Wall clock time and date at job start Fri Apr 10 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28384 * 119.10639 * 2 1 4 4 C 1.31407 * 122.26964 * 179.97438 * 3 2 1 5 5 C 1.47877 * 119.89208 * 180.02562 * 4 3 2 6 6 O 1.21561 * 119.99907 * 179.97438 * 5 4 3 7 7 N 1.34775 * 120.00308 * 359.97438 * 5 4 3 8 8 C 1.46506 * 119.99914 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46887 * 180.02562 * 8 7 5 10 10 H 1.08999 * 110.88763 * 57.43038 * 9 8 7 11 11 C 1.54912 * 111.00533 * 293.55099 * 9 8 7 12 12 N 1.47427 * 104.83088 * 204.88089 * 11 9 8 13 13 C 1.36936 * 125.64518 * 204.09463 * 12 11 9 14 14 H 1.07999 * 120.00294 * 25.97388 * 13 12 11 15 15 C 1.38813 * 119.99647 * 205.98267 * 13 12 11 16 16 N 1.31617 * 119.99963 * 214.50307 * 15 13 12 17 17 Si 1.86800 * 120.00338 * 34.49854 * 15 13 12 18 18 H 1.48506 * 109.46939 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47389 * 240.00486 * 17 15 13 20 20 H 1.48500 * 109.47406 * 119.99895 * 17 15 13 21 21 C 1.47016 * 108.70356 * 24.35082 * 12 11 9 22 22 C 1.54333 * 107.26692 * 358.58987 * 21 12 11 23 23 H 1.09002 * 110.85082 * 219.66694 * 22 21 12 24 24 O 1.42901 * 110.66886 * 96.51975 * 22 21 12 25 25 C 1.41580 * 120.21133 * 0.26809 * 4 3 2 26 26 C 1.36333 * 118.23513 * 359.46292 * 25 4 3 27 27 C 1.34613 * 119.09843 * 179.97438 * 2 1 3 28 28 O 1.21981 * 120.22600 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.46445 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47164 * 119.99944 * 1 2 3 31 31 H 1.08998 * 109.46977 * 240.00542 * 1 2 3 32 32 H 0.96998 * 119.99662 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47016 * 60.00491 * 8 7 5 34 34 H 1.08992 * 109.47277 * 300.00258 * 8 7 5 35 35 H 1.09000 * 110.36941 * 86.03926 * 11 9 8 36 36 H 1.09007 * 110.45669 * 323.76279 * 11 9 8 37 37 H 0.97001 * 120.00145 * 5.08052 * 16 15 13 38 38 H 1.09008 * 109.88212 * 118.13045 * 21 12 11 39 39 H 1.08996 * 109.88703 * 239.29728 * 21 12 11 40 40 H 0.96707 * 113.99813 * 66.41410 * 24 22 21 41 41 H 1.07993 * 120.87999 * 179.72576 * 25 4 3 42 42 H 1.08000 * 121.02924 * 180.23172 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0895 1.1217 0.0000 4 6 3.4016 1.1942 0.0005 5 6 4.0667 2.5150 0.0010 6 8 5.2803 2.5843 0.0020 7 7 3.3274 3.6418 0.0005 8 6 3.9864 4.9503 0.0005 9 6 2.9274 6.0547 0.0005 10 1 2.2628 5.9558 0.8587 11 6 2.1260 6.0555 -1.3252 12 7 1.6258 7.4355 -1.4629 13 6 0.5263 7.8175 -2.1842 14 1 -0.2759 7.1156 -2.3584 15 6 0.4427 9.1069 -2.6915 16 7 -0.7239 9.7122 -2.7616 17 14 1.9860 9.9830 -3.2747 18 1 3.1601 9.0923 -3.0913 19 1 2.1785 11.2254 -2.4845 20 1 1.8464 10.3274 -4.7125 21 6 2.5066 8.3342 -0.7028 22 6 3.5869 7.4587 -0.0333 23 1 3.7995 7.8093 0.9767 24 8 4.7791 7.4384 -0.8208 25 6 4.1804 0.0119 -0.0047 26 6 3.5323 -1.1875 0.0012 27 6 2.1197 -1.1762 0.0005 28 8 1.4973 -2.2253 0.0015 29 1 -0.3632 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3633 -0.5137 0.8900 32 1 2.3590 3.5865 0.0001 33 1 4.6090 5.0435 -0.8893 34 1 4.6084 5.0439 0.8906 35 1 1.2936 5.3544 -1.2658 36 1 2.7755 5.8020 -2.1632 37 1 -1.5136 9.2876 -2.3916 38 1 2.9740 9.0525 -1.3765 39 1 1.9317 8.8586 0.0605 40 1 5.2299 8.2923 -0.8739 41 1 5.2593 0.0589 -0.0088 42 1 4.0817 -2.1172 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958648752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:44 Heat of formation + Delta-G solvation = -15.613621 kcal Electronic energy + Delta-G solvation = -27058.914870 eV Core-core repulsion = 23041.895786 eV Total energy + Delta-G solvation = -4017.019083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.48680 -39.90954 -38.65004 -38.02052 -35.41633 -35.12729 -34.78723 -32.55568 -31.92005 -30.24716 -28.79513 -27.98816 -26.17393 -25.22536 -24.06759 -23.14360 -21.43014 -20.66276 -19.96859 -18.89660 -18.41220 -17.88366 -17.20786 -17.12200 -16.81966 -16.29095 -15.77834 -15.42593 -15.14865 -14.58735 -14.43832 -14.10219 -13.90786 -13.76169 -13.63819 -13.49571 -13.34137 -13.04502 -12.87622 -12.73244 -12.29961 -12.04496 -11.97843 -11.32823 -11.04113 -10.86759 -10.77544 -10.66699 -10.58072 -10.30979 -10.09781 -9.95278 -9.42199 -9.32063 -9.18949 -8.92958 -8.40080 -7.04465 -6.44104 -3.31300 0.02917 0.76062 1.69424 2.50232 2.86317 3.20763 3.42017 3.51888 3.54881 3.67019 4.22249 4.35569 4.38172 4.48364 4.58561 4.77853 4.80598 4.81817 5.04583 5.10583 5.13803 5.16798 5.17593 5.24516 5.36011 5.45008 5.58293 5.60494 5.72944 5.78774 6.10357 6.12942 6.29078 6.40593 6.51611 6.58937 6.78386 7.07943 7.29799 7.56394 7.81776 7.89522 7.96724 8.31869 8.92874 9.52795 10.26306 10.98571 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.002984 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.307118 B = 9380.216054 C =10554.181330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.336 5.336 3 N -0.179 5.179 4 C 0.020 3.980 5 C 0.586 3.414 6 O -0.528 6.528 7 N -0.705 5.705 8 C 0.138 3.862 9 C -0.110 4.110 10 H 0.093 0.907 11 C 0.136 3.864 12 N -0.598 5.598 13 C -0.343 4.343 14 H 0.069 0.931 15 C 0.002 3.998 16 N -0.899 5.899 17 Si 1.031 2.969 18 H -0.274 1.274 19 H -0.294 1.294 20 H -0.297 1.297 21 C 0.095 3.905 22 C 0.100 3.900 23 H 0.065 0.935 24 O -0.558 6.558 25 C -0.030 4.030 26 C -0.193 4.193 27 C 0.479 3.521 28 O -0.525 6.525 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.409 0.591 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.377 0.623 41 H 0.165 0.835 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.383 -16.152 9.207 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.158 5.158 3 N -0.011 5.011 4 C -0.152 4.152 5 C 0.369 3.631 6 O -0.403 6.403 7 N -0.356 5.356 8 C 0.015 3.985 9 C -0.129 4.129 10 H 0.111 0.889 11 C 0.011 3.989 12 N -0.326 5.326 13 C -0.470 4.470 14 H 0.087 0.913 15 C -0.202 4.202 16 N -0.537 5.537 17 Si 0.861 3.139 18 H -0.200 1.200 19 H -0.221 1.221 20 H -0.225 1.225 21 C -0.030 4.030 22 C 0.040 3.960 23 H 0.083 0.917 24 O -0.364 6.364 25 C -0.053 4.053 26 C -0.222 4.222 27 C 0.278 3.722 28 O -0.403 6.403 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.245 0.755 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.224 0.776 41 H 0.182 0.818 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.359 -15.422 8.367 19.435 hybrid contribution -0.374 -1.282 0.649 1.485 sum 7.985 -16.704 9.016 20.592 Atomic orbital electron populations 1.22300 0.73139 1.05823 1.04857 1.46796 1.10049 1.02558 1.56382 1.71104 1.11290 1.12709 1.05952 1.21828 0.88124 0.96448 1.08752 1.17155 0.86348 0.82187 0.77450 1.90835 1.12585 1.86360 1.50515 1.45948 1.11074 1.05727 1.72855 1.21277 0.94780 0.79075 1.03357 1.22688 0.96572 0.92673 1.01001 0.88915 1.21686 0.94926 0.89516 0.92802 1.44620 1.30574 1.01009 1.56389 1.19803 0.94160 0.99649 1.33399 0.91296 1.26063 1.02601 0.94561 0.97011 1.70868 1.00648 1.36791 1.45345 0.84367 0.77193 0.75364 0.76957 1.19972 1.22144 1.22481 1.22359 0.91905 0.93910 0.94864 1.22718 0.84960 0.95267 0.93054 0.91685 1.86452 1.39037 1.36936 1.73971 1.22251 1.03167 0.90244 0.89661 1.22694 0.92614 1.00495 1.06428 1.18117 0.90160 0.83890 0.80076 1.90986 1.69323 1.29357 1.50634 0.87553 0.89082 0.89143 0.75501 0.89607 0.91200 0.94102 0.95419 0.92241 0.94483 0.94096 0.77606 0.81759 0.81310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.21 59.85 0.61 1.16 16 2 N -0.34 -3.32 3.62 -70.15 -0.25 -3.57 16 3 N -0.18 -1.83 10.05 33.41 0.34 -1.49 16 4 C 0.02 0.21 6.84 -82.83 -0.57 -0.36 16 5 C 0.59 7.28 7.81 -12.32 -0.10 7.18 16 6 O -0.53 -7.88 16.38 5.31 0.09 -7.79 16 7 N -0.71 -8.47 5.40 -61.23 -0.33 -8.80 16 8 C 0.14 1.85 4.74 -4.04 -0.02 1.83 16 9 C -0.11 -1.62 3.03 -88.47 -0.27 -1.89 16 10 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 11 C 0.14 2.60 6.40 -2.53 -0.02 2.58 16 12 N -0.60 -14.03 3.06 -170.06 -0.52 -14.55 16 13 C -0.34 -9.49 10.24 -15.06 -0.15 -9.65 16 14 H 0.07 2.02 8.06 -52.49 -0.42 1.60 16 15 C 0.00 0.04 5.29 -17.43 -0.09 -0.05 16 16 N -0.90 -27.14 13.70 55.49 0.76 -26.38 16 17 Si 1.03 25.33 26.22 -169.99 -4.46 20.87 16 18 H -0.27 -6.37 6.17 56.52 0.35 -6.02 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 21 C 0.10 1.93 5.80 -3.06 -0.02 1.91 16 22 C 0.10 1.54 4.09 -24.89 -0.10 1.44 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 O -0.56 -8.39 12.09 -35.23 -0.43 -8.82 16 25 C -0.03 -0.26 9.68 -38.99 -0.38 -0.64 16 26 C -0.19 -1.68 10.11 -39.12 -0.40 -2.08 16 27 C 0.48 5.30 7.47 -15.18 -0.11 5.19 16 28 O -0.53 -7.19 17.07 4.94 0.08 -7.11 16 29 H 0.11 0.59 8.05 -51.93 -0.42 0.17 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.41 4.48 7.67 -40.82 -0.31 4.16 16 33 H 0.09 1.33 7.43 -51.93 -0.39 0.94 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.57 8.01 -51.93 -0.42 0.16 16 37 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 38 H 0.04 0.80 3.76 -51.92 -0.20 0.60 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.38 4.22 9.12 45.56 0.42 4.63 16 41 H 0.16 1.18 7.72 -52.49 -0.41 0.77 16 42 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -35.55 353.26 -5.73 -41.28 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.73 Total: 4.41 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.61 Total: 6.63 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.01 Total: -54.79 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.25 Total: -23.72 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.46 Total: 20.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.55 -5.73 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958648752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.668 kcal (2) G-P(sol) polarization free energy of solvation -35.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds