Wall clock time and date at job start Fri Apr 10 2020 18:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28384 * 119.10639 * 2 1 4 4 C 1.31407 * 122.26964 * 179.97438 * 3 2 1 5 5 C 1.47877 * 119.89208 * 180.02562 * 4 3 2 6 6 O 1.21561 * 119.99907 * 179.97438 * 5 4 3 7 7 N 1.34775 * 120.00308 * 359.97438 * 5 4 3 8 8 C 1.46506 * 119.99914 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.46887 * 180.02562 * 8 7 5 10 10 H 1.08999 * 110.88763 * 57.43038 * 9 8 7 11 11 C 1.54912 * 111.00533 * 293.55099 * 9 8 7 12 12 N 1.47427 * 104.83088 * 204.88089 * 11 9 8 13 13 C 1.36936 * 125.64518 * 204.09463 * 12 11 9 14 14 H 1.07999 * 120.00294 * 25.97388 * 13 12 11 15 15 C 1.38813 * 119.99647 * 205.98267 * 13 12 11 16 16 N 1.31617 * 119.99963 * 214.50307 * 15 13 12 17 17 Si 1.86800 * 120.00338 * 34.49854 * 15 13 12 18 18 H 1.48506 * 109.46939 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47389 * 240.00486 * 17 15 13 20 20 H 1.48500 * 109.47406 * 119.99895 * 17 15 13 21 21 C 1.47016 * 108.70356 * 24.35082 * 12 11 9 22 22 C 1.54333 * 107.26692 * 358.58987 * 21 12 11 23 23 H 1.09002 * 110.85082 * 219.66694 * 22 21 12 24 24 O 1.42901 * 110.66886 * 96.51975 * 22 21 12 25 25 C 1.41580 * 120.21133 * 0.26809 * 4 3 2 26 26 C 1.36333 * 118.23513 * 359.46292 * 25 4 3 27 27 C 1.34613 * 119.09843 * 179.97438 * 2 1 3 28 28 O 1.21981 * 120.22600 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.46445 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47164 * 119.99944 * 1 2 3 31 31 H 1.08998 * 109.46977 * 240.00542 * 1 2 3 32 32 H 0.96998 * 119.99662 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47016 * 60.00491 * 8 7 5 34 34 H 1.08992 * 109.47277 * 300.00258 * 8 7 5 35 35 H 1.09000 * 110.36941 * 86.03926 * 11 9 8 36 36 H 1.09007 * 110.45669 * 323.76279 * 11 9 8 37 37 H 0.97001 * 120.00145 * 5.08052 * 16 15 13 38 38 H 1.09008 * 109.88212 * 118.13045 * 21 12 11 39 39 H 1.08996 * 109.88703 * 239.29728 * 21 12 11 40 40 H 0.96707 * 113.99813 * 66.41410 * 24 22 21 41 41 H 1.07993 * 120.87999 * 179.72576 * 25 4 3 42 42 H 1.08000 * 121.02924 * 180.23172 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0895 1.1217 0.0000 4 6 3.4016 1.1942 0.0005 5 6 4.0667 2.5150 0.0010 6 8 5.2803 2.5843 0.0020 7 7 3.3274 3.6418 0.0005 8 6 3.9864 4.9503 0.0005 9 6 2.9274 6.0547 0.0005 10 1 2.2628 5.9558 0.8587 11 6 2.1260 6.0555 -1.3252 12 7 1.6258 7.4355 -1.4629 13 6 0.5263 7.8175 -2.1842 14 1 -0.2759 7.1156 -2.3584 15 6 0.4427 9.1069 -2.6915 16 7 -0.7239 9.7122 -2.7616 17 14 1.9860 9.9830 -3.2747 18 1 3.1601 9.0923 -3.0913 19 1 2.1785 11.2254 -2.4845 20 1 1.8464 10.3274 -4.7125 21 6 2.5066 8.3342 -0.7028 22 6 3.5869 7.4587 -0.0333 23 1 3.7995 7.8093 0.9767 24 8 4.7791 7.4384 -0.8208 25 6 4.1804 0.0119 -0.0047 26 6 3.5323 -1.1875 0.0012 27 6 2.1197 -1.1762 0.0005 28 8 1.4973 -2.2253 0.0015 29 1 -0.3632 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3633 -0.5137 0.8900 32 1 2.3590 3.5865 0.0001 33 1 4.6090 5.0435 -0.8893 34 1 4.6084 5.0439 0.8906 35 1 1.2936 5.3544 -1.2658 36 1 2.7755 5.8020 -2.1632 37 1 -1.5136 9.2876 -2.3916 38 1 2.9740 9.0525 -1.3765 39 1 1.9317 8.8586 0.0605 40 1 5.2299 8.2923 -0.8739 41 1 5.2593 0.0589 -0.0088 42 1 4.0817 -2.1172 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958648752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:43 Heat of formation + Delta-G solvation = -45.667374 kcal Electronic energy + Delta-G solvation = -27060.218098 eV Core-core repulsion = 23041.895786 eV Total energy + Delta-G solvation = -4018.322312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.27859 -40.95268 -39.95122 -38.92669 -36.47667 -36.28250 -35.92616 -34.28532 -32.94001 -31.63758 -29.69831 -29.32996 -27.44502 -26.31264 -25.01580 -24.43652 -22.62541 -22.10699 -21.28314 -19.92136 -19.60655 -19.22236 -18.30767 -17.98729 -17.88740 -17.16815 -16.86634 -16.69931 -16.36895 -16.06168 -15.61873 -15.38069 -15.08159 -14.85935 -14.78011 -14.53357 -14.47043 -14.20832 -13.91876 -13.75014 -13.58393 -13.37133 -13.02917 -12.86392 -12.71620 -12.34342 -12.09425 -11.77078 -11.69377 -11.55729 -11.43802 -11.28737 -11.00333 -10.79303 -10.52022 -10.19435 -9.76578 -9.04342 -8.63532 -5.46321 -0.71521 -0.06811 0.96010 1.43693 1.53710 1.61249 1.74005 1.92801 2.37195 2.54508 2.74852 2.94275 3.25640 3.41113 3.51572 3.58528 3.68709 3.79456 3.86833 3.94577 4.25929 4.27997 4.36531 4.43624 4.48511 4.51521 4.59909 4.64486 4.74235 4.78702 4.86140 4.90524 4.93999 5.02940 5.12192 5.28946 5.38883 5.73233 6.17815 6.24637 6.36977 6.75219 6.81918 6.93535 7.00672 7.50287 8.21600 8.77142 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.002984 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.307118 B = 9380.216054 C =10554.181330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.334 5.334 3 N -0.181 5.181 4 C 0.013 3.987 5 C 0.590 3.410 6 O -0.553 6.553 7 N -0.702 5.702 8 C 0.150 3.850 9 C -0.095 4.095 10 H 0.113 0.887 11 C 0.134 3.866 12 N -0.619 5.619 13 C -0.335 4.335 14 H 0.036 0.964 15 C -0.052 4.052 16 N -0.936 5.936 17 Si 1.080 2.920 18 H -0.254 1.254 19 H -0.282 1.282 20 H -0.303 1.303 21 C 0.083 3.917 22 C 0.112 3.888 23 H 0.108 0.892 24 O -0.568 6.568 25 C -0.024 4.024 26 C -0.187 4.187 27 C 0.468 3.532 28 O -0.559 6.559 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.415 0.585 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.014 0.986 37 H 0.255 0.745 38 H 0.030 0.970 39 H 0.036 0.964 40 H 0.394 0.606 41 H 0.183 0.817 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.684 -16.648 10.570 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.156 5.156 3 N -0.012 5.012 4 C -0.157 4.157 5 C 0.373 3.627 6 O -0.429 6.429 7 N -0.353 5.353 8 C 0.027 3.973 9 C -0.114 4.114 10 H 0.131 0.869 11 C 0.009 3.991 12 N -0.347 5.347 13 C -0.464 4.464 14 H 0.054 0.946 15 C -0.250 4.250 16 N -0.576 5.576 17 Si 0.906 3.094 18 H -0.179 1.179 19 H -0.209 1.209 20 H -0.231 1.231 21 C -0.042 4.042 22 C 0.052 3.948 23 H 0.125 0.875 24 O -0.377 6.377 25 C -0.047 4.047 26 C -0.217 4.217 27 C 0.269 3.731 28 O -0.440 6.440 29 H 0.139 0.861 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.251 0.749 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.244 0.756 41 H 0.200 0.800 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 10.682 -15.912 9.750 21.503 hybrid contribution -1.165 -1.190 0.226 1.681 sum 9.517 -17.102 9.975 21.967 Atomic orbital electron populations 1.22545 0.71775 1.07004 1.05522 1.46988 1.10986 1.02246 1.55389 1.71105 1.11319 1.12740 1.06052 1.21718 0.88504 0.96213 1.09289 1.17284 0.86022 0.82652 0.76703 1.90824 1.13618 1.86791 1.51689 1.45896 1.11358 1.05417 1.72624 1.21068 0.94041 0.79012 1.03171 1.22607 0.96529 0.93343 0.98919 0.86940 1.21777 0.95222 0.87189 0.94918 1.44734 1.30216 1.03498 1.56210 1.19680 0.94778 0.98935 1.32976 0.94620 1.27136 1.04331 0.96005 0.97529 1.70966 1.01062 1.37616 1.47938 0.83691 0.74495 0.75162 0.76054 1.17937 1.20864 1.23105 1.22607 0.92739 0.94369 0.94495 1.22685 0.83633 0.94094 0.94345 0.87454 1.86434 1.38537 1.38542 1.74139 1.22375 1.03897 0.89390 0.89068 1.22894 0.91571 1.01527 1.05661 1.18516 0.91078 0.83705 0.79815 1.90969 1.70086 1.30361 1.52549 0.86108 0.88723 0.88243 0.74858 0.91536 0.89602 0.94044 0.96802 0.93608 0.95228 0.94626 0.75551 0.79982 0.79008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 10.21 127.77 1.30 2.22 16 2 N -0.33 -6.21 3.62 -494.06 -1.79 -7.99 16 3 N -0.18 -3.40 10.05 -48.20 -0.48 -3.88 16 4 C 0.01 0.26 6.84 42.59 0.29 0.55 16 5 C 0.59 13.47 7.81 86.80 0.68 14.15 16 6 O -0.55 -15.35 16.38 -3.91 -0.06 -15.42 16 7 N -0.70 -15.31 5.40 -465.92 -2.51 -17.82 16 8 C 0.15 3.59 4.74 86.38 0.41 4.00 16 9 C -0.09 -2.52 3.03 -9.40 -0.03 -2.54 16 10 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 11 C 0.13 4.94 6.40 86.86 0.56 5.50 16 12 N -0.62 -28.60 3.06 -691.96 -2.12 -30.72 16 13 C -0.34 -18.89 10.24 84.03 0.86 -18.03 16 14 H 0.04 2.19 8.06 -2.91 -0.02 2.17 16 15 C -0.05 -3.02 5.29 84.86 0.45 -2.57 16 16 N -0.94 -58.06 13.70 21.65 0.30 -57.76 16 17 Si 1.08 51.38 26.22 68.60 1.80 53.18 16 18 H -0.25 -11.14 6.17 99.48 0.61 -10.53 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 21 C 0.08 3.18 5.80 86.73 0.50 3.68 16 22 C 0.11 3.04 4.09 31.78 0.13 3.17 16 23 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 24 O -0.57 -15.01 12.09 -148.98 -1.80 -16.81 16 25 C -0.02 -0.37 9.68 22.65 0.22 -0.15 16 26 C -0.19 -2.91 10.11 22.57 0.23 -2.68 16 27 C 0.47 9.85 7.47 85.01 0.64 10.49 16 28 O -0.56 -15.00 17.07 -5.25 -0.09 -15.09 16 29 H 0.12 1.18 8.05 -2.39 -0.02 1.16 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.41 8.21 7.67 -92.71 -0.71 7.50 16 33 H 0.07 1.90 7.43 -2.39 -0.02 1.89 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.01 0.56 8.01 -2.38 -0.02 0.54 16 37 H 0.25 15.84 8.73 -92.71 -0.81 15.03 16 38 H 0.03 1.20 3.76 -2.38 -0.01 1.19 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.39 7.27 9.12 -74.05 -0.68 6.59 16 41 H 0.18 2.14 7.72 -2.91 -0.02 2.11 16 42 H 0.19 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -78.25 353.26 -0.97 -79.22 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -0.44 Total: 15.33 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 6.23 Total: 17.77 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.61 Total: -118.18 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.96 Total: -47.32 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 1.80 Total: 53.18 kcal Total: -78.25 -0.97 -79.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958648752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.554 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds