Wall clock time and date at job start Fri Apr 10 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34779 * 119.89213 * 2 1 4 4 N 1.30433 * 121.82020 * 180.02562 * 3 2 1 5 5 C 1.34314 * 121.47776 * 359.97438 * 4 3 2 6 6 C 1.48564 * 120.21014 * 179.97438 * 5 4 3 7 7 O 1.21459 * 120.00332 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99702 * 0.02562 * 6 5 4 9 9 C 1.46507 * 120.00091 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47444 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.77455 * 51.75699 * 10 9 8 12 12 C 1.54322 * 110.72057 * 288.52447 * 10 9 8 13 13 N 1.47019 * 107.27000 * 219.44376 * 12 10 9 14 14 C 1.36941 * 125.64983 * 178.98681 * 13 12 10 15 15 H 1.08007 * 119.99895 * 349.93777 * 14 13 12 16 16 C 1.38803 * 120.00097 * 169.94226 * 14 13 12 17 17 N 1.31626 * 120.00222 * 350.41471 * 16 14 13 18 18 Si 1.86804 * 120.00248 * 170.41635 * 16 14 13 19 19 H 1.48501 * 109.46952 * 94.13640 * 18 16 14 20 20 H 1.48489 * 109.47405 * 214.13908 * 18 16 14 21 21 H 1.48501 * 109.46750 * 334.14201 * 18 16 14 22 22 C 1.47425 * 108.70572 * 358.93568 * 13 12 10 23 23 C 1.54912 * 104.82655 * 24.13248 * 22 13 12 24 24 H 1.09008 * 111.03408 * 204.90198 * 23 22 13 25 25 O 1.42894 * 111.00705 * 81.06562 * 23 22 13 26 26 C 1.37926 * 119.58251 * 0.25190 * 5 4 3 27 27 C 1.34983 * 119.89188 * 180.02562 * 2 1 3 28 28 O 1.21907 * 120.71192 * 0.02562 * 27 2 1 29 29 H 1.09006 * 109.46545 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.47061 * 119.99646 * 1 2 3 31 31 H 1.08994 * 109.47211 * 239.99832 * 1 2 3 32 32 H 1.08001 * 119.08854 * 0.02562 * 3 2 1 33 33 H 0.96997 * 119.99979 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47092 * 59.99553 * 9 8 6 35 35 H 1.09005 * 109.46810 * 300.00203 * 9 8 6 36 36 H 1.08999 * 109.88100 * 338.85815 * 12 10 9 37 37 H 1.08996 * 109.88474 * 100.02484 * 12 10 9 38 38 H 0.96997 * 119.99587 * 179.97438 * 17 16 14 39 39 H 1.09001 * 110.36666 * 265.29433 * 22 13 12 40 40 H 1.08997 * 110.36623 * 142.96984 * 22 13 12 41 41 H 0.96704 * 113.99756 * 67.80213 * 25 23 22 42 42 H 1.07998 * 120.83250 * 179.74574 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1368 1.1685 0.0000 4 7 3.4404 1.2124 -0.0005 5 6 4.1798 0.0911 -0.0005 6 6 5.6632 0.1739 -0.0017 7 8 6.3282 -0.8424 -0.0022 8 7 6.2709 1.3769 -0.0022 9 6 7.7337 1.4587 -0.0039 10 6 8.1624 2.9274 -0.0047 11 1 7.6661 3.4755 0.7961 12 6 7.8737 3.5796 -1.3732 13 7 9.0051 4.4664 -1.6815 14 6 9.1443 5.2167 -2.8185 15 1 8.4717 5.0668 -3.6502 16 6 10.1498 6.1700 -2.9022 17 7 10.8470 6.4870 -1.8317 18 14 10.5136 7.0031 -4.5341 19 1 9.7591 8.2794 -4.6173 20 1 11.9688 7.2809 -4.6346 21 1 10.1018 6.1112 -5.6478 22 6 9.9644 4.4150 -0.5632 23 6 9.7041 3.0492 0.1199 24 1 10.0111 3.0700 1.1657 25 8 10.3600 1.9918 -0.5826 26 6 3.5534 -1.1377 -0.0053 27 6 2.1378 -1.1703 -0.0005 28 8 1.5394 -2.2324 -0.0015 29 1 -0.3632 1.0278 0.0005 30 1 -0.3633 -0.5137 -0.8900 31 1 -0.3633 -0.5138 0.8899 32 1 1.5802 2.0940 0.0004 33 1 5.7398 2.1886 -0.0021 34 1 8.1241 0.9660 -0.8944 35 1 8.1261 0.9657 0.8856 36 1 7.7866 2.8097 -2.1398 37 1 6.9521 4.1592 -1.3206 38 1 11.5499 7.1528 -1.8904 39 1 9.7769 5.2305 0.1353 40 1 10.9868 4.4629 -0.9380 41 1 11.3252 2.0261 -0.5331 42 1 4.1282 -2.0520 -0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958148886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:19 Heat of formation + Delta-G solvation = -39.825256 kcal Electronic energy + Delta-G solvation = -26746.558146 eV Core-core repulsion = 22728.489167 eV Total energy + Delta-G solvation = -4018.068979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16715 -39.77121 -38.33269 -37.89226 -35.64613 -34.99028 -34.54920 -32.17854 -31.41283 -29.93361 -28.64597 -27.71015 -25.83032 -24.99966 -24.59442 -23.19051 -21.06484 -20.31160 -19.75366 -18.91245 -18.10397 -17.47660 -17.29862 -16.87105 -16.43232 -16.03408 -15.68702 -15.26907 -14.88924 -14.81342 -14.27742 -14.17842 -13.87739 -13.75349 -13.59697 -13.42479 -13.31000 -13.02740 -12.70232 -12.38332 -11.95300 -11.51242 -11.14080 -10.96668 -10.85056 -10.81075 -10.66416 -10.64275 -10.44868 -10.30158 -10.08050 -9.89044 -9.82371 -9.15629 -9.03704 -8.88856 -8.62884 -6.80924 -5.77878 -3.09052 -0.07324 1.24964 1.94143 2.55382 2.94566 3.38040 3.41087 3.44363 3.46729 3.51717 4.02733 4.10490 4.45182 4.48133 4.68393 4.69548 4.80291 4.97798 5.06534 5.13308 5.29860 5.31147 5.37995 5.47222 5.60388 5.78084 5.87723 6.01797 6.05968 6.09130 6.30761 6.39074 6.46974 6.64949 6.85611 7.14028 7.30913 7.32523 7.44440 7.53642 7.71556 8.09717 8.17783 8.29425 9.16410 9.78679 10.45359 11.35637 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.019350 B = 0.002586 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.647300 B =10826.037097 C =11751.787687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.525 5.525 3 C 0.375 3.625 4 N -0.524 5.524 5 C 0.133 3.867 6 C 0.564 3.436 7 O -0.525 6.525 8 N -0.701 5.701 9 C 0.138 3.862 10 C -0.105 4.105 11 H 0.089 0.911 12 C 0.145 3.855 13 N -0.597 5.597 14 C -0.223 4.223 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.148 3.852 23 C 0.081 3.919 24 H 0.057 0.943 25 O -0.558 6.558 26 C -0.214 4.214 27 C 0.517 3.483 28 O -0.527 6.527 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.212 0.788 33 H 0.412 0.588 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.252 0.748 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.375 0.625 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.974 -8.374 7.799 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.244 5.244 3 C 0.090 3.910 4 N -0.247 5.247 5 C 0.012 3.988 6 C 0.347 3.653 7 O -0.401 6.401 8 N -0.351 5.351 9 C 0.015 3.985 10 C -0.124 4.124 11 H 0.107 0.893 12 C 0.019 3.981 13 N -0.323 5.323 14 C -0.352 4.352 15 H 0.093 0.907 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.023 3.977 23 C 0.020 3.980 24 H 0.075 0.925 25 O -0.363 6.363 26 C -0.240 4.240 27 C 0.316 3.684 28 O -0.404 6.404 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.228 0.772 33 H 0.248 0.752 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.221 0.779 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.784 -9.169 7.573 21.393 hybrid contribution 0.089 0.574 -0.688 0.901 sum -17.695 -8.594 6.885 20.842 Atomic orbital electron populations 1.22233 0.76092 1.04717 1.05073 1.46738 1.10902 1.08242 1.58483 1.25010 0.89073 0.89888 0.87055 1.68296 1.04182 1.29735 1.22513 1.21507 0.94895 0.89044 0.93375 1.17776 0.85196 0.84329 0.77958 1.90812 1.64532 1.35021 1.49730 1.45993 1.08730 1.08147 1.72243 1.21357 0.77246 0.96712 1.03202 1.22495 0.95605 0.94419 0.99926 0.89324 1.21329 0.91543 0.92851 0.92413 1.44314 1.18371 1.50324 1.19273 1.19021 1.13301 1.11838 0.91029 0.90666 1.24789 0.99783 0.98421 0.97496 1.69930 1.25353 1.35135 1.26564 0.86121 0.77385 0.79253 0.83126 1.21655 1.21635 1.20600 1.22062 0.96148 0.90202 0.89307 1.23240 0.90955 0.89834 0.93973 0.92533 1.86406 1.23206 1.49695 1.77000 1.23464 0.92820 1.00655 1.07105 1.17303 0.88683 0.83213 0.79213 1.90962 1.70378 1.28177 1.50882 0.88493 0.89574 0.89609 0.77212 0.75224 0.89872 0.91327 0.95409 0.96041 0.93746 0.94836 0.90824 0.77868 0.81222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 10.13 59.85 0.61 0.80 16 2 N -0.53 -3.63 2.97 -128.43 -0.38 -4.01 16 3 C 0.37 2.10 11.48 -90.67 -1.04 1.05 16 4 N -0.52 -4.85 9.64 -10.82 -0.10 -4.95 16 5 C 0.13 1.59 6.77 -82.63 -0.56 1.03 16 6 C 0.56 8.16 7.83 -12.00 -0.09 8.07 16 7 O -0.52 -9.21 16.37 5.40 0.09 -9.12 16 8 N -0.70 -9.52 5.46 -61.01 -0.33 -9.85 16 9 C 0.14 2.11 4.50 -4.04 -0.02 2.10 16 10 C -0.11 -1.73 2.89 -88.79 -0.26 -1.99 16 11 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 12 C 0.14 2.93 6.75 -3.07 -0.02 2.91 16 13 N -0.60 -14.93 3.39 -170.08 -0.58 -15.50 16 14 C -0.22 -6.18 10.24 -15.06 -0.15 -6.34 16 15 H 0.08 2.04 7.85 -52.48 -0.41 1.62 16 16 C -0.01 -0.24 5.40 -17.43 -0.09 -0.34 16 17 N -0.92 -26.46 10.68 55.49 0.59 -25.86 16 18 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.15 3.40 5.16 -2.53 -0.01 3.38 16 23 C 0.08 1.43 4.16 -24.58 -0.10 1.32 16 24 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 25 O -0.56 -9.86 12.33 -35.23 -0.43 -10.29 16 26 C -0.21 -2.58 9.67 -38.41 -0.37 -2.95 16 27 C 0.52 5.85 7.47 -14.88 -0.11 5.74 16 28 O -0.53 -7.54 17.18 5.00 0.09 -7.46 16 29 H 0.10 -0.07 7.71 -51.93 -0.40 -0.47 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.21 0.08 7.79 -52.49 -0.41 -0.33 16 33 H 0.41 4.97 7.84 -40.82 -0.32 4.65 16 34 H 0.08 1.49 7.52 -51.93 -0.39 1.10 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.03 0.59 7.68 -51.93 -0.40 0.20 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 40 H 0.07 1.88 6.93 -51.93 -0.36 1.52 16 41 H 0.37 5.29 9.12 45.56 0.42 5.71 16 42 H 0.17 2.15 7.68 -52.49 -0.40 1.75 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -37.14 356.70 -7.71 -44.85 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.77 Total: 5.18 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: -2.23 Total: 14.79 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.80 Total: -60.18 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.26 Total: -26.87 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.14 -7.71 -44.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958148886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.024 kcal (2) G-P(sol) polarization free energy of solvation -37.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds