Wall clock time and date at job start Fri Apr 10 2020 18:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.89035 * 2 1 4 4 N 1.30441 * 121.81914 * 179.97438 * 3 2 1 5 5 C 1.34320 * 121.47631 * 0.02562 * 4 3 2 6 6 C 1.48561 * 120.20759 * 179.97438 * 5 4 3 7 7 O 1.21464 * 120.00136 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00051 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99697 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46719 * 180.02562 * 9 8 6 11 11 H 1.08995 * 110.64028 * 303.31454 * 10 9 8 12 12 C 1.54324 * 110.71890 * 66.45585 * 10 9 8 13 13 N 1.47020 * 107.39983 * 140.47837 * 12 10 9 14 14 C 1.36946 * 125.64749 * 181.10549 * 13 12 10 15 15 H 1.08000 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99867 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99930 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99829 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47348 * 59.99174 * 18 16 14 20 20 H 1.48492 * 109.47116 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46964 * 299.99484 * 18 16 14 22 22 C 1.47743 * 108.53125 * 1.18235 * 13 12 10 23 23 C 1.54909 * 104.83995 * 335.74644 * 22 13 12 24 24 H 1.09001 * 111.03628 * 155.18095 * 23 22 13 25 25 O 1.42891 * 111.00999 * 279.02161 * 23 22 13 26 26 C 1.37926 * 119.58150 * 0.25868 * 5 4 3 27 27 C 1.34983 * 119.88954 * 180.02562 * 2 1 3 28 28 O 1.21900 * 120.71769 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47083 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47361 * 119.99310 * 1 2 3 31 31 H 1.08998 * 109.47264 * 240.00046 * 1 2 3 32 32 H 1.07997 * 119.09221 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99671 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47222 * 60.01303 * 9 8 6 35 35 H 1.08997 * 109.47438 * 300.00126 * 9 8 6 36 36 H 1.09002 * 109.88322 * 259.97367 * 12 10 9 37 37 H 1.09000 * 109.88025 * 20.98532 * 12 10 9 38 38 H 0.96998 * 119.99524 * 180.02562 * 17 16 14 39 39 H 1.09003 * 110.29227 * 216.94505 * 22 13 12 40 40 H 1.08996 * 110.53057 * 94.67717 * 22 13 12 41 41 H 0.96705 * 114.00245 * 292.19608 * 25 23 22 42 42 H 1.08004 * 120.82849 * 179.74341 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1366 1.1685 0.0000 4 7 3.4403 1.2124 0.0005 5 6 4.1798 0.0911 0.0005 6 6 5.6631 0.1739 0.0005 7 8 6.3282 -0.8424 0.0001 8 7 6.2709 1.3769 0.0010 9 6 7.7336 1.4586 0.0016 10 6 8.1623 2.9273 0.0027 11 1 7.7325 3.4537 -0.8495 12 6 7.7614 3.6121 1.3263 13 7 8.8633 4.5067 1.7099 14 6 8.9063 5.2815 2.8382 15 1 8.0815 5.2666 3.5353 16 6 10.0096 6.0869 3.0854 17 7 11.0145 6.1054 2.2356 18 14 10.0680 7.1444 4.6242 19 1 9.9814 6.2756 5.8255 20 1 11.3432 7.9045 4.6543 21 1 8.9256 8.0933 4.6163 22 6 9.9132 4.4297 0.6733 23 6 9.7093 3.0476 0.0039 24 1 10.1022 3.0435 -1.0128 25 8 10.3032 2.0080 0.7839 26 6 3.5534 -1.1377 -0.0054 27 6 2.1377 -1.1703 -0.0005 28 8 1.5394 -2.2324 -0.0015 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 -0.3634 -0.5138 0.8900 32 1 1.5801 2.0940 0.0004 33 1 5.7397 2.1886 0.0017 34 1 8.1253 0.9662 -0.8884 35 1 8.1247 0.9656 0.8915 36 1 6.8479 4.1894 1.1832 37 1 7.6073 2.8606 2.1006 38 1 11.7855 6.6679 2.4086 39 1 10.9009 4.4876 1.1306 40 1 9.7873 5.2278 -0.0583 41 1 11.2692 2.0420 0.8142 42 1 4.1282 -2.0520 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958148885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:16 Heat of formation + Delta-G solvation = -37.592116 kcal Electronic energy + Delta-G solvation = -26794.766798 eV Core-core repulsion = 22776.794656 eV Total energy + Delta-G solvation = -4017.972142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.16092 -39.76160 -38.29477 -37.88196 -35.63966 -34.96310 -34.51914 -32.17524 -31.40539 -29.90435 -28.64149 -27.68009 -25.80330 -24.99876 -24.60481 -23.19584 -21.06178 -20.25399 -19.69665 -18.91171 -18.09858 -17.47347 -17.29882 -16.86518 -16.43719 -16.02354 -15.67544 -15.25688 -14.87594 -14.79683 -14.27634 -14.19985 -13.80591 -13.75310 -13.59649 -13.42629 -13.30501 -13.03727 -12.67426 -12.33233 -11.95188 -11.38425 -11.23809 -10.95632 -10.84215 -10.79088 -10.67428 -10.63301 -10.37039 -10.29525 -10.06390 -9.85004 -9.80102 -9.11271 -9.02408 -8.87752 -8.68104 -6.84047 -5.69077 -3.08622 -0.06615 1.25621 1.94718 2.56234 2.95672 3.39358 3.41888 3.43682 3.44736 3.52427 4.03327 4.11094 4.45168 4.48394 4.68788 4.73539 4.81265 4.98385 5.07219 5.14613 5.31172 5.31946 5.40695 5.51635 5.60414 5.78821 5.90272 6.03408 6.06657 6.11649 6.33078 6.42210 6.47248 6.64606 6.86447 7.14780 7.27710 7.33106 7.54697 7.57079 7.74968 8.10936 8.23489 8.37289 9.18268 9.80030 10.44505 11.36232 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.002645 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.305606 B =10582.456196 C =11619.232130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.525 5.525 3 C 0.374 3.626 4 N -0.524 5.524 5 C 0.133 3.867 6 C 0.564 3.436 7 O -0.525 6.525 8 N -0.700 5.700 9 C 0.137 3.863 10 C -0.106 4.106 11 H 0.087 0.913 12 C 0.144 3.856 13 N -0.598 5.598 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.926 5.926 18 Si 0.915 3.085 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.126 3.874 23 C 0.082 3.918 24 H 0.055 0.945 25 O -0.557 6.557 26 C -0.214 4.214 27 C 0.518 3.482 28 O -0.527 6.527 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.212 0.788 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.020 0.980 37 H 0.028 0.972 38 H 0.252 0.748 39 H 0.111 0.889 40 H 0.020 0.980 41 H 0.375 0.625 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.883 -7.557 -8.377 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.244 5.244 3 C 0.090 3.910 4 N -0.247 5.247 5 C 0.012 3.988 6 C 0.347 3.653 7 O -0.401 6.401 8 N -0.351 5.351 9 C 0.014 3.986 10 C -0.125 4.125 11 H 0.105 0.895 12 C 0.018 3.982 13 N -0.323 5.323 14 C -0.346 4.346 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.576 5.576 18 Si 0.746 3.254 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.001 3.999 23 C 0.022 3.978 24 H 0.073 0.927 25 O -0.363 6.363 26 C -0.241 4.241 27 C 0.316 3.684 28 O -0.404 6.404 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.228 0.772 33 H 0.248 0.752 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.129 0.871 40 H 0.038 0.962 41 H 0.222 0.778 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.696 -8.353 -8.175 21.207 hybrid contribution -0.124 0.626 0.671 0.926 sum -17.820 -7.727 -7.504 20.822 Atomic orbital electron populations 1.22231 0.76102 1.04712 1.05069 1.46733 1.10896 1.08241 1.58494 1.25009 0.89074 0.89885 0.87068 1.68302 1.04178 1.29738 1.22502 1.21509 0.94898 0.89042 0.93354 1.17779 0.85196 0.84335 0.77969 1.90812 1.64533 1.35018 1.49754 1.45984 1.08737 1.08137 1.72205 1.21365 0.77288 0.96781 1.03189 1.22509 0.95824 0.94328 0.99864 0.89478 1.21304 0.91761 0.92528 0.92579 1.44399 1.16101 1.48834 1.22998 1.19038 1.02258 1.16242 0.97074 0.90520 1.24756 0.96732 1.00375 0.98878 1.69732 1.08366 1.43161 1.36291 0.86133 0.76811 0.79975 0.82473 1.21165 1.21597 1.21245 1.22627 0.97412 0.89651 0.90237 1.23191 0.91189 0.90447 0.92996 0.92718 1.86389 1.24505 1.51101 1.74299 1.23467 0.92820 1.00653 1.07116 1.17301 0.88681 0.83211 0.79209 1.90960 1.70382 1.28174 1.50886 0.88501 0.89605 0.89584 0.77218 0.75226 0.91415 0.89728 0.96172 0.95420 0.93705 0.87110 0.96244 0.77781 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 10.13 59.85 0.61 0.81 16 2 N -0.53 -3.68 2.97 -128.43 -0.38 -4.06 16 3 C 0.37 2.14 11.48 -90.67 -1.04 1.10 16 4 N -0.52 -4.93 9.64 -10.82 -0.10 -5.03 16 5 C 0.13 1.61 6.77 -82.63 -0.56 1.05 16 6 C 0.56 8.27 7.83 -12.00 -0.09 8.17 16 7 O -0.53 -9.31 16.37 5.40 0.09 -9.22 16 8 N -0.70 -9.68 5.39 -61.02 -0.33 -10.01 16 9 C 0.14 2.13 4.59 -4.04 -0.02 2.11 16 10 C -0.11 -1.76 2.95 -88.78 -0.26 -2.02 16 11 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 12 C 0.14 2.93 6.52 -3.06 -0.02 2.91 16 13 N -0.60 -14.98 3.41 -169.81 -0.58 -15.56 16 14 C -0.22 -6.01 10.28 -15.05 -0.15 -6.16 16 15 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 16 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 17 N -0.93 -26.38 10.11 55.49 0.56 -25.82 16 18 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.13 2.91 5.65 -2.35 -0.01 2.89 16 23 C 0.08 1.49 4.17 -24.58 -0.10 1.38 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 O -0.56 -10.16 12.22 -35.23 -0.43 -10.59 16 26 C -0.21 -2.61 9.67 -38.41 -0.37 -2.98 16 27 C 0.52 5.90 7.47 -14.88 -0.11 5.79 16 28 O -0.53 -7.59 17.17 5.01 0.09 -7.50 16 29 H 0.10 -0.06 7.71 -51.93 -0.40 -0.46 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.21 0.10 7.79 -52.49 -0.41 -0.31 16 33 H 0.41 5.08 7.69 -40.82 -0.31 4.76 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.54 7.44 -51.93 -0.39 1.16 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.03 0.60 7.76 -51.93 -0.40 0.19 16 38 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 39 H 0.11 2.87 5.89 -51.93 -0.31 2.57 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.38 5.57 9.12 45.56 0.42 5.99 16 42 H 0.17 2.17 7.68 -52.48 -0.40 1.77 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -36.83 355.32 -7.70 -44.54 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.71 Total: 6.44 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: -2.24 Total: 14.61 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.83 Total: -60.48 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.26 Total: -27.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.83 -7.70 -44.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958148885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.946 kcal (2) G-P(sol) polarization free energy of solvation -36.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds