Wall clock time and date at job start Fri Apr 10 2020 18:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46850 * 2 1 4 4 N 1.46493 * 109.46927 * 119.99854 * 2 1 3 5 5 C 1.34783 * 119.99984 * 274.99949 * 4 2 1 6 6 O 1.21619 * 120.00080 * 5.13202 * 5 4 2 7 7 C 1.47304 * 119.99967 * 185.12467 * 5 4 2 8 8 C 1.38328 * 120.73627 * 354.43995 * 7 5 4 9 9 N 1.34956 * 119.01913 * 180.02562 * 8 7 5 10 10 C 1.46498 * 119.70356 * 179.97438 * 9 8 7 11 11 C 1.34454 * 120.58704 * 0.24536 * 9 8 7 12 12 O 1.21907 * 119.19421 * 179.72517 * 11 9 8 13 13 N 1.33323 * 121.60067 * 359.48521 * 11 9 8 14 14 C 1.32215 * 120.93111 * 0.51583 * 13 11 9 15 15 O 1.35011 * 120.33414 * 179.72112 * 14 13 11 16 16 C 1.52996 * 109.47214 * 239.99931 * 2 1 3 17 17 C 1.53943 * 113.74240 * 156.67618 * 16 2 1 18 18 N 1.47585 * 86.11567 * 222.04463 * 17 16 2 19 19 C 1.36939 * 134.48949 * 204.63542 * 18 17 16 20 20 H 1.08003 * 119.99464 * 184.66158 * 19 18 17 21 21 C 1.38810 * 120.00233 * 4.66509 * 19 18 17 22 22 N 1.31617 * 119.99795 * 354.53368 * 21 19 18 23 23 Si 1.86796 * 119.99954 * 174.53055 * 21 19 18 24 24 H 1.48499 * 109.47034 * 94.99736 * 23 21 19 25 25 H 1.48498 * 109.47241 * 214.99622 * 23 21 19 26 26 H 1.48499 * 109.47363 * 334.99575 * 23 21 19 27 27 C 1.47584 * 91.01429 * 24.64152 * 18 17 16 28 28 H 1.09003 * 109.47036 * 60.00051 * 1 2 3 29 29 H 1.08998 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47236 * 300.00226 * 1 2 3 31 31 H 0.97000 * 120.00441 * 95.00001 * 4 2 1 32 32 H 1.07995 * 120.48997 * 0.03540 * 8 7 5 33 33 H 1.08996 * 109.47262 * 89.99609 * 10 9 8 34 34 H 1.09002 * 109.46948 * 329.99322 * 10 9 8 35 35 H 1.09005 * 109.46851 * 209.99692 * 10 9 8 36 36 H 0.96697 * 113.99757 * 0.02562 * 15 14 13 37 37 H 1.09005 * 112.94218 * 288.40972 * 16 2 1 38 38 H 1.09000 * 113.76993 * 336.34743 * 17 16 2 39 39 H 1.09005 * 113.76885 * 107.74537 * 17 16 2 40 40 H 0.97001 * 119.99884 * 179.97438 * 22 21 19 41 41 H 1.09002 * 113.76427 * 221.05820 * 27 18 17 42 42 H 1.09002 * 113.76921 * 89.66082 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0181 2.3572 6 8 1.7707 1.1356 2.4366 7 6 2.7434 -0.6808 3.5298 8 6 3.0713 -2.0241 3.4921 9 7 3.6154 -2.5961 4.5866 10 6 3.9679 -4.0179 4.5633 11 6 3.8319 -1.8741 5.7000 12 8 4.3202 -2.4177 6.6757 13 7 3.5299 -0.5769 5.7611 14 6 2.9942 0.0457 4.7251 15 8 2.6879 1.3584 4.8021 16 6 2.0401 -0.7212 -1.2492 17 6 3.4667 -0.3146 -1.6607 18 7 2.9584 -0.3121 -3.0462 19 6 3.5330 -0.4679 -4.2795 20 1 2.9368 -0.3478 -5.1720 21 6 4.8816 -0.7801 -4.3824 22 7 5.6320 -0.8206 -3.3019 23 14 5.6313 -1.1429 -6.0544 24 1 6.2396 0.0956 -6.6034 25 1 6.6775 -2.1870 -5.9119 26 1 4.5728 -1.6256 -6.9774 27 6 1.5823 -0.0740 -2.5689 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2490 -1.6317 1.1527 32 1 2.8946 -2.6064 2.5999 33 1 4.9945 -4.1321 4.2152 34 1 3.2947 -4.5481 3.8898 35 1 3.8768 -4.4313 5.5678 36 1 2.8966 1.7614 5.6559 37 1 1.8828 -1.7992 -1.2114 38 1 3.7641 0.6701 -1.3000 39 1 4.2153 -1.0833 -1.4687 40 1 6.5743 -1.0392 -3.3738 41 1 0.8265 -0.6507 -3.1021 42 1 1.3263 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970865246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:12 Heat of formation + Delta-G solvation = -1.602322 kcal Electronic energy + Delta-G solvation = -27184.208553 eV Core-core repulsion = 23167.797045 eV Total energy + Delta-G solvation = -4016.411508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -42.22820 -39.88903 -38.91841 -38.00903 -37.09857 -34.97993 -34.85216 -32.58681 -31.86679 -30.00096 -28.02476 -27.56925 -25.43044 -25.03744 -24.29764 -23.69302 -21.72543 -20.66738 -20.09271 -19.42811 -18.54922 -17.92909 -17.03195 -16.83209 -16.46051 -16.06739 -15.62010 -15.11241 -14.97003 -14.92737 -14.51761 -14.16711 -13.93966 -13.86301 -13.65172 -13.46536 -13.10902 -13.07101 -12.50754 -12.20471 -11.90972 -11.71894 -11.39043 -11.34527 -11.26666 -10.98161 -10.75244 -10.45240 -10.42736 -10.37909 -10.05803 -9.82466 -9.76168 -9.49268 -9.07547 -8.84066 -8.79370 -6.92751 -5.82187 -3.13928 0.14838 0.94991 1.91785 2.82218 2.91803 3.07595 3.35215 3.40739 3.42464 3.49850 3.69787 3.92576 4.34641 4.40703 4.58305 4.75765 4.77952 4.89049 5.06346 5.13766 5.21466 5.23351 5.46700 5.51351 5.59835 5.73440 5.82690 5.87919 5.97084 6.19208 6.30281 6.36852 6.51499 6.59104 6.72265 6.84909 7.17379 7.31575 7.35656 7.49898 7.51809 7.76150 7.93789 8.22897 9.00016 9.66383 10.55350 11.34836 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.003028 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.985602 B = 9243.769703 C =10249.842315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.154 3.846 3 H 0.089 0.911 4 N -0.718 5.718 5 C 0.578 3.422 6 O -0.515 6.515 7 C -0.293 4.293 8 C 0.243 3.757 9 N -0.518 5.518 10 C 0.056 3.944 11 C 0.655 3.345 12 O -0.528 6.528 13 N -0.617 5.617 14 C 0.495 3.505 15 O -0.411 6.411 16 C -0.147 4.147 17 C 0.167 3.833 18 N -0.613 5.613 19 C -0.223 4.223 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.130 3.870 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.392 0.608 32 H 0.189 0.811 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.412 0.588 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 -5.328 14.610 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.107 0.893 4 N -0.369 5.369 5 C 0.363 3.637 6 O -0.391 6.391 7 C -0.306 4.306 8 C 0.102 3.898 9 N -0.231 5.231 10 C -0.086 4.086 11 C 0.356 3.644 12 O -0.402 6.402 13 N -0.376 5.376 14 C 0.293 3.707 15 O -0.202 6.202 16 C -0.167 4.167 17 C 0.042 3.958 18 N -0.339 5.339 19 C -0.351 4.351 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.004 3.996 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.226 0.774 32 H 0.206 0.794 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.269 0.731 37 H 0.106 0.894 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.102 -4.662 15.335 17.960 hybrid contribution 0.709 -0.724 -1.157 1.538 sum -7.393 -5.386 14.179 16.873 Atomic orbital electron populations 1.22141 0.95532 1.01748 1.02324 1.21124 0.93603 0.97541 0.82746 0.89260 1.45968 1.67735 1.13549 1.09686 1.17218 0.78651 0.86143 0.81736 1.90856 1.48539 1.16420 1.83240 1.19826 1.19796 0.93282 0.97651 1.22906 0.83505 0.92720 0.90672 1.46265 1.50095 1.13963 1.12824 1.22369 1.03041 0.76939 1.06250 1.17448 0.80766 0.83775 0.82368 1.90995 1.46423 1.69170 1.33615 1.69726 1.29959 1.09143 1.28733 1.20208 0.78865 0.84638 0.86947 1.85288 1.76383 1.17072 1.41415 1.23820 1.00956 0.99638 0.92249 1.22326 0.91707 0.98333 0.83447 1.45985 1.02339 1.83402 1.02131 1.19034 0.92825 1.40487 0.82747 0.90304 1.24774 0.96060 1.02146 0.97341 1.69819 1.05851 1.54534 1.26623 0.86126 0.78881 0.77778 0.83130 1.21670 1.21611 1.20552 1.22497 0.89681 0.96819 0.90633 0.91374 0.92787 0.92506 0.77363 0.79388 0.89482 0.88808 0.88008 0.73145 0.89390 0.95673 0.90944 0.93699 0.93692 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.29 37.16 0.35 -1.51 16 2 C 0.15 2.07 2.38 -67.93 -0.16 1.91 16 3 H 0.09 1.44 7.45 -51.93 -0.39 1.05 16 4 N -0.72 -7.91 5.03 -54.92 -0.28 -8.18 16 5 C 0.58 7.30 7.71 -12.57 -0.10 7.21 16 6 O -0.52 -8.46 14.98 -15.90 -0.24 -8.70 16 7 C -0.29 -3.06 5.90 -104.70 -0.62 -3.68 16 8 C 0.24 1.71 9.90 -16.15 -0.16 1.55 16 9 N -0.52 -4.45 2.96 -128.87 -0.38 -4.83 16 10 C 0.06 0.28 10.35 59.85 0.62 0.90 16 11 C 0.65 8.59 8.32 -88.50 -0.74 7.85 16 12 O -0.53 -8.53 16.66 5.00 0.08 -8.45 16 13 N -0.62 -8.08 10.38 -16.47 -0.17 -8.25 16 14 C 0.50 5.79 7.93 -15.91 -0.13 5.67 16 15 O -0.41 -4.46 11.78 -37.90 -0.45 -4.91 16 16 C -0.15 -2.33 3.50 -89.70 -0.31 -2.65 16 17 C 0.17 3.62 7.13 -2.97 -0.02 3.60 16 18 N -0.61 -14.95 3.70 -177.90 -0.66 -15.60 16 19 C -0.22 -6.08 10.69 -15.06 -0.16 -6.24 16 20 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -26.43 11.36 55.49 0.63 -25.80 16 23 Si 0.91 21.55 29.56 -169.99 -5.02 16.53 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.13 2.43 7.56 -2.97 -0.02 2.41 16 28 H 0.07 0.79 7.43 -51.93 -0.39 0.40 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.39 3.05 6.71 -40.82 -0.27 2.77 16 32 H 0.19 0.49 6.48 -52.49 -0.34 0.15 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.14 8.02 -51.93 -0.42 -0.27 16 35 H 0.10 0.62 7.35 -51.93 -0.38 0.24 16 36 H 0.41 2.55 8.98 45.56 0.41 2.96 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.03 0.59 7.96 -51.93 -0.41 0.17 16 39 H 0.07 1.73 7.07 -51.93 -0.37 1.36 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -38.77 356.21 -7.29 -46.06 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.63 Total: 0.02 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: -1.55 Total: 16.74 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.86 Total: -62.67 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.60 Total: -22.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.77 -7.29 -46.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970865246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.460 kcal (2) G-P(sol) polarization free energy of solvation -38.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds