Wall clock time and date at job start Fri Apr 10 2020 18:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 119.89035 * 2 1 4 4 N 1.30441 * 121.81914 * 179.97438 * 3 2 1 5 5 C 1.34320 * 121.47631 * 0.02562 * 4 3 2 6 6 C 1.48561 * 120.20759 * 179.97438 * 5 4 3 7 7 O 1.21464 * 120.00136 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00051 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99697 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46719 * 180.02562 * 9 8 6 11 11 H 1.08995 * 110.64028 * 303.31454 * 10 9 8 12 12 C 1.54324 * 110.71890 * 66.45585 * 10 9 8 13 13 N 1.47020 * 107.39983 * 140.47837 * 12 10 9 14 14 C 1.36946 * 125.64749 * 181.10549 * 13 12 10 15 15 H 1.08000 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99867 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99930 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99829 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47348 * 59.99174 * 18 16 14 20 20 H 1.48492 * 109.47116 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46964 * 299.99484 * 18 16 14 22 22 C 1.47743 * 108.53125 * 1.18235 * 13 12 10 23 23 C 1.54909 * 104.83995 * 335.74644 * 22 13 12 24 24 H 1.09001 * 111.03628 * 155.18095 * 23 22 13 25 25 O 1.42891 * 111.00999 * 279.02161 * 23 22 13 26 26 C 1.37926 * 119.58150 * 0.25868 * 5 4 3 27 27 C 1.34983 * 119.88954 * 180.02562 * 2 1 3 28 28 O 1.21900 * 120.71769 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47083 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47361 * 119.99310 * 1 2 3 31 31 H 1.08998 * 109.47264 * 240.00046 * 1 2 3 32 32 H 1.07997 * 119.09221 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99671 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47222 * 60.01303 * 9 8 6 35 35 H 1.08997 * 109.47438 * 300.00126 * 9 8 6 36 36 H 1.09002 * 109.88322 * 259.97367 * 12 10 9 37 37 H 1.09000 * 109.88025 * 20.98532 * 12 10 9 38 38 H 0.96998 * 119.99524 * 180.02562 * 17 16 14 39 39 H 1.09003 * 110.29227 * 216.94505 * 22 13 12 40 40 H 1.08996 * 110.53057 * 94.67717 * 22 13 12 41 41 H 0.96705 * 114.00245 * 292.19608 * 25 23 22 42 42 H 1.08004 * 120.82849 * 179.74341 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1366 1.1685 0.0000 4 7 3.4403 1.2124 0.0005 5 6 4.1798 0.0911 0.0005 6 6 5.6631 0.1739 0.0005 7 8 6.3282 -0.8424 0.0001 8 7 6.2709 1.3769 0.0010 9 6 7.7336 1.4586 0.0016 10 6 8.1623 2.9273 0.0027 11 1 7.7325 3.4537 -0.8495 12 6 7.7614 3.6121 1.3263 13 7 8.8633 4.5067 1.7099 14 6 8.9063 5.2815 2.8382 15 1 8.0815 5.2666 3.5353 16 6 10.0096 6.0869 3.0854 17 7 11.0145 6.1054 2.2356 18 14 10.0680 7.1444 4.6242 19 1 9.9814 6.2756 5.8255 20 1 11.3432 7.9045 4.6543 21 1 8.9256 8.0933 4.6163 22 6 9.9132 4.4297 0.6733 23 6 9.7093 3.0476 0.0039 24 1 10.1022 3.0435 -1.0128 25 8 10.3032 2.0080 0.7839 26 6 3.5534 -1.1377 -0.0054 27 6 2.1377 -1.1703 -0.0005 28 8 1.5394 -2.2324 -0.0015 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 -0.3634 -0.5138 0.8900 32 1 1.5801 2.0940 0.0004 33 1 5.7397 2.1886 0.0017 34 1 8.1253 0.9662 -0.8884 35 1 8.1247 0.9656 0.8915 36 1 6.8479 4.1894 1.1832 37 1 7.6073 2.8606 2.1006 38 1 11.7855 6.6679 2.4086 39 1 10.9009 4.4876 1.1306 40 1 9.7873 5.2278 -0.0583 41 1 11.2692 2.0420 0.8142 42 1 4.1282 -2.0520 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958148885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:15 Heat of formation + Delta-G solvation = -67.393760 kcal Electronic energy + Delta-G solvation = -26796.059095 eV Core-core repulsion = 22776.794656 eV Total energy + Delta-G solvation = -4019.264439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.90503 -40.95029 -39.77574 -38.78312 -36.34924 -36.32181 -36.16346 -33.94523 -32.22705 -31.50052 -29.66912 -28.97522 -27.29795 -25.99872 -25.56511 -24.53160 -22.40275 -21.72576 -21.11989 -19.81732 -19.09624 -19.00947 -18.17945 -17.91036 -17.55355 -17.06087 -16.78366 -16.76637 -16.45356 -15.83306 -15.62430 -15.52754 -15.27521 -14.75829 -14.48153 -14.40403 -14.38880 -13.99823 -13.82289 -13.62284 -13.44945 -13.14017 -13.00180 -12.60313 -12.35150 -12.04928 -11.95675 -11.82199 -11.80200 -11.60960 -11.50259 -11.42780 -11.03796 -10.77581 -10.63151 -10.19364 -9.76908 -8.82346 -7.76265 -5.17833 -0.88487 0.51325 1.36452 1.47983 1.50791 1.54817 1.56809 1.86918 2.51325 2.54357 2.81975 3.27113 3.31748 3.40004 3.63200 3.64554 3.89567 3.93255 3.99729 4.03362 4.09191 4.39447 4.43953 4.46487 4.51100 4.62923 4.66586 4.82623 4.86198 4.93575 5.04520 5.17115 5.27185 5.37361 5.38788 5.42972 5.53788 5.80376 6.27307 6.31897 6.53350 6.61153 6.97468 7.01561 7.13681 7.80832 8.44214 9.26169 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018671 B = 0.002645 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.305606 B =10582.456196 C =11619.232130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.516 5.516 3 C 0.399 3.601 4 N -0.543 5.543 5 C 0.146 3.854 6 C 0.561 3.439 7 O -0.563 6.563 8 N -0.689 5.689 9 C 0.150 3.850 10 C -0.090 4.090 11 H 0.117 0.883 12 C 0.142 3.858 13 N -0.621 5.621 14 C -0.236 4.236 15 H 0.077 0.923 16 C -0.066 4.066 17 N -0.948 5.948 18 Si 0.977 3.023 19 H -0.282 1.282 20 H -0.293 1.293 21 H -0.276 1.276 22 C 0.126 3.874 23 C 0.093 3.907 24 H 0.091 0.909 25 O -0.570 6.570 26 C -0.242 4.242 27 C 0.515 3.485 28 O -0.568 6.568 29 H 0.150 0.850 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.276 0.724 33 H 0.421 0.579 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.012 0.988 38 H 0.247 0.753 39 H 0.078 0.922 40 H 0.004 0.996 41 H 0.388 0.612 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.324 -5.980 -9.045 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.231 5.231 3 C 0.117 3.883 4 N -0.268 5.268 5 C 0.023 3.977 6 C 0.346 3.654 7 O -0.442 6.442 8 N -0.340 5.340 9 C 0.027 3.973 10 C -0.109 4.109 11 H 0.135 0.865 12 C 0.017 3.983 13 N -0.347 5.347 14 C -0.365 4.365 15 H 0.095 0.905 16 C -0.258 4.258 17 N -0.598 5.598 18 Si 0.806 3.194 19 H -0.208 1.208 20 H -0.219 1.219 21 H -0.202 1.202 22 C 0.001 3.999 23 C 0.032 3.968 24 H 0.109 0.891 25 O -0.378 6.378 26 C -0.269 4.269 27 C 0.314 3.686 28 O -0.449 6.449 29 H 0.168 0.832 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.291 0.709 33 H 0.259 0.741 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.030 0.970 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.022 0.978 41 H 0.237 0.763 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -20.204 -6.741 -8.853 23.065 hybrid contribution 0.564 0.197 0.896 1.076 sum -19.640 -6.544 -7.957 22.178 Atomic orbital electron populations 1.22618 0.73278 1.08117 1.04677 1.46811 1.12626 1.07256 1.56443 1.26257 0.88122 0.91018 0.82934 1.68323 1.05917 1.28159 1.24353 1.21126 0.93601 0.89837 0.93138 1.18168 0.86408 0.83814 0.77048 1.90789 1.65774 1.36238 1.51354 1.45837 1.08068 1.08438 1.71686 1.21075 0.78268 0.95698 1.02290 1.22457 0.94900 0.94726 0.98857 0.86490 1.21426 0.91135 0.91747 0.93973 1.44705 1.18011 1.49104 1.22835 1.19383 1.02332 1.16620 0.98134 0.90504 1.25546 0.96632 1.01911 1.01722 1.69978 1.08580 1.43639 1.37631 0.85166 0.76674 0.78400 0.79174 1.20847 1.21940 1.20249 1.22494 0.95484 0.92320 0.89599 1.23108 0.92355 0.87382 0.93914 0.89104 1.86377 1.25920 1.50779 1.74675 1.23309 0.93695 1.00208 1.09700 1.17195 0.88381 0.84052 0.79010 1.90927 1.70987 1.29923 1.53057 0.83174 0.89916 0.90157 0.70887 0.74055 0.90419 0.92605 0.94724 0.97026 0.94352 0.90390 0.97815 0.76283 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.16 10.13 127.77 1.29 1.45 16 2 N -0.52 -5.75 2.97 -678.26 -2.01 -7.76 16 3 C 0.40 2.78 11.48 180.36 2.07 4.85 16 4 N -0.54 -8.65 9.64 -188.16 -1.81 -10.46 16 5 C 0.15 3.42 6.77 41.45 0.28 3.70 16 6 C 0.56 16.33 7.83 87.00 0.68 17.01 16 7 O -0.56 -20.49 16.37 -3.60 -0.06 -20.55 16 8 N -0.69 -18.11 5.39 -465.27 -2.51 -20.62 16 9 C 0.15 4.49 4.59 86.38 0.40 4.88 16 10 C -0.09 -2.82 2.95 -9.60 -0.03 -2.85 16 11 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 12 C 0.14 5.64 6.52 86.73 0.57 6.21 16 13 N -0.62 -31.14 3.41 -691.17 -2.35 -33.49 16 14 C -0.24 -13.08 10.28 84.03 0.86 -12.21 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -3.67 5.49 84.86 0.47 -3.20 16 17 N -0.95 -54.97 10.11 21.65 0.22 -54.75 16 18 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 22 C 0.13 5.84 5.65 86.79 0.49 6.33 16 23 C 0.09 3.21 4.17 31.99 0.13 3.35 16 24 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 25 O -0.57 -20.38 12.22 -148.98 -1.82 -22.20 16 26 C -0.24 -6.08 9.67 23.03 0.22 -5.86 16 27 C 0.51 11.60 7.47 85.04 0.64 12.24 16 28 O -0.57 -16.83 17.17 -4.99 -0.09 -16.91 16 29 H 0.15 -1.15 7.71 -2.39 -0.02 -1.17 16 30 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.28 -1.78 7.79 -2.91 -0.02 -1.81 16 33 H 0.42 9.39 7.69 -92.71 -0.71 8.68 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 2.03 7.44 -2.39 -0.02 2.01 16 36 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.01 0.50 7.76 -2.39 -0.02 0.48 16 38 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 39 H 0.08 4.14 5.89 -2.39 -0.01 4.13 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.39 11.36 9.12 -74.05 -0.68 10.68 16 42 H 0.15 4.23 7.68 -2.91 -0.02 4.21 16 Total: -1.00 -85.11 355.32 -0.65 -85.76 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.31 Total: 17.94 kcal Atomic # 6 Polarization: 27.83 SS G_CDS: 8.07 Total: 35.90 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -8.47 Total: -127.09 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -1.96 Total: -59.67 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -85.11 -0.65 -85.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958148885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.367 kcal (2) G-P(sol) polarization free energy of solvation -85.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds