Wall clock time and date at job start Fri Apr 10 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.91614 * 2 1 4 4 C 1.54911 * 111.00561 * 236.09691 * 2 1 3 5 5 N 1.47425 * 104.83109 * 204.91649 * 4 2 1 6 6 C 1.34775 * 125.64585 * 204.08114 * 5 4 2 7 7 O 1.21620 * 120.00249 * 355.02806 * 6 5 4 8 8 C 1.47309 * 119.99822 * 175.02583 * 6 5 4 9 9 C 1.38323 * 120.73730 * 79.27781 * 8 6 5 10 10 N 1.34943 * 119.01731 * 179.77117 * 9 8 6 11 11 C 1.46506 * 119.70665 * 180.25073 * 10 9 8 12 12 C 1.34455 * 120.59334 * 0.51539 * 10 9 8 13 13 O 1.21903 * 119.20476 * 179.75675 * 12 10 9 14 14 N 1.33323 * 121.59941 * 359.73574 * 12 10 9 15 15 C 1.32226 * 120.92578 * 359.97438 * 14 12 10 16 16 O 1.35010 * 120.33097 * 180.02562 * 15 14 12 17 17 C 1.47019 * 108.70390 * 24.12993 * 5 4 2 18 18 C 1.54322 * 107.27036 * 358.94021 * 17 5 4 19 19 H 1.09002 * 110.71902 * 96.17077 * 18 17 5 20 20 N 1.46499 * 110.87146 * 219.37034 * 18 17 5 21 21 C 1.36938 * 120.00050 * 268.61114 * 20 18 17 22 22 H 1.07993 * 120.00221 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99666 * 179.97438 * 21 20 18 24 24 N 1.31611 * 120.00309 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99597 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47168 * 60.00769 * 25 23 21 27 27 H 1.48506 * 109.46828 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47436 * 300.00279 * 25 23 21 29 29 H 1.08995 * 109.47380 * 296.09736 * 1 2 3 30 30 H 1.09000 * 109.46888 * 56.10079 * 1 2 3 31 31 H 1.09001 * 109.47133 * 176.09693 * 1 2 3 32 32 H 1.09002 * 110.36611 * 323.75730 * 4 2 1 33 33 H 1.08997 * 110.36650 * 86.07697 * 4 2 1 34 34 H 1.07999 * 120.48626 * 0.02562 * 9 8 6 35 35 H 1.08999 * 109.47546 * 180.26267 * 11 10 9 36 36 H 1.09001 * 109.47039 * 300.26600 * 11 10 9 37 37 H 1.09003 * 109.46753 * 60.25750 * 11 10 9 38 38 H 0.96700 * 113.99990 * 359.97438 * 16 15 14 39 39 H 1.09000 * 109.88205 * 239.52104 * 17 5 4 40 40 H 1.09002 * 110.01038 * 118.42678 * 17 5 4 41 41 H 0.96997 * 119.99806 * 88.61172 * 20 18 17 42 42 H 0.97005 * 120.00586 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7733 6 6 4.4476 -1.5618 -1.5939 7 8 4.2746 -1.5882 -2.7975 8 6 5.7725 -1.8781 -1.0332 9 6 6.0321 -3.1244 -0.4923 10 7 7.2595 -3.3783 0.0077 11 6 7.5526 -4.6951 0.5792 12 6 8.2144 -2.4319 -0.0091 13 8 9.3130 -2.6871 0.4534 14 7 7.9890 -1.2211 -0.5196 15 6 6.8106 -0.9078 -1.0309 16 8 6.5957 0.3219 -1.5453 17 6 3.4674 -1.2741 0.6961 18 6 2.0861 -0.8079 1.2022 19 1 1.4467 -1.6632 1.4209 20 7 2.2246 0.0485 2.3827 21 6 2.1952 -0.5028 3.6358 22 1 2.0695 -1.5688 3.7540 23 6 2.3269 0.3088 4.7543 24 7 2.4796 1.6080 4.6104 25 14 2.2861 -0.4432 6.4638 26 1 3.3929 -1.4239 6.5998 27 1 2.4457 0.6282 7.4797 28 1 0.9867 -1.1315 6.6709 29 1 -0.3634 0.4520 0.9228 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0253 -0.0700 32 1 1.4519 -1.6704 -1.4024 33 1 2.1560 -0.1721 -2.0836 34 1 5.2650 -3.8844 -0.4742 35 1 8.5827 -4.7158 0.9348 36 1 6.8766 -4.8882 1.4122 37 1 7.4162 -5.4610 -0.1843 38 1 7.3629 0.9085 -1.4959 39 1 4.2426 -0.5997 1.0600 40 1 3.6661 -2.2884 1.0424 41 1 2.3371 1.0061 2.2766 42 1 2.5713 2.1752 5.3920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939738241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:01 Heat of formation + Delta-G solvation = -70.509981 kcal Electronic energy + Delta-G solvation = -27845.120965 eV Core-core repulsion = 23825.721397 eV Total energy + Delta-G solvation = -4019.399568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.07796 -41.09818 -39.90655 -38.86089 -38.01680 -35.85093 -35.82672 -34.05175 -32.70967 -32.22854 -29.13709 -28.71530 -27.49440 -26.16891 -25.80885 -24.76564 -23.02501 -21.35813 -21.05425 -21.00595 -19.48082 -19.07573 -18.69620 -17.88004 -17.55808 -17.23692 -16.96577 -16.44811 -16.21023 -15.71538 -15.64752 -15.32034 -15.12871 -15.03271 -14.60752 -14.49479 -14.40501 -14.05342 -13.70189 -13.55184 -13.34944 -12.98820 -12.82710 -12.81063 -12.63126 -12.28996 -12.24341 -12.12937 -11.99155 -11.65298 -11.52641 -11.37731 -11.34491 -10.98795 -10.87577 -9.84103 -9.66365 -9.03258 -7.92189 -5.21363 -0.54601 0.17048 1.10273 1.42125 1.51124 1.52148 1.58111 1.95423 2.05061 2.43467 2.58343 2.96972 3.21663 3.40159 3.45409 3.73029 3.87070 3.92732 4.02114 4.07071 4.18937 4.29236 4.39487 4.42306 4.50322 4.67368 4.74364 4.76866 4.87641 4.92852 4.95782 5.04930 5.15863 5.19454 5.25599 5.39353 5.54401 5.58863 6.00493 6.28050 6.41871 6.46190 6.83284 6.99364 7.36123 8.09483 8.31531 9.30731 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.004529 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.601960 B = 6181.238435 C = 7830.239832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.609 3.391 7 O -0.563 6.563 8 C -0.312 4.312 9 C 0.271 3.729 10 N -0.510 5.510 11 C 0.045 3.955 12 C 0.646 3.354 13 O -0.573 6.573 14 N -0.640 5.640 15 C 0.486 3.514 16 O -0.441 6.441 17 C 0.087 3.913 18 C 0.171 3.829 19 H 0.082 0.918 20 N -0.723 5.723 21 C -0.237 4.237 22 H 0.086 0.914 23 C -0.071 4.071 24 N -0.969 5.969 25 Si 0.965 3.035 26 H -0.279 1.279 27 H -0.304 1.304 28 H -0.275 1.275 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.434 0.566 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.373 0.627 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 -12.853 -12.597 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 N -0.330 5.330 6 C 0.395 3.605 7 O -0.442 6.442 8 C -0.324 4.324 9 C 0.130 3.870 10 N -0.221 5.221 11 C -0.095 4.095 12 C 0.348 3.652 13 O -0.451 6.451 14 N -0.400 5.400 15 C 0.287 3.713 16 O -0.238 6.238 17 C -0.039 4.039 18 C 0.060 3.940 19 H 0.100 0.900 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.104 0.896 23 C -0.264 4.264 24 N -0.619 5.619 25 Si 0.794 3.206 26 H -0.205 1.205 27 H -0.231 1.231 28 H -0.201 1.201 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.257 0.743 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.294 0.706 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.205 0.795 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.863 -12.896 -12.833 18.289 hybrid contribution 0.441 0.712 1.241 1.497 sum 2.304 -12.184 -11.592 16.975 Atomic orbital electron populations 1.21554 0.92291 1.02880 1.01744 1.22576 0.97561 0.98735 0.93879 0.91676 1.22384 0.81943 0.98996 0.97038 1.48455 1.12337 1.64730 1.07511 1.16909 0.82138 0.76628 0.84794 1.90789 1.83708 1.54271 1.15388 1.19383 0.96552 0.96075 1.20415 1.23201 0.87368 0.95443 0.80989 1.46127 1.10779 1.17207 1.48031 1.22739 1.05814 0.78922 1.01994 1.17484 0.85111 0.81751 0.80896 1.90939 1.23309 1.79713 1.51169 1.69534 1.22041 1.20157 1.28232 1.20240 0.86973 0.84850 0.79286 1.85016 1.44701 1.20437 1.73620 1.23011 1.01431 1.01620 0.77875 1.21478 0.92452 0.93953 0.86106 0.90025 1.42510 1.86461 1.06143 1.00970 1.19617 1.40072 0.92988 0.84175 0.89641 1.25484 1.03724 0.95810 1.01371 1.69797 1.58526 1.04176 1.29420 0.85347 0.78243 0.76768 0.80210 1.20510 1.23112 1.20078 0.93763 0.91207 0.90919 0.88747 0.90749 0.74267 0.89171 0.86634 0.85945 0.70564 0.93842 0.89938 0.79496 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.31 71.98 0.67 -2.29 16 2 C -0.11 -2.89 3.27 -9.40 -0.03 -2.92 16 3 H 0.06 2.02 8.01 -2.39 -0.02 2.00 16 4 C 0.12 2.78 6.36 86.86 0.55 3.33 16 5 N -0.60 -15.44 3.33 -815.80 -2.71 -18.16 16 6 C 0.61 16.53 6.90 86.63 0.60 17.12 16 7 O -0.56 -18.52 17.40 -4.10 -0.07 -18.59 16 8 C -0.31 -7.52 4.84 -19.91 -0.10 -7.61 16 9 C 0.27 4.35 10.23 84.23 0.86 5.21 16 10 N -0.51 -9.96 2.96 -679.94 -2.01 -11.97 16 11 C 0.05 0.48 10.57 127.77 1.35 1.83 16 12 C 0.65 19.74 8.32 179.61 1.49 21.23 16 13 O -0.57 -21.30 16.42 -5.00 -0.08 -21.38 16 14 N -0.64 -19.93 10.38 -438.19 -4.55 -24.48 16 15 C 0.49 13.36 7.93 85.59 0.68 14.03 16 16 O -0.44 -10.97 13.08 -82.82 -1.08 -12.05 16 17 C 0.09 2.44 6.23 86.73 0.54 2.98 16 18 C 0.17 5.41 3.08 46.18 0.14 5.55 16 19 H 0.08 2.44 7.99 -2.39 -0.02 2.42 16 20 N -0.72 -31.73 5.16 -317.34 -1.64 -33.36 16 21 C -0.24 -11.63 9.96 84.03 0.84 -10.79 16 22 H 0.09 3.88 7.83 -2.91 -0.02 3.86 16 23 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 24 N -0.97 -56.43 13.06 21.65 0.28 -56.14 16 25 Si 0.96 43.21 29.55 68.60 2.03 45.24 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.41 8.07 -2.39 -0.02 1.39 16 32 H 0.09 1.80 7.98 -2.39 -0.02 1.79 16 33 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 34 H 0.24 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.09 1.42 6.82 -2.39 -0.02 1.40 16 36 H 0.12 0.66 8.14 -2.39 -0.02 0.65 16 37 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.43 7.07 8.98 -74.06 -0.67 6.41 16 39 H 0.04 1.50 8.03 -2.39 -0.02 1.49 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.37 18.41 7.76 -92.71 -0.72 17.69 16 42 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -79.79 361.78 -2.08 -81.87 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.31 Total: 24.68 kcal Atomic # 6 Polarization: 36.29 SS G_CDS: 8.06 Total: 44.35 kcal Atomic # 7 Polarization: -133.49 SS G_CDS: -10.63 Total: -144.12 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -1.24 Total: -52.02 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -79.79 -2.08 -81.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939738241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.359 kcal (2) G-P(sol) polarization free energy of solvation -79.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds