Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47591 * 2 1 4 4 C 1.34770 * 120.00243 * 265.90932 * 3 2 1 5 5 O 1.21619 * 119.99809 * 184.78761 * 4 3 2 6 6 C 1.47306 * 119.99883 * 4.78592 * 4 3 2 7 7 C 1.38322 * 120.73682 * 280.79774 * 6 4 3 8 8 N 1.34949 * 119.02334 * 179.97438 * 7 6 4 9 9 C 1.46498 * 119.70534 * 180.02562 * 8 7 6 10 10 C 1.34453 * 120.58616 * 359.97438 * 8 7 6 11 11 O 1.21912 * 119.19746 * 180.02562 * 10 8 7 12 12 N 1.33320 * 121.59900 * 0.02752 * 10 8 7 13 13 C 1.32217 * 120.93191 * 359.71925 * 12 10 8 14 14 O 1.35016 * 120.33148 * 180.28980 * 13 12 10 15 15 C 1.46510 * 119.99490 * 85.90078 * 3 2 1 16 16 C 1.53499 * 114.19739 * 120.00712 * 15 3 2 17 17 N 1.47063 * 87.98824 * 87.51877 * 16 15 3 18 18 C 1.36930 * 136.05771 * 207.08309 * 17 16 15 19 19 H 1.07998 * 120.00491 * 8.63478 * 18 17 16 20 20 C 1.38814 * 120.00044 * 188.64066 * 18 17 16 21 21 N 1.31620 * 119.99860 * 195.52771 * 20 18 17 22 22 Si 1.86804 * 120.00147 * 15.51978 * 20 18 17 23 23 H 1.48493 * 109.47168 * 270.00769 * 22 20 18 24 24 H 1.48499 * 109.46833 * 30.00481 * 22 20 18 25 25 H 1.48498 * 109.47037 * 150.00445 * 22 20 18 26 26 C 1.47066 * 87.88513 * 27.33823 * 17 16 15 27 27 H 1.09002 * 109.47243 * 300.00309 * 1 2 3 28 28 H 1.09003 * 109.47177 * 59.99246 * 1 2 3 29 29 H 1.08993 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47004 * 240.00425 * 2 1 3 31 31 H 1.09003 * 109.47177 * 120.00754 * 2 1 3 32 32 H 1.08007 * 120.48906 * 359.95470 * 7 6 4 33 33 H 1.09001 * 109.47257 * 89.99760 * 9 8 7 34 34 H 1.09003 * 109.46983 * 209.99892 * 9 8 7 35 35 H 1.09004 * 109.47283 * 329.99436 * 9 8 7 36 36 H 0.96696 * 114.00384 * 5.25094 * 14 13 12 37 37 H 1.08994 * 113.28276 * 346.93970 * 15 3 2 38 38 H 1.08996 * 113.47273 * 332.73432 * 16 15 3 39 39 H 1.09003 * 113.46164 * 202.30022 * 16 15 3 40 40 H 0.96995 * 120.00360 * 354.92884 * 21 20 18 41 41 H 1.09000 * 113.47113 * 87.43811 * 26 17 16 42 42 H 1.09002 * 113.47162 * 217.87872 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3216 1.9888 -1.1641 5 8 2.8088 3.1031 -1.1596 6 6 2.0629 1.3032 -2.4420 7 6 2.9278 0.3306 -2.9102 8 7 2.6570 -0.2758 -4.0850 9 6 3.5627 -1.3083 -4.5947 10 6 1.5630 0.0586 -4.7913 11 8 1.3426 -0.5057 -5.8493 12 7 0.7133 0.9924 -4.3629 13 6 0.9161 1.6219 -3.2180 14 8 0.0446 2.5614 -2.7928 15 6 2.1771 2.1020 1.2656 16 6 3.6112 2.5717 1.5466 17 7 3.3016 3.7976 0.7956 18 6 4.0123 4.7134 0.0669 19 1 5.0505 4.5293 -0.1667 20 6 3.3985 5.8787 -0.3715 21 7 3.9632 6.6063 -1.3117 22 14 1.7708 6.4140 0.3727 23 1 0.6526 5.8259 -0.4076 24 1 1.6923 5.9461 1.7798 25 1 1.6738 7.8954 0.3375 26 6 1.8936 3.6106 1.1771 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 3.8071 0.0606 -2.3441 33 1 3.2463 -2.2838 -4.2251 34 1 3.5383 -1.3073 -5.6845 35 1 4.5773 -1.1022 -4.2538 36 1 -0.7402 2.6512 -3.3505 37 1 1.6965 1.6044 2.1079 38 1 4.3719 1.9521 1.0717 39 1 3.8106 2.7487 2.6036 40 1 4.8422 6.3692 -1.6463 41 1 1.6402 4.0615 2.1365 42 1 1.1909 3.8761 0.3873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957378263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = 58.237618 kcal Electronic energy + Delta-G solvation = -29367.817625 eV Core-core repulsion = 25354.000972 eV Total energy + Delta-G solvation = -4013.816653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.95654 -40.10376 -38.77661 -37.17276 -36.46433 -35.27276 -34.71423 -32.10297 -31.32519 -30.00210 -27.89341 -27.44659 -25.23187 -25.13249 -24.15637 -23.05055 -22.70178 -20.45095 -19.87202 -18.60321 -18.33347 -17.26392 -17.22093 -16.79205 -16.34691 -15.72793 -15.56996 -14.72741 -14.66718 -14.49919 -14.36423 -14.05157 -13.77242 -13.64974 -13.52099 -13.44538 -13.14443 -13.07841 -12.93087 -12.26581 -11.90536 -11.66017 -11.53132 -11.26162 -11.06473 -10.97006 -10.79037 -10.42071 -10.20648 -10.09089 -10.02064 -9.52029 -9.16548 -8.89818 -8.61762 -8.19818 -8.01714 -6.68454 -5.97782 -2.82374 0.48452 1.40933 2.17903 2.97575 3.22978 3.34303 3.58335 3.62973 3.65354 3.78585 4.02956 4.27116 4.54184 4.73200 4.86632 4.87247 4.90518 4.94545 5.04792 5.10989 5.22886 5.26858 5.32507 5.43211 5.59363 5.62284 5.73573 5.80764 5.84674 6.06597 6.12910 6.14025 6.28646 6.36209 6.52020 6.63156 7.03808 7.22264 7.39138 7.63092 7.84588 8.01553 8.50814 8.94145 9.27302 9.86042 10.68481 11.53435 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.005332 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.437734 B = 5250.400283 C = 5768.252203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.113 3.887 3 N -0.595 5.595 4 C 0.532 3.468 5 O -0.385 6.385 6 C -0.266 4.266 7 C 0.219 3.781 8 N -0.521 5.521 9 C 0.062 3.938 10 C 0.654 3.346 11 O -0.539 6.539 12 N -0.615 5.615 13 C 0.487 3.513 14 O -0.428 6.428 15 C 0.105 3.895 16 C 0.103 3.897 17 N -0.594 5.594 18 C -0.249 4.249 19 H 0.070 0.930 20 C -0.021 4.021 21 N -0.945 5.945 22 Si 1.061 2.939 23 H -0.298 1.298 24 H -0.287 1.287 25 H -0.303 1.303 26 C 0.096 3.904 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.185 0.815 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.416 0.584 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.255 0.745 41 H 0.048 0.952 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 -19.797 2.682 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.332 5.332 4 C 0.313 3.687 5 O -0.248 6.248 6 C -0.278 4.278 7 C 0.081 3.919 8 N -0.236 5.236 9 C -0.080 4.080 10 C 0.356 3.644 11 O -0.414 6.414 12 N -0.373 5.373 13 C 0.286 3.714 14 O -0.220 6.220 15 C 0.000 4.000 16 C -0.026 4.026 17 N -0.321 5.321 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.219 4.219 21 N -0.590 5.590 22 Si 0.895 3.105 23 H -0.226 1.226 24 H -0.214 1.214 25 H -0.231 1.231 26 C -0.031 4.031 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.202 0.798 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.272 0.728 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.797 -17.998 1.538 18.971 hybrid contribution 1.291 -1.357 0.201 1.883 sum -4.506 -19.355 1.739 19.948 Atomic orbital electron populations 1.22208 0.96359 1.01502 1.02768 1.21391 0.94257 0.83306 1.02079 1.47432 1.67497 1.13044 1.05251 1.17767 0.81361 0.87686 0.81916 1.91654 1.34081 1.14881 1.84207 1.19957 0.98984 1.05930 1.02973 1.22553 0.96813 0.87501 0.85005 1.46082 1.24310 1.34323 1.18924 1.22240 0.92688 0.89934 1.03186 1.17353 0.78849 0.82840 0.85329 1.90968 1.74204 1.54548 1.21671 1.69634 1.33358 1.17616 1.16675 1.20216 0.84830 0.81148 0.85201 1.85138 1.33647 1.50448 1.52814 1.22701 0.98853 0.93795 0.84660 1.22784 0.94359 0.90107 0.95306 1.45821 1.02105 1.28423 1.55747 1.19661 0.95186 0.96781 1.25940 0.91218 1.25403 1.04750 0.93747 0.97951 1.70874 1.16935 1.44676 1.26512 0.83767 0.76175 0.74988 0.75545 1.22576 1.21431 1.23132 1.22936 0.90626 0.91285 0.98268 0.91945 0.92732 0.92204 0.91664 0.90599 0.79777 0.90089 0.88263 0.89233 0.72754 0.89022 0.94205 0.94298 0.93479 0.93490 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.11 1.11 5.98 -4.04 -0.02 1.08 16 3 N -0.60 -8.64 2.74 -167.03 -0.46 -9.10 16 4 C 0.53 9.50 6.24 -12.58 -0.08 9.42 16 5 O -0.39 -9.33 10.52 5.26 0.06 -9.27 16 6 C -0.27 -3.95 4.37 -104.70 -0.46 -4.41 16 7 C 0.22 2.44 8.82 -16.15 -0.14 2.30 16 8 N -0.52 -6.07 2.96 -128.87 -0.38 -6.45 16 9 C 0.06 0.46 10.35 59.85 0.62 1.07 16 10 C 0.65 10.46 8.32 -88.50 -0.74 9.73 16 11 O -0.54 -10.03 16.67 5.00 0.08 -9.95 16 12 N -0.61 -10.02 10.38 -16.47 -0.17 -10.19 16 13 C 0.49 7.54 7.83 -15.91 -0.12 7.41 16 14 O -0.43 -6.35 13.08 -16.76 -0.22 -6.56 16 15 C 0.10 1.65 4.90 -67.67 -0.33 1.32 16 16 C 0.10 1.90 8.22 -8.51 -0.07 1.83 16 17 N -0.59 -14.35 1.95 -184.62 -0.36 -14.71 16 18 C -0.25 -7.26 8.57 -15.06 -0.13 -7.39 16 19 H 0.07 2.19 8.06 -52.49 -0.42 1.76 16 20 C -0.02 -0.65 5.30 -17.43 -0.09 -0.75 16 21 N -0.95 -31.27 13.70 55.49 0.76 -30.51 16 22 Si 1.06 28.26 25.53 -169.99 -4.34 23.92 16 23 H -0.30 -7.82 6.96 56.52 0.39 -7.43 16 24 H -0.29 -6.99 5.70 56.52 0.32 -6.66 16 25 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 26 C 0.10 2.00 4.56 -8.37 -0.04 1.96 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.61 8.05 -51.93 -0.42 0.19 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.56 5.80 -51.93 -0.30 0.26 16 31 H 0.08 0.59 8.10 -51.93 -0.42 0.16 16 32 H 0.19 1.38 8.05 -52.48 -0.42 0.96 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.86 7.36 -51.93 -0.38 0.48 16 35 H 0.09 0.41 8.02 -51.93 -0.42 -0.01 16 36 H 0.42 4.11 8.98 45.56 0.41 4.51 16 37 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 8.40 8.73 -40.82 -0.36 8.05 16 41 H 0.05 0.95 7.01 -51.93 -0.36 0.59 16 42 H 0.06 1.28 5.67 -51.93 -0.29 0.99 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -41.89 343.65 -5.88 -47.77 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.81 Total: -2.50 kcal Atomic # 6 Polarization: 23.60 SS G_CDS: -1.23 Total: 22.37 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -0.61 Total: -70.95 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.08 Total: -25.78 kcal Atomic # 14 Polarization: 28.26 SS G_CDS: -4.34 Total: 23.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -41.89 -5.88 -47.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957378263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.007 kcal (2) G-P(sol) polarization free energy of solvation -41.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds