Wall clock time and date at job start Fri Apr 10 2020 18:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46850 * 2 1 4 4 N 1.46493 * 109.46927 * 119.99854 * 2 1 3 5 5 C 1.34783 * 119.99984 * 274.99949 * 4 2 1 6 6 O 1.21619 * 120.00080 * 5.13202 * 5 4 2 7 7 C 1.47304 * 119.99967 * 185.12467 * 5 4 2 8 8 C 1.38328 * 120.73627 * 354.43995 * 7 5 4 9 9 N 1.34956 * 119.01913 * 180.02562 * 8 7 5 10 10 C 1.46498 * 119.70356 * 179.97438 * 9 8 7 11 11 C 1.34454 * 120.58704 * 0.24536 * 9 8 7 12 12 O 1.21907 * 119.19421 * 179.72517 * 11 9 8 13 13 N 1.33323 * 121.60067 * 359.48521 * 11 9 8 14 14 C 1.32215 * 120.93111 * 0.51583 * 13 11 9 15 15 O 1.35011 * 120.33414 * 179.72112 * 14 13 11 16 16 C 1.52996 * 109.47214 * 239.99931 * 2 1 3 17 17 C 1.53943 * 113.74240 * 156.67618 * 16 2 1 18 18 N 1.47585 * 86.11567 * 222.04463 * 17 16 2 19 19 C 1.36939 * 134.48949 * 204.63542 * 18 17 16 20 20 H 1.08003 * 119.99464 * 184.66158 * 19 18 17 21 21 C 1.38810 * 120.00233 * 4.66509 * 19 18 17 22 22 N 1.31617 * 119.99795 * 354.53368 * 21 19 18 23 23 Si 1.86796 * 119.99954 * 174.53055 * 21 19 18 24 24 H 1.48499 * 109.47034 * 94.99736 * 23 21 19 25 25 H 1.48498 * 109.47241 * 214.99622 * 23 21 19 26 26 H 1.48499 * 109.47363 * 334.99575 * 23 21 19 27 27 C 1.47584 * 91.01429 * 24.64152 * 18 17 16 28 28 H 1.09003 * 109.47036 * 60.00051 * 1 2 3 29 29 H 1.08998 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47236 * 300.00226 * 1 2 3 31 31 H 0.97000 * 120.00441 * 95.00001 * 4 2 1 32 32 H 1.07995 * 120.48997 * 0.03540 * 8 7 5 33 33 H 1.08996 * 109.47262 * 89.99609 * 10 9 8 34 34 H 1.09002 * 109.46948 * 329.99322 * 10 9 8 35 35 H 1.09005 * 109.46851 * 209.99692 * 10 9 8 36 36 H 0.96697 * 113.99757 * 0.02562 * 15 14 13 37 37 H 1.09005 * 112.94218 * 288.40972 * 16 2 1 38 38 H 1.09000 * 113.76993 * 336.34743 * 17 16 2 39 39 H 1.09005 * 113.76885 * 107.74537 * 17 16 2 40 40 H 0.97001 * 119.99884 * 179.97438 * 22 21 19 41 41 H 1.09002 * 113.76427 * 221.05820 * 27 18 17 42 42 H 1.09002 * 113.76921 * 89.66082 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0181 2.3572 6 8 1.7707 1.1356 2.4366 7 6 2.7434 -0.6808 3.5298 8 6 3.0713 -2.0241 3.4921 9 7 3.6154 -2.5961 4.5866 10 6 3.9679 -4.0179 4.5633 11 6 3.8319 -1.8741 5.7000 12 8 4.3202 -2.4177 6.6757 13 7 3.5299 -0.5769 5.7611 14 6 2.9942 0.0457 4.7251 15 8 2.6879 1.3584 4.8021 16 6 2.0401 -0.7212 -1.2492 17 6 3.4667 -0.3146 -1.6607 18 7 2.9584 -0.3121 -3.0462 19 6 3.5330 -0.4679 -4.2795 20 1 2.9368 -0.3478 -5.1720 21 6 4.8816 -0.7801 -4.3824 22 7 5.6320 -0.8206 -3.3019 23 14 5.6313 -1.1429 -6.0544 24 1 6.2396 0.0956 -6.6034 25 1 6.6775 -2.1870 -5.9119 26 1 4.5728 -1.6256 -6.9774 27 6 1.5823 -0.0740 -2.5689 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.2490 -1.6317 1.1527 32 1 2.8946 -2.6064 2.5999 33 1 4.9945 -4.1321 4.2152 34 1 3.2947 -4.5481 3.8898 35 1 3.8768 -4.4313 5.5678 36 1 2.8966 1.7614 5.6559 37 1 1.8828 -1.7992 -1.2114 38 1 3.7641 0.6701 -1.3000 39 1 4.2153 -1.0833 -1.4687 40 1 6.5743 -1.0392 -3.3738 41 1 0.8265 -0.6507 -3.1021 42 1 1.3263 0.9813 -2.4750 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970865246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:11 Heat of formation + Delta-G solvation = -34.702340 kcal Electronic energy + Delta-G solvation = -27185.643878 eV Core-core repulsion = 23167.797045 eV Total energy + Delta-G solvation = -4017.846832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.05814 -40.95580 -39.95039 -39.30189 -38.04565 -36.09503 -35.77954 -34.19903 -33.11238 -31.08618 -29.27159 -28.59490 -26.60156 -26.16454 -25.64154 -24.88796 -23.02331 -21.71538 -20.94767 -20.80973 -19.35786 -18.93526 -18.65052 -17.84589 -17.41978 -17.09308 -16.85815 -16.55454 -15.97012 -15.85214 -15.65218 -15.40271 -15.21210 -14.83423 -14.65021 -14.48225 -14.39629 -13.98245 -13.48687 -13.38093 -13.15721 -13.01314 -12.89340 -12.63325 -12.59141 -12.46721 -12.25934 -11.95237 -11.70193 -11.43150 -11.33067 -11.28512 -11.16764 -10.85426 -10.73983 -10.07726 -9.75841 -8.86310 -7.87588 -5.19564 -0.54144 0.04030 1.22402 1.48397 1.49016 1.58314 1.91066 2.06485 2.18007 2.50452 2.60962 2.98764 3.32493 3.34947 3.43736 3.58730 3.81990 4.03635 4.05814 4.11445 4.23500 4.40058 4.43107 4.59073 4.69787 4.79462 4.83427 4.88284 4.91603 4.96272 5.08032 5.11138 5.20869 5.33125 5.45533 5.54948 5.63974 5.75858 6.00109 6.14008 6.47855 6.63152 6.88520 6.97144 7.31039 7.65604 8.61791 9.29025 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.003028 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.985602 B = 9243.769703 C =10249.842315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.164 3.836 3 H 0.059 0.941 4 N -0.705 5.705 5 C 0.583 3.417 6 O -0.559 6.559 7 C -0.318 4.318 8 C 0.280 3.720 9 N -0.510 5.510 10 C 0.047 3.953 11 C 0.646 3.354 12 O -0.571 6.571 13 N -0.646 5.646 14 C 0.492 3.508 15 O -0.422 6.422 16 C -0.104 4.104 17 C 0.162 3.838 18 N -0.645 5.645 19 C -0.234 4.234 20 H 0.081 0.919 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.973 3.027 24 H -0.294 1.294 25 H -0.292 1.292 26 H -0.266 1.266 27 C 0.127 3.873 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.412 0.588 32 H 0.244 0.756 33 H 0.096 0.904 34 H 0.142 0.858 35 H 0.088 0.912 36 H 0.427 0.573 37 H 0.115 0.885 38 H 0.000 1.000 39 H 0.048 0.952 40 H 0.247 0.753 41 H 0.065 0.935 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.037 -7.546 13.492 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.059 3.941 3 H 0.077 0.923 4 N -0.358 5.358 5 C 0.369 3.631 6 O -0.438 6.438 7 C -0.330 4.330 8 C 0.137 3.863 9 N -0.220 5.220 10 C -0.093 4.093 11 C 0.348 3.652 12 O -0.449 6.449 13 N -0.406 5.406 14 C 0.292 3.708 15 O -0.216 6.216 16 C -0.124 4.124 17 C 0.037 3.963 18 N -0.372 5.372 19 C -0.363 4.363 20 H 0.099 0.901 21 C -0.257 4.257 22 N -0.600 5.600 23 Si 0.802 3.198 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.191 1.191 27 C 0.002 3.998 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.249 0.751 32 H 0.260 0.740 33 H 0.114 0.886 34 H 0.160 0.840 35 H 0.106 0.894 36 H 0.286 0.714 37 H 0.133 0.867 38 H 0.018 0.982 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.701 -6.903 14.203 18.534 hybrid contribution 1.170 0.000 -0.820 1.429 sum -8.532 -6.903 13.383 17.307 Atomic orbital electron populations 1.22059 0.93388 1.03334 1.02125 1.20806 0.95014 0.95774 0.82506 0.92319 1.45719 1.67281 1.14363 1.08454 1.17377 0.77867 0.85575 0.82259 1.90837 1.50510 1.18441 1.84016 1.19653 1.22007 0.94768 0.96562 1.23583 0.79884 0.91647 0.91137 1.46263 1.48673 1.15188 1.11923 1.22751 1.04960 0.74708 1.06860 1.17550 0.80580 0.83955 0.83074 1.90958 1.48527 1.69974 1.35447 1.69598 1.31258 1.09865 1.29900 1.20377 0.78478 0.84765 0.87165 1.85272 1.76350 1.17165 1.42792 1.23427 0.95837 1.00950 0.92182 1.22258 0.94548 0.96452 0.83078 1.46446 1.05116 1.83525 1.02082 1.19427 0.93214 1.39286 0.84324 0.90104 1.25545 0.96680 1.02909 1.00564 1.69993 1.05615 1.56022 1.28402 0.85140 0.78050 0.77059 0.79551 1.22120 1.21873 1.19104 1.22711 0.87659 0.97642 0.91783 0.91201 0.90239 0.93183 0.75052 0.74024 0.88574 0.84032 0.89372 0.71439 0.86746 0.98172 0.93359 0.94372 0.91705 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.29 71.98 0.67 -2.37 16 2 C 0.16 4.05 2.38 44.99 0.11 4.16 16 3 H 0.06 1.86 7.45 -2.39 -0.02 1.85 16 4 N -0.71 -13.47 5.03 -445.92 -2.24 -15.72 16 5 C 0.58 13.84 7.71 86.63 0.67 14.50 16 6 O -0.56 -18.32 14.98 16.14 0.24 -18.08 16 7 C -0.32 -6.10 5.90 -19.91 -0.12 -6.21 16 8 C 0.28 2.93 9.90 84.23 0.83 3.76 16 9 N -0.51 -7.48 2.96 -679.94 -2.01 -9.49 16 10 C 0.05 0.32 10.35 127.77 1.32 1.64 16 11 C 0.65 16.74 8.32 179.61 1.49 18.23 16 12 O -0.57 -18.81 16.66 -5.01 -0.08 -18.89 16 13 N -0.65 -17.13 10.38 -438.20 -4.55 -21.68 16 14 C 0.49 11.47 7.93 85.59 0.68 12.15 16 15 O -0.42 -9.46 11.78 -62.59 -0.74 -10.20 16 16 C -0.10 -3.04 3.50 -10.14 -0.04 -3.08 16 17 C 0.16 6.99 7.13 86.48 0.62 7.61 16 18 N -0.65 -31.04 3.70 -716.76 -2.65 -33.69 16 19 C -0.23 -12.64 10.69 84.03 0.90 -11.74 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 22 N -0.95 -55.24 11.36 21.65 0.25 -54.99 16 23 Si 0.97 44.23 29.56 68.60 2.03 46.26 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 C 0.13 4.47 7.56 86.48 0.65 5.12 16 28 H 0.07 1.40 7.43 -2.39 -0.02 1.38 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.11 8.09 -2.39 -0.02 1.10 16 31 H 0.41 4.43 6.71 -92.71 -0.62 3.81 16 32 H 0.24 -0.28 6.48 -2.91 -0.02 -0.30 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.14 -0.37 8.02 -2.39 -0.02 -0.39 16 35 H 0.09 0.93 7.35 -2.38 -0.02 0.91 16 36 H 0.43 5.72 8.98 -74.06 -0.67 5.05 16 37 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 38 H 0.00 0.02 7.96 -2.39 -0.02 0.00 16 39 H 0.05 2.31 7.07 -2.38 -0.02 2.29 16 40 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.38 8.06 -2.39 -0.02 1.37 16 Total: -1.00 -88.97 356.21 -1.71 -90.68 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -0.20 Total: 5.08 kcal Atomic # 6 Polarization: 32.47 SS G_CDS: 8.25 Total: 40.72 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -11.21 Total: -135.57 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.58 Total: -47.18 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -88.97 -1.71 -90.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970865246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.974 kcal (2) G-P(sol) polarization free energy of solvation -88.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds