Wall clock time and date at job start Fri Apr 10 2020 18:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28386 * 119.10325 * 2 1 4 4 C 1.31400 * 122.26848 * 180.02562 * 3 2 1 5 5 C 1.47886 * 119.89502 * 179.97438 * 4 3 2 6 6 O 1.21552 * 120.00216 * 179.72670 * 5 4 3 7 7 N 1.34777 * 119.99831 * 359.97438 * 5 4 3 8 8 C 1.46506 * 120.00268 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47556 * 180.02562 * 8 7 5 10 10 H 1.09000 * 110.88328 * 302.57244 * 9 8 7 11 11 C 1.54907 * 111.00547 * 66.44982 * 9 8 7 12 12 N 1.47424 * 104.83442 * 155.08873 * 11 9 8 13 13 C 1.36938 * 125.65384 * 155.84029 * 12 11 9 14 14 H 1.08007 * 119.99255 * 359.97438 * 13 12 11 15 15 C 1.38804 * 120.00189 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00370 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99953 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47123 * 60.00364 * 17 15 13 19 19 H 1.48501 * 109.47288 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47274 * 300.00187 * 17 15 13 21 21 C 1.47022 * 108.70077 * 335.86884 * 12 11 9 22 22 C 1.54327 * 107.27166 * 1.06217 * 21 12 11 23 23 H 1.09002 * 110.72033 * 140.54866 * 22 21 12 24 24 O 1.42894 * 110.71896 * 263.83091 * 22 21 12 25 25 C 1.41574 * 120.21510 * 0.25424 * 4 3 2 26 26 C 1.36329 * 118.23481 * 359.49056 * 25 4 3 27 27 C 1.34613 * 119.09867 * 180.02562 * 2 1 3 28 28 O 1.21976 * 120.22869 * 359.96078 * 27 2 1 29 29 H 1.09004 * 109.47144 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47056 * 120.00014 * 1 2 3 31 31 H 1.08998 * 109.47196 * 240.00184 * 1 2 3 32 32 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 33 33 H 1.09004 * 109.46875 * 300.00170 * 8 7 5 34 34 H 1.08992 * 109.47170 * 59.99739 * 8 7 5 35 35 H 1.09004 * 110.37125 * 273.92620 * 11 9 8 36 36 H 1.09007 * 110.36868 * 36.24649 * 11 9 8 37 37 H 0.96999 * 120.00275 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.88057 * 120.47394 * 21 12 11 39 39 H 1.09000 * 109.88798 * 241.48978 * 21 12 11 40 40 H 0.96705 * 114.00098 * 293.51501 * 24 22 21 41 41 H 1.08001 * 120.88357 * 179.74626 * 25 4 3 42 42 H 1.08000 * 121.03365 * 180.21662 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0894 1.1218 0.0000 4 6 3.4014 1.1943 -0.0005 5 6 4.0666 2.5151 -0.0010 6 8 5.2801 2.5845 0.0035 7 7 3.3272 3.6420 -0.0016 8 6 3.9860 4.9505 -0.0027 9 6 2.9271 6.0548 -0.0024 10 1 2.2618 5.9553 -0.8601 11 6 2.1267 6.0563 1.3239 12 7 1.6272 7.4365 1.4617 13 6 0.5277 7.8191 2.1827 14 1 -0.0548 7.0796 2.7122 15 6 0.1618 9.1571 2.2329 16 7 0.8720 10.0583 1.5879 17 14 -1.3385 9.6789 3.2158 18 1 -1.1516 9.3045 4.6406 19 1 -1.5134 11.1497 3.1089 20 1 -2.5436 8.9974 2.6788 21 6 2.5048 8.3340 0.6963 22 6 3.5873 7.4585 0.0306 23 1 3.7992 7.8088 -0.9796 24 8 4.7779 7.4387 0.8207 25 6 4.1803 0.0121 -0.0065 26 6 3.5323 -1.1873 -0.0010 27 6 2.1196 -1.1762 -0.0005 28 8 1.4974 -2.2253 -0.0003 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3633 -0.5138 0.8900 32 1 2.3588 3.5866 -0.0012 33 1 4.6087 5.0445 0.8871 34 1 4.6081 5.0434 -0.8928 35 1 1.2938 5.3555 1.2652 36 1 2.7782 5.8032 2.1604 37 1 0.6161 10.9932 1.6227 38 1 1.9272 8.8542 -0.0678 39 1 2.9700 9.0575 1.3659 40 1 5.2291 8.2924 0.8734 41 1 5.2593 0.0592 -0.0111 42 1 4.0818 -2.1170 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958648751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:41 Heat of formation + Delta-G solvation = -17.635316 kcal Electronic energy + Delta-G solvation = -26967.237140 eV Core-core repulsion = 22950.130389 eV Total energy + Delta-G solvation = -4017.106751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.45489 -39.82857 -38.40027 -37.96433 -35.34351 -34.98709 -34.64188 -32.42665 -31.75260 -29.79742 -28.72134 -27.74086 -25.97584 -25.22326 -24.12447 -23.39916 -21.42006 -20.30240 -19.91056 -18.82535 -18.35480 -17.37212 -17.17483 -17.06402 -16.50835 -16.15822 -15.67344 -15.29232 -14.88312 -14.55685 -14.13305 -14.00437 -13.76308 -13.74667 -13.64917 -13.47058 -13.02448 -12.95013 -12.66254 -12.60642 -12.01629 -11.91388 -11.46549 -11.25581 -10.84890 -10.82636 -10.70871 -10.55760 -10.44840 -10.19776 -10.10662 -9.94445 -9.81231 -9.22556 -9.11983 -8.88106 -8.69246 -6.90346 -5.78076 -3.11213 0.06124 0.79683 1.72570 2.54575 2.93179 3.25046 3.36504 3.41114 3.42058 3.58756 4.25878 4.38971 4.42799 4.51510 4.67967 4.82988 4.83973 5.05362 5.16753 5.19088 5.26456 5.27643 5.36715 5.48403 5.50304 5.55668 5.62336 5.85638 5.97796 6.05244 6.31511 6.34239 6.38226 6.54664 6.85124 7.11124 7.34395 7.36607 7.44557 7.60488 7.70369 8.02503 8.17045 8.19932 9.14716 9.75427 10.40754 11.33883 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.002981 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.933727 B = 9391.846706 C =11002.171460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.336 5.336 3 N -0.180 5.180 4 C 0.021 3.979 5 C 0.585 3.415 6 O -0.529 6.529 7 N -0.704 5.704 8 C 0.138 3.862 9 C -0.110 4.110 10 H 0.090 0.910 11 C 0.144 3.856 12 N -0.603 5.603 13 C -0.228 4.228 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.925 5.925 17 Si 0.913 3.087 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.153 3.847 22 C 0.083 3.917 23 H 0.058 0.942 24 O -0.564 6.564 25 C -0.030 4.030 26 C -0.193 4.193 27 C 0.479 3.521 28 O -0.526 6.526 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.409 0.591 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.026 0.974 37 H 0.253 0.747 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.376 0.624 41 H 0.165 0.835 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 -16.389 -6.404 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.158 5.158 3 N -0.011 5.011 4 C -0.151 4.151 5 C 0.367 3.633 6 O -0.404 6.404 7 N -0.355 5.355 8 C 0.015 3.985 9 C -0.130 4.130 10 H 0.108 0.892 11 C 0.018 3.982 12 N -0.329 5.329 13 C -0.356 4.356 14 H 0.096 0.904 15 C -0.204 4.204 16 N -0.573 5.573 17 Si 0.744 3.256 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.028 3.972 22 C 0.023 3.977 23 H 0.076 0.924 24 O -0.370 6.370 25 C -0.053 4.053 26 C -0.223 4.223 27 C 0.278 3.722 28 O -0.404 6.404 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.244 0.756 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.223 0.777 41 H 0.182 0.818 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.175 -16.840 -6.276 18.450 hybrid contribution -0.627 0.413 0.451 0.875 sum 3.548 -16.428 -5.825 17.787 Atomic orbital electron populations 1.22295 0.73175 1.05823 1.04814 1.46791 1.10036 1.02567 1.56421 1.71111 1.11299 1.12648 1.06001 1.21857 0.88113 0.96502 1.08611 1.17163 0.86365 0.82192 0.77544 1.90832 1.12603 1.86345 1.50577 1.45986 1.11048 1.05799 1.72680 1.21307 0.94952 0.79015 1.03237 1.22689 0.96523 0.93062 1.00728 0.89207 1.21576 0.94894 0.88661 0.93042 1.44357 1.29915 1.00617 1.58012 1.19024 1.01405 0.92205 1.22986 0.90427 1.24787 0.99363 0.95769 1.00522 1.69914 1.40171 1.00946 1.46243 0.86179 0.82293 0.77413 0.79750 1.21153 1.21594 1.21151 1.21864 0.89462 0.91003 0.94913 1.23111 0.85968 0.95359 0.93236 0.92441 1.86393 1.39649 1.36976 1.73955 1.22256 1.03179 0.90255 0.89610 1.22691 0.92621 1.00487 1.06495 1.18115 0.90156 0.83892 0.80073 1.90982 1.69333 1.29373 1.50706 0.87527 0.89186 0.89115 0.75555 0.89686 0.91329 0.94490 0.95648 0.93669 0.92976 0.93167 0.77715 0.81761 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.20 59.85 0.61 1.16 16 2 N -0.34 -3.35 3.62 -70.15 -0.25 -3.60 16 3 N -0.18 -1.85 10.05 33.41 0.34 -1.52 16 4 C 0.02 0.22 6.84 -82.83 -0.57 -0.34 16 5 C 0.59 7.48 7.81 -12.31 -0.10 7.39 16 6 O -0.53 -8.12 16.38 5.32 0.09 -8.03 16 7 N -0.70 -8.80 5.40 -61.24 -0.33 -9.13 16 8 C 0.14 1.96 4.74 -4.04 -0.02 1.94 16 9 C -0.11 -1.75 3.03 -88.48 -0.27 -2.02 16 10 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 11 C 0.14 2.82 6.40 -2.53 -0.02 2.80 16 12 N -0.60 -14.73 3.39 -170.07 -0.58 -15.30 16 13 C -0.23 -6.16 10.28 -15.06 -0.15 -6.32 16 14 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 15 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 16 N -0.93 -26.26 10.31 55.49 0.57 -25.69 16 17 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.15 3.47 5.14 -3.06 -0.02 3.45 16 22 C 0.08 1.43 4.09 -24.90 -0.10 1.33 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 O -0.56 -9.28 12.09 -35.23 -0.43 -9.71 16 25 C -0.03 -0.26 9.67 -39.00 -0.38 -0.64 16 26 C -0.19 -1.71 10.11 -39.12 -0.40 -2.11 16 27 C 0.48 5.35 7.47 -15.18 -0.11 5.23 16 28 O -0.53 -7.24 17.07 4.94 0.08 -7.16 16 29 H 0.11 0.59 8.05 -51.93 -0.42 0.17 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.41 4.63 7.67 -40.82 -0.31 4.31 16 33 H 0.08 1.39 7.42 -51.93 -0.39 1.00 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.53 8.00 -51.92 -0.42 0.12 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 39 H 0.05 1.27 7.43 -51.93 -0.39 0.89 16 40 H 0.38 4.85 9.12 45.56 0.42 5.27 16 41 H 0.16 1.21 7.72 -52.49 -0.41 0.81 16 42 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -34.23 356.29 -6.57 -40.80 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.80 Total: 5.89 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -1.61 Total: 11.54 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.25 Total: -55.24 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.25 Total: -24.89 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.23 -6.57 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958648751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.160 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds