Wall clock time and date at job start Fri Apr 10 2020 18:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34780 * 119.89358 * 2 1 4 4 N 1.30435 * 121.82409 * 179.73185 * 3 2 1 5 5 C 1.34314 * 121.47540 * 0.54255 * 4 3 2 6 6 C 1.48562 * 120.20651 * 179.72399 * 5 4 3 7 7 O 1.21470 * 119.99893 * 179.71781 * 6 5 4 8 8 N 1.34776 * 120.00080 * 359.72065 * 6 5 4 9 9 C 1.46502 * 119.99933 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47216 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.88449 * 57.42439 * 10 9 8 12 12 C 1.54909 * 111.00473 * 293.54822 * 10 9 8 13 13 N 1.47429 * 104.83386 * 204.91177 * 12 10 9 14 14 C 1.36935 * 125.64939 * 204.09328 * 13 12 10 15 15 H 1.07998 * 120.00411 * 6.64363 * 14 13 12 16 16 C 1.38820 * 119.99637 * 186.64933 * 14 13 12 17 17 N 1.31616 * 120.00167 * 7.37467 * 16 14 13 18 18 Si 1.86795 * 119.99594 * 187.37489 * 16 14 13 19 19 H 1.48500 * 109.47142 * 84.98874 * 18 16 14 20 20 H 1.48507 * 109.47095 * 204.98970 * 18 16 14 21 21 H 1.48507 * 109.47311 * 324.98671 * 18 16 14 22 22 C 1.47021 * 108.69986 * 24.35900 * 13 12 10 23 23 C 1.54341 * 107.26762 * 358.58344 * 22 13 12 24 24 H 1.08999 * 110.51515 * 96.44938 * 23 22 13 25 25 O 1.42902 * 111.00225 * 219.60453 * 23 22 13 26 26 C 1.37925 * 119.58626 * 359.44144 * 5 4 3 27 27 C 1.34981 * 119.89603 * 179.97438 * 2 1 3 28 28 O 1.21909 * 120.71114 * 0.02631 * 27 2 1 29 29 H 1.09000 * 109.47168 * 270.02383 * 1 2 3 30 30 H 1.09004 * 109.47293 * 30.02448 * 1 2 3 31 31 H 1.08999 * 109.47319 * 150.02843 * 1 2 3 32 32 H 1.08004 * 119.08751 * 359.97438 * 3 2 1 33 33 H 0.96997 * 120.00259 * 359.97438 * 8 6 5 34 34 H 1.09000 * 109.46949 * 60.00089 * 9 8 6 35 35 H 1.08994 * 109.47179 * 300.00194 * 9 8 6 36 36 H 1.09004 * 110.36663 * 86.07861 * 12 10 9 37 37 H 1.08994 * 110.36964 * 323.75711 * 12 10 9 38 38 H 0.97001 * 119.99943 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.88690 * 118.12828 * 22 13 12 40 40 H 1.09001 * 109.88415 * 239.29600 * 22 13 12 41 41 H 0.96700 * 113.99554 * 293.77900 * 25 23 22 42 42 H 1.07990 * 120.83817 * 180.25707 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1685 0.0000 4 7 3.4403 1.2124 0.0052 5 6 4.1798 0.0912 0.0000 6 6 5.6631 0.1742 -0.0001 7 8 6.3282 -0.8422 0.0003 8 7 6.2708 1.3772 -0.0006 9 6 7.7335 1.4589 -0.0012 10 6 8.1622 2.9276 -0.0023 11 1 7.7451 3.4548 0.8557 12 6 7.7627 3.6217 -1.3283 13 7 8.7095 4.7432 -1.4675 14 6 8.4921 5.8862 -2.1895 15 1 7.5235 6.0706 -2.6302 16 6 9.5169 6.8079 -2.3551 17 7 10.7339 6.5197 -1.9452 18 14 9.1685 8.4572 -3.1598 19 1 8.6677 9.4108 -2.1375 20 1 10.4179 8.9880 -3.7621 21 1 8.1428 8.2841 -4.2198 22 6 9.9282 4.4282 -0.7079 23 6 9.7081 3.0557 -0.0371 24 1 10.1474 2.2610 -0.6401 25 8 10.2466 3.0403 1.2865 26 6 3.5535 -1.1376 0.0005 27 6 2.1377 -1.1702 0.0005 28 8 1.5394 -2.2324 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 1.5801 2.0941 -0.0004 33 1 5.7397 2.1888 -0.0013 34 1 8.1246 0.9660 -0.8913 35 1 8.1253 0.9663 0.8887 36 1 6.7399 3.9940 -1.2684 37 1 7.8674 2.9307 -2.1647 38 1 11.4499 7.1639 -2.0606 39 1 10.7834 4.3806 -1.3821 40 1 10.0967 5.1886 0.0547 41 1 11.2100 3.1176 1.3200 42 1 4.1283 -2.0519 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958148887.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:21 Heat of formation + Delta-G solvation = -71.502812 kcal Electronic energy + Delta-G solvation = -26652.069424 eV Core-core repulsion = 22632.626803 eV Total energy + Delta-G solvation = -4019.442621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.90125 -40.95183 -39.78166 -38.78056 -36.64592 -36.33751 -36.18958 -34.00627 -32.21978 -31.54648 -29.57799 -28.96676 -27.31284 -25.97134 -25.55090 -24.51635 -22.40668 -21.77347 -21.38598 -19.83759 -19.12676 -18.78415 -18.23037 -18.01848 -17.54125 -17.14402 -17.02684 -16.68041 -16.47543 -15.82886 -15.70014 -15.54711 -15.05738 -14.78836 -14.48852 -14.40857 -14.39840 -13.98774 -13.89912 -13.58256 -13.45808 -13.28671 -13.04972 -12.71664 -12.46215 -12.27299 -11.96738 -11.88199 -11.76360 -11.50533 -11.45456 -11.39043 -11.07946 -10.83490 -10.69021 -10.21229 -9.75958 -8.90368 -7.83381 -5.21747 -0.88073 0.51690 1.37180 1.48933 1.51095 1.54903 1.58815 1.84617 2.50464 2.54728 2.81527 3.22998 3.30692 3.35866 3.58130 3.64388 3.73881 3.90970 3.93066 4.09891 4.16861 4.36903 4.40643 4.46403 4.48709 4.52591 4.63285 4.75205 4.84218 4.89345 4.97907 5.17204 5.22731 5.35178 5.38185 5.43059 5.52321 5.71107 6.19182 6.26849 6.54081 6.61097 6.89791 6.97985 7.08558 7.76169 8.39923 9.25397 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.002694 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.862201 B =10392.883839 C =11772.972466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.516 5.516 3 C 0.400 3.600 4 N -0.543 5.543 5 C 0.145 3.855 6 C 0.564 3.436 7 O -0.561 6.561 8 N -0.689 5.689 9 C 0.143 3.857 10 C -0.089 4.089 11 H 0.090 0.910 12 C 0.139 3.861 13 N -0.623 5.623 14 C -0.241 4.241 15 H 0.088 0.912 16 C -0.068 4.068 17 N -0.951 5.951 18 Si 0.979 3.021 19 H -0.285 1.285 20 H -0.298 1.298 21 H -0.266 1.266 22 C 0.156 3.844 23 C 0.098 3.902 24 H 0.075 0.925 25 O -0.569 6.569 26 C -0.240 4.240 27 C 0.514 3.486 28 O -0.569 6.569 29 H 0.097 0.903 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.274 0.726 33 H 0.422 0.578 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.246 0.754 39 H 0.029 0.971 40 H 0.005 0.995 41 H 0.393 0.607 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.985 -8.633 5.488 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.231 5.231 3 C 0.117 3.883 4 N -0.267 5.267 5 C 0.022 3.978 6 C 0.348 3.652 7 O -0.439 6.439 8 N -0.340 5.340 9 C 0.019 3.981 10 C -0.109 4.109 11 H 0.108 0.892 12 C 0.014 3.986 13 N -0.350 5.350 14 C -0.370 4.370 15 H 0.106 0.894 16 C -0.261 4.261 17 N -0.600 5.600 18 Si 0.807 3.193 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.191 1.191 22 C 0.030 3.970 23 C 0.037 3.963 24 H 0.093 0.907 25 O -0.376 6.376 26 C -0.267 4.267 27 C 0.313 3.687 28 O -0.450 6.450 29 H 0.115 0.885 30 H 0.159 0.841 31 H 0.097 0.903 32 H 0.289 0.711 33 H 0.260 0.740 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.023 0.977 41 H 0.243 0.757 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.882 -9.266 5.581 22.634 hybrid contribution 0.624 0.466 -0.619 0.995 sum -19.257 -8.800 4.962 21.747 Atomic orbital electron populations 1.22631 0.73383 1.07103 1.05993 1.46797 1.12619 1.07272 1.56460 1.26166 0.88113 0.91036 0.82986 1.68331 1.05888 1.28239 1.24281 1.21128 0.93664 0.89792 0.93203 1.18116 0.86353 0.83724 0.76982 1.90789 1.65688 1.36116 1.51328 1.45771 1.07866 1.08540 1.71783 1.21258 0.79063 0.95120 1.02678 1.22400 0.94503 0.94716 0.99237 0.89172 1.21773 0.94195 0.88797 0.93810 1.44613 1.15392 1.17612 1.57363 1.19488 0.96864 0.95348 1.25308 0.89383 1.25682 0.95264 1.02698 1.02417 1.70146 1.00517 1.35617 1.53717 0.85089 0.76626 0.79492 0.78094 1.21241 1.22483 1.19088 1.21649 0.89781 0.92400 0.93180 1.22877 0.93472 0.96339 0.83580 0.90731 1.86389 1.27785 1.96589 1.26850 1.23303 0.93618 1.00225 1.09577 1.17226 0.88463 0.84063 0.78934 1.90928 1.70950 1.29903 1.53222 0.88451 0.84109 0.90339 0.71094 0.74023 0.91100 0.90592 0.92094 0.95545 0.94432 0.95296 0.97667 0.75722 0.83098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.14 10.39 127.77 1.33 1.47 16 2 N -0.52 -5.61 2.97 -678.24 -2.01 -7.62 16 3 C 0.40 2.76 11.45 180.37 2.07 4.82 16 4 N -0.54 -8.44 9.64 -188.16 -1.81 -10.25 16 5 C 0.14 3.26 6.77 41.45 0.28 3.54 16 6 C 0.56 15.47 7.83 87.00 0.68 16.15 16 7 O -0.56 -19.11 16.37 -3.62 -0.06 -19.17 16 8 N -0.69 -17.18 5.40 -465.28 -2.51 -19.69 16 9 C 0.14 3.94 5.12 86.38 0.44 4.38 16 10 C -0.09 -2.84 2.83 -9.40 -0.03 -2.87 16 11 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 12 C 0.14 5.18 6.41 86.85 0.56 5.74 16 13 N -0.62 -30.60 3.39 -691.94 -2.35 -32.94 16 14 C -0.24 -12.99 10.26 84.04 0.86 -12.13 16 15 H 0.09 4.45 7.84 -2.91 -0.02 4.43 16 16 C -0.07 -3.75 5.45 84.86 0.46 -3.28 16 17 N -0.95 -56.03 10.48 21.65 0.23 -55.80 16 18 Si 0.98 44.42 29.56 68.60 2.03 46.44 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 C 0.16 7.40 5.21 86.74 0.45 7.86 16 23 C 0.10 3.47 3.78 31.79 0.12 3.59 16 24 H 0.07 2.44 8.04 -2.39 -0.02 2.42 16 25 O -0.57 -18.49 13.40 -148.98 -2.00 -20.49 16 26 C -0.24 -5.80 9.67 23.03 0.22 -5.58 16 27 C 0.51 11.28 7.47 85.04 0.63 11.91 16 28 O -0.57 -16.51 16.77 -5.02 -0.08 -16.59 16 29 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.14 -0.88 8.01 -2.38 -0.02 -0.90 16 31 H 0.08 0.60 7.44 -2.39 -0.02 0.58 16 32 H 0.27 -1.65 8.01 -2.91 -0.02 -1.67 16 33 H 0.42 9.21 7.70 -92.71 -0.71 8.50 16 34 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 38 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.03 1.55 6.99 -2.39 -0.02 1.54 16 40 H 0.01 0.28 7.83 -2.39 -0.02 0.26 16 41 H 0.39 9.83 9.12 -74.06 -0.68 9.16 16 42 H 0.15 4.08 7.68 -2.92 -0.02 4.06 16 Total: -1.00 -83.47 357.59 -0.81 -84.28 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.32 Total: 16.23 kcal Atomic # 6 Polarization: 27.52 SS G_CDS: 8.08 Total: 35.60 kcal Atomic # 7 Polarization: -117.85 SS G_CDS: -8.46 Total: -126.31 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -2.14 Total: -56.25 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -83.47 -0.81 -84.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958148887.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.779 kcal (2) G-P(sol) polarization free energy of solvation -83.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds