1560 -0.1721 -2.0836 34 1 5.2650 -3.8844 -0.4742 35 1 8.5827 -4.7158 0.9348 36 1 6.8766 -4.8882 1.4122 37 1 7.4162 -5.4610 -0.1843 38 1 7.3629 0.9085 -1.4959 39 1 4.2426 -0.5997 1.0600 40 1 3.6661 -2.2884 1.0424 41 1 2.3371 1.0061 2.2766 42 1 2.5713 2.1752 5.3920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939738241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:02 Heat of formation + Delta-G solvation = -39.969759 kcal Electronic energy + Delta-G solvation = -27843.796642 eV Core-core repulsion = 23825.721397 eV Total energy + Delta-G solvation = -4018.075245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.07619 -39.92637 -38.87778 -37.62170 -36.90030 -34.87814 -34.16811 -32.76559 -31.45703 -30.76748 -28.00588 -27.62931 -26.43571 -25.18924 -24.17439 -23.62904 -21.71457 -20.06565 -20.04268 -19.90567 -18.52354 -17.62195 -17.25127 -16.88253 -16.49071 -16.06302 -15.67117 -15.37775 -14.82549 -14.72161 -14.50757 -14.04911 -13.86643 -13.63232 -13.59553 -13.24900 -13.19205 -12.95210 -12.65507 -12.48877 -12.18832 -11.87687 -11.60508 -11.21919 -11.15347 -11.07939 -10.82599 -10.68985 -10.39490 -10.36071 -10.32454 -10.08045 -9.88269 -9.77147 -9.08659 -8.81526 -8.48619 -7.18399 -5.92512 -3.24027 0.34462 1.22765 2.01387 2.51063 2.97189 3.07222 3.33760 3.38688 3.40494 3.49842 3.86930 4.12303 4.37531 4.46996 4.69294 4.84661 4.86188 4.97119 5.03367 5.06793 5.15670 5.27368 5.47729 5.53231 5.63767 5.65560 5.75438 5.82985 5.91450 5.98161 6.09477 6.16107 6.26092 6.39410 6.42866 6.54877 6.77086 6.86369 7.50028 7.53412 7.59975 7.89275 8.13224 8.24601 9.36593 9.89812 10.24299 11.29087 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.004529 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.601960 B = 6181.238435 C = 7830.239832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.084 0.916 4 C 0.115 3.885 5 N -0.602 5.602 6 C 0.599 3.401 7 O -0.535 6.535 8 C -0.282 4.282 9 C 0.240 3.760 10 N -0.518 5.518 11 C 0.053 3.947 12 C 0.656 3.344 13 O -0.531 6.531 14 N -0.610 5.610 15 C 0.491 3.509 16 O -0.434 6.434 17 C 0.072 3.928 18 C 0.178 3.822 19 H 0.070 0.930 20 N -0.710 5.710 21 C -0.253 4.253 22 H 0.071 0.929 23 C -0.005 4.005 24 N -0.927 5.927 25 Si 0.907 3.093 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.188 0.812 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.420 0.580 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.387 0.613 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 -9.815 -11.871 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.007 4.007 5 N -0.334 5.334 6 C 0.385 3.615 7 O -0.412 6.412 8 C -0.294 4.294 9 C 0.101 3.899 10 N -0.232 5.232 11 C -0.089 4.089 12 C 0.358 3.642 13 O -0.405 6.405 14 N -0.367 5.367 15 C 0.289 3.711 16 O -0.227 6.227 17 C -0.054 4.054 18 C 0.065 3.935 19 H 0.088 0.912 20 N -0.349 5.349 21 C -0.384 4.384 22 H 0.089 0.911 23 C -0.202 4.202 24 N -0.574 5.574 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.205 0.795 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.277 0.723 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.222 0.778 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.294 -9.805 -12.065 15.892 hybrid contribution 0.039 -0.187 1.122 1.138 sum 3.333 -9.992 -10.943 15.189 Atomic orbital electron populations 1.21601 0.93730 1.01541 1.02191 1.22675 0.96434 0.99917 0.94487 0.89738 1.22322 0.82189 0.98261 0.97973 1.48486 1.11852 1.64955 1.08127 1.16869 0.81922 0.77404 0.85351 1.90800 1.83226 1.52934 1.14217 1.19382 0.97403 0.94655 1.17987 1.22479 0.87378 0.95764 0.84319 1.46088 1.11228 1.16674 1.49235 1.22362 1.06208 0.80389 0.99946 1.17367 0.84799 0.81074 0.81007 1.90976 1.21511 1.78843 1.49184 1.69660 1.20926 1.19236 1.26909 1.20087 0.87069 0.84367 0.79605 1.85040 1.43530 1.20344 1.73832 1.23389 1.03759 1.01000 0.77276 1.21231 0.91305 0.93962 0.86980 0.91204 1.42352 1.86278 1.06216 1.00063 1.19169 1.43512 0.92490 0.83192 0.91056 1.24763 1.02057 0.95419 0.97986 1.69638 1.55521 1.02859 1.29370 0.86290 0.77878 0.77918 0.84185 1.21201 1.21581 1.21083 0.91267 0.93131 0.92841 0.91307 0.90708 0.79464 0.87196 0.89351 0.89672 0.72283 0.90999 0.92538 0.77813 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 9.31 37.16 0.35 -1.35 16 2 C -0.12 -1.65 3.27 -88.47 -0.29 -1.93 16 3 H 0.08 1.32 8.01 -51.93 -0.42 0.90 16 4 C 0.12 1.52 6.36 -2.53 -0.02 1.50 16 5 N -0.60 -8.55 3.33 -171.83 -0.57 -9.12 16 6 C 0.60 8.82 6.90 -12.57 -0.09 8.74 16 7 O -0.53 -9.33 17.40 5.26 0.09 -9.24 16 8 C -0.28 -3.67 4.84 -104.70 -0.51 -4.18 16 9 C 0.24 2.37 10.23 -16.15 -0.17 2.21 16 10 N -0.52 -5.71 2.96 -128.87 -0.38 -6.10 16 11 C 0.05 0.37 10.57 59.85 0.63 1.01 16 12 C 0.66 10.12 8.32 -88.50 -0.74 9.39 16 13 O -0.53 -9.68 16.42 5.01 0.08 -9.59 16 14 N -0.61 -9.39 10.38 -16.47 -0.17 -9.56 16 15 C 0.49 6.80 7.93 -15.90 -0.13 6.68 16 16 O -0.43 -5.33 13.08 -16.74 -0.22 -5.54 16 17 C 0.07 1.10 6.23 -3.07 -0.02 1.08 16 18 C 0.18 3.00 3.08 -66.10 -0.20 2.80 16 19 H 0.07 1.17 7.99 -51.93 -0.41 0.75 16 20 N -0.71 -15.74 5.16 -51.65 -0.27 -16.00 16 21 C -0.25 -6.34 9.96 -15.06 -0.15 -6.49 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 24 N -0.93 -26.36 13.06 55.49 0.72 -25.64 16 25 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.61 8.07 -51.93 -0.42 0.20 16 32 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 33 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.11 0.94 6.82 -51.93 -0.35 0.59 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.42 3.26 8.98 45.56 0.41 3.67 16 39 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.39 9.37 7.76 -40.82 -0.32 9.05 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -35.41 361.78 -6.54 -41.95 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.85 Total: 8.14 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: -1.42 Total: 19.22 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.67 Total: -66.42 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.41 -6.54 -41.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939738241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.981 kcal (2) G-P(sol) polarization free energy of solvation -35.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds