Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47591 * 2 1 4 4 C 1.34770 * 120.00243 * 265.90932 * 3 2 1 5 5 O 1.21619 * 119.99809 * 184.78761 * 4 3 2 6 6 C 1.47306 * 119.99883 * 4.78592 * 4 3 2 7 7 C 1.38322 * 120.73682 * 280.79774 * 6 4 3 8 8 N 1.34949 * 119.02334 * 179.97438 * 7 6 4 9 9 C 1.46498 * 119.70534 * 180.02562 * 8 7 6 10 10 C 1.34453 * 120.58616 * 359.97438 * 8 7 6 11 11 O 1.21912 * 119.19746 * 180.02562 * 10 8 7 12 12 N 1.33320 * 121.59900 * 0.02752 * 10 8 7 13 13 C 1.32217 * 120.93191 * 359.71925 * 12 10 8 14 14 O 1.35016 * 120.33148 * 180.28980 * 13 12 10 15 15 C 1.46510 * 119.99490 * 85.90078 * 3 2 1 16 16 C 1.53499 * 114.19739 * 120.00712 * 15 3 2 17 17 N 1.47063 * 87.98824 * 87.51877 * 16 15 3 18 18 C 1.36930 * 136.05771 * 207.08309 * 17 16 15 19 19 H 1.07998 * 120.00491 * 8.63478 * 18 17 16 20 20 C 1.38814 * 120.00044 * 188.64066 * 18 17 16 21 21 N 1.31620 * 119.99860 * 195.52771 * 20 18 17 22 22 Si 1.86804 * 120.00147 * 15.51978 * 20 18 17 23 23 H 1.48493 * 109.47168 * 270.00769 * 22 20 18 24 24 H 1.48499 * 109.46833 * 30.00481 * 22 20 18 25 25 H 1.48498 * 109.47037 * 150.00445 * 22 20 18 26 26 C 1.47066 * 87.88513 * 27.33823 * 17 16 15 27 27 H 1.09002 * 109.47243 * 300.00309 * 1 2 3 28 28 H 1.09003 * 109.47177 * 59.99246 * 1 2 3 29 29 H 1.08993 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47004 * 240.00425 * 2 1 3 31 31 H 1.09003 * 109.47177 * 120.00754 * 2 1 3 32 32 H 1.08007 * 120.48906 * 359.95470 * 7 6 4 33 33 H 1.09001 * 109.47257 * 89.99760 * 9 8 7 34 34 H 1.09003 * 109.46983 * 209.99892 * 9 8 7 35 35 H 1.09004 * 109.47283 * 329.99436 * 9 8 7 36 36 H 0.96696 * 114.00384 * 5.25094 * 14 13 12 37 37 H 1.08994 * 113.28276 * 346.93970 * 15 3 2 38 38 H 1.08996 * 113.47273 * 332.73432 * 16 15 3 39 39 H 1.09003 * 113.46164 * 202.30022 * 16 15 3 40 40 H 0.96995 * 120.00360 * 354.92884 * 21 20 18 41 41 H 1.09000 * 113.47113 * 87.43811 * 26 17 16 42 42 H 1.09002 * 113.47162 * 217.87872 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3216 1.9888 -1.1641 5 8 2.8088 3.1031 -1.1596 6 6 2.0629 1.3032 -2.4420 7 6 2.9278 0.3306 -2.9102 8 7 2.6570 -0.2758 -4.0850 9 6 3.5627 -1.3083 -4.5947 10 6 1.5630 0.0586 -4.7913 11 8 1.3426 -0.5057 -5.8493 12 7 0.7133 0.9924 -4.3629 13 6 0.9161 1.6219 -3.2180 14 8 0.0446 2.5614 -2.7928 15 6 2.1771 2.1020 1.2656 16 6 3.6112 2.5717 1.5466 17 7 3.3016 3.7976 0.7956 18 6 4.0123 4.7134 0.0669 19 1 5.0505 4.5293 -0.1667 20 6 3.3985 5.8787 -0.3715 21 7 3.9632 6.6063 -1.3117 22 14 1.7708 6.4140 0.3727 23 1 0.6526 5.8259 -0.4076 24 1 1.6923 5.9461 1.7798 25 1 1.6738 7.8954 0.3375 26 6 1.8936 3.6106 1.1771 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 3.8071 0.0606 -2.3441 33 1 3.2463 -2.2838 -4.2251 34 1 3.5383 -1.3073 -5.6845 35 1 4.5773 -1.1022 -4.2538 36 1 -0.7402 2.6512 -3.3505 37 1 1.6965 1.6044 2.1079 38 1 4.3719 1.9521 1.0717 39 1 3.8106 2.7487 2.6036 40 1 4.8422 6.3692 -1.6463 41 1 1.6402 4.0615 2.1365 42 1 1.1909 3.8761 0.3873 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957378263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = 20.399353 kcal Electronic energy + Delta-G solvation = -29369.458415 eV Core-core repulsion = 25354.000972 eV Total energy + Delta-G solvation = -4015.457444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.06547 -41.47409 -39.94916 -38.53533 -37.80673 -36.48023 -35.80556 -34.22764 -32.46872 -31.13467 -29.30776 -28.60399 -26.76092 -26.25865 -25.45417 -24.22339 -23.92633 -22.04282 -21.00950 -20.03828 -19.41551 -19.22441 -18.35995 -17.87635 -17.46289 -17.08410 -16.72877 -16.27009 -15.87082 -15.81317 -15.62850 -15.51804 -15.18369 -15.00118 -14.89619 -14.59828 -14.42530 -14.27812 -13.59097 -13.40308 -13.10205 -12.98854 -12.73609 -12.63314 -12.50949 -12.24898 -12.20400 -11.90415 -11.82633 -11.35820 -11.33750 -11.26071 -11.06772 -10.72879 -10.24445 -9.70714 -9.35553 -8.65989 -8.28984 -5.04299 -0.53494 0.23918 1.20672 1.40682 1.53893 1.66653 1.79893 2.09966 2.18755 2.47300 2.73354 3.01746 3.24656 3.37833 3.49881 3.53230 3.75150 4.05417 4.08340 4.15771 4.23675 4.40117 4.46274 4.52422 4.57813 4.65662 4.73192 4.79776 4.84615 4.91600 4.94327 5.00013 5.03316 5.09530 5.21993 5.42905 5.48957 5.98992 6.04534 6.22383 6.48835 6.64310 6.86562 6.97456 7.64465 7.70441 8.60795 9.23212 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.005332 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.437734 B = 5250.400283 C = 5768.252203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 N -0.588 5.588 4 C 0.541 3.459 5 O -0.467 6.467 6 C -0.298 4.298 7 C 0.257 3.743 8 N -0.510 5.510 9 C 0.052 3.948 10 C 0.646 3.354 11 O -0.576 6.576 12 N -0.640 5.640 13 C 0.484 3.516 14 O -0.444 6.444 15 C 0.134 3.866 16 C 0.103 3.897 17 N -0.625 5.625 18 C -0.201 4.201 19 H 0.030 0.970 20 C -0.093 4.093 21 N -0.996 5.996 22 Si 1.101 2.899 23 H -0.303 1.303 24 H -0.248 1.248 25 H -0.317 1.317 26 C 0.084 3.916 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.232 0.768 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.430 0.570 37 H 0.152 0.848 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.235 0.765 41 H 0.064 0.936 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -24.011 5.573 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.323 5.323 4 C 0.323 3.677 5 O -0.335 6.335 6 C -0.310 4.310 7 C 0.117 3.883 8 N -0.222 5.222 9 C -0.088 4.088 10 C 0.348 3.652 11 O -0.454 6.454 12 N -0.400 5.400 13 C 0.285 3.715 14 O -0.239 6.239 15 C 0.029 3.971 16 C -0.024 4.024 17 N -0.352 5.352 18 C -0.329 4.329 19 H 0.048 0.952 20 C -0.282 4.282 21 N -0.647 5.647 22 Si 0.932 3.068 23 H -0.231 1.231 24 H -0.173 1.173 25 H -0.247 1.247 26 C -0.042 4.042 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.249 0.751 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.146 0.854 36 H 0.290 0.710 37 H 0.170 0.830 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.162 -22.348 4.514 23.618 hybrid contribution 1.440 -0.335 -0.687 1.630 sum -4.723 -22.683 3.827 23.483 Atomic orbital electron populations 1.22177 0.96066 1.02723 1.01587 1.21762 0.94397 0.80452 1.04602 1.47573 1.66028 1.14759 1.03973 1.18022 0.79690 0.86620 0.83337 1.91595 1.38059 1.18205 1.85654 1.19786 1.00367 1.08243 1.02629 1.23128 0.96184 0.84945 0.84054 1.46124 1.23457 1.34257 1.18337 1.22663 0.93711 0.89883 1.02499 1.17427 0.79790 0.82687 0.85279 1.90938 1.75393 1.55844 1.23237 1.69511 1.34583 1.18547 1.17348 1.20285 0.85162 0.80984 0.85057 1.85112 1.34581 1.50592 1.53653 1.22543 0.96602 0.91325 0.86616 1.23055 0.96324 0.87242 0.95756 1.45779 1.04126 1.28799 1.56474 1.19344 0.93416 0.96466 1.23685 0.95175 1.26436 1.07713 0.95151 0.98920 1.70993 1.16784 1.46918 1.29959 0.83276 0.72995 0.73648 0.76921 1.23136 1.17276 1.24688 1.23173 0.88012 0.95494 0.97569 0.91826 0.95285 0.89781 0.90307 0.86847 0.75131 0.87321 0.89794 0.85432 0.71037 0.83032 0.94167 0.91585 0.95614 0.91897 0.95592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 71.98 0.74 -1.69 16 2 C 0.11 1.53 5.98 86.38 0.52 2.04 16 3 N -0.59 -14.76 2.74 -800.61 -2.20 -16.96 16 4 C 0.54 18.48 6.24 86.63 0.54 19.02 16 5 O -0.47 -22.84 10.52 -4.09 -0.04 -22.88 16 6 C -0.30 -8.42 4.37 -19.92 -0.09 -8.50 16 7 C 0.26 4.86 8.82 84.23 0.74 5.60 16 8 N -0.51 -10.50 2.96 -679.94 -2.01 -12.51 16 9 C 0.05 0.58 10.35 127.77 1.32 1.90 16 10 C 0.65 20.24 8.32 179.61 1.49 21.73 16 11 O -0.58 -21.47 16.67 -5.03 -0.08 -21.55 16 12 N -0.64 -21.04 10.38 -438.20 -4.55 -25.59 16 13 C 0.48 15.03 7.83 85.59 0.67 15.70 16 14 O -0.44 -13.65 13.08 -82.88 -1.08 -14.73 16 15 C 0.13 3.57 4.90 45.55 0.22 3.79 16 16 C 0.10 3.41 8.22 83.18 0.68 4.09 16 17 N -0.62 -29.45 1.95 -738.03 -1.44 -30.89 16 18 C -0.20 -12.01 8.57 84.04 0.72 -11.29 16 19 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 20 C -0.09 -5.97 5.30 84.86 0.45 -5.52 16 21 N -1.00 -69.89 13.70 21.65 0.30 -69.59 16 22 Si 1.10 58.95 25.53 68.60 1.75 60.70 16 23 H -0.30 -16.16 6.96 99.48 0.69 -15.47 16 24 H -0.25 -11.42 5.70 99.48 0.57 -10.85 16 25 H -0.32 -17.46 7.11 99.48 0.71 -16.75 16 26 C 0.08 3.27 4.56 83.26 0.38 3.65 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.03 0.57 8.05 -2.39 -0.02 0.56 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.92 5.80 -2.39 -0.01 0.91 16 31 H 0.11 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.23 2.14 8.05 -2.91 -0.02 2.12 16 33 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 1.28 7.36 -2.39 -0.02 1.27 16 35 H 0.13 0.49 8.02 -2.39 -0.02 0.47 16 36 H 0.43 9.12 8.98 -74.06 -0.67 8.46 16 37 H 0.15 2.42 8.10 -2.39 -0.02 2.40 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.23 16.64 8.73 -92.71 -0.81 15.84 16 41 H 0.06 2.28 7.01 -2.39 -0.02 2.26 16 42 H 0.03 1.18 5.67 -2.39 -0.01 1.17 16 Total: -1.00 -101.93 343.65 -0.76 -102.69 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 0.21 Total: 0.80 kcal Atomic # 6 Polarization: 42.13 SS G_CDS: 8.39 Total: 50.53 kcal Atomic # 7 Polarization: -145.65 SS G_CDS: -9.90 Total: -155.55 kcal Atomic # 8 Polarization: -57.95 SS G_CDS: -1.21 Total: -59.16 kcal Atomic # 14 Polarization: 58.95 SS G_CDS: 1.75 Total: 60.70 kcal Total: -101.93 -0.76 -102.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957378263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.089 kcal (2) G-P(sol) polarization free energy of solvation -101.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds