Wall clock time and date at job start Fri Apr 10 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99946 * 2 1 4 4 H 1.07993 * 120.00573 * 138.90498 * 3 2 1 5 5 C 1.38813 * 119.99368 * 318.90429 * 3 2 1 6 6 N 1.31622 * 119.99909 * 161.70638 * 5 3 2 7 7 Si 1.86801 * 120.00602 * 341.70325 * 5 3 2 8 8 H 1.48501 * 109.46768 * 88.08538 * 7 5 3 9 9 H 1.48496 * 109.47452 * 208.08727 * 7 5 3 10 10 H 1.48502 * 109.46927 * 328.08807 * 7 5 3 11 11 C 1.46491 * 120.00003 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.89083 * 183.88289 * 11 2 1 13 13 C 1.55158 * 111.00699 * 60.00110 * 11 2 1 14 14 C 1.54318 * 102.94663 * 206.42098 * 13 11 2 15 15 N 1.47025 * 107.27011 * 22.19324 * 14 13 11 16 16 C 1.34772 * 125.64854 * 181.02050 * 15 14 13 17 17 O 1.21673 * 120.00158 * 174.79576 * 16 15 14 18 18 C 1.46894 * 120.00101 * 355.06691 * 16 15 14 19 19 C 1.39430 * 120.81767 * 76.33281 * 18 16 15 20 20 N 1.32574 * 119.70043 * 179.76500 * 19 18 16 21 21 C 1.31857 * 121.60870 * 0.52363 * 20 19 18 22 22 O 1.34684 * 119.10793 * 179.75694 * 21 20 19 23 23 N 1.35657 * 121.77631 * 359.72631 * 21 20 19 24 24 C 1.46491 * 119.95237 * 179.97438 * 23 21 20 25 25 C 1.35024 * 120.08668 * 0.02562 * 23 21 20 26 26 O 1.21832 * 120.76289 * 179.97438 * 25 23 21 27 27 C 1.47431 * 108.70176 * 1.28610 * 15 14 13 28 28 H 1.09000 * 109.47113 * 269.14840 * 1 2 3 29 29 H 1.08997 * 109.47063 * 29.14870 * 1 2 3 30 30 H 1.09003 * 109.46835 * 149.15042 * 1 2 3 31 31 H 0.96995 * 120.00531 * 179.97438 * 6 5 3 32 32 H 1.09005 * 110.71603 * 88.05720 * 13 11 2 33 33 H 1.08998 * 110.87086 * 324.85844 * 13 11 2 34 34 H 1.08995 * 109.88539 * 262.77931 * 14 13 11 35 35 H 1.09000 * 110.01232 * 141.68180 * 14 13 11 36 36 H 1.07994 * 120.15041 * 0.02562 * 19 18 16 37 37 H 0.96698 * 117.00578 * 359.97238 * 22 21 20 38 38 H 1.09004 * 109.47311 * 270.02389 * 24 23 21 39 39 H 1.08995 * 109.47480 * 30.02620 * 24 23 21 40 40 H 1.09007 * 109.47187 * 150.02816 * 24 23 21 41 41 H 1.08999 * 110.36374 * 94.48600 * 27 15 14 42 42 H 1.08998 * 110.36242 * 216.80166 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0301 1.3013 0.6147 5 6 1.7121 2.2399 -0.7902 6 7 2.1227 3.4651 -0.5396 7 14 0.5404 1.9196 -2.2095 8 1 -0.8597 1.9790 -1.7184 9 1 0.7410 2.9505 -3.2593 10 1 0.8087 0.5746 -2.7788 11 6 2.1975 -1.2687 0.0006 12 1 3.2718 -1.0972 0.0695 13 6 1.8484 -2.1130 -1.2535 14 6 2.1065 -3.5588 -0.7796 15 7 2.0266 -3.5578 0.6885 16 6 2.2132 -4.6280 1.4860 17 8 2.2164 -4.4926 2.6952 18 6 2.4188 -5.9572 0.8954 19 6 3.6448 -6.3058 0.3301 20 7 3.8075 -7.5132 -0.1926 21 6 2.8311 -8.3992 -0.2027 22 8 3.0502 -9.6095 -0.7514 23 7 1.6119 -8.1248 0.3252 24 6 0.5554 -9.1390 0.2920 25 6 1.3708 -6.9178 0.8804 26 8 0.2804 -6.6580 1.3576 27 6 1.7021 -2.1934 1.1433 28 1 -0.3633 -0.0153 1.0276 29 1 -0.3633 0.8975 -0.5005 30 1 -0.3633 -0.8823 -0.5270 31 1 1.8172 4.2015 -1.0920 32 1 2.5044 -1.8570 -2.0855 33 1 0.8034 -1.9795 -1.5329 34 1 3.0982 -3.8814 -1.0966 35 1 1.3502 -4.2269 -1.1916 36 1 4.4595 -5.5969 0.3220 37 1 3.9298 -9.7724 -1.1186 38 1 -0.0206 -9.0337 -0.6275 39 1 1.0035 -10.1319 0.3283 40 1 -0.1032 -9.0059 1.1504 41 1 0.6264 -2.0857 1.2823 42 1 2.2297 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972066256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:21 Heat of formation + Delta-G solvation = -15.350105 kcal Electronic energy + Delta-G solvation = -27660.122697 eV Core-core repulsion = 23643.115041 eV Total energy + Delta-G solvation = -4017.007657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33280 -39.84827 -39.07885 -37.47918 -37.23619 -35.58107 -34.91615 -31.95071 -31.14821 -29.97890 -28.53604 -28.17352 -26.23124 -25.47006 -24.19244 -23.47387 -22.40080 -20.26890 -19.67193 -19.40643 -19.10233 -17.69175 -17.33291 -17.03885 -16.52987 -16.24626 -16.00080 -15.37606 -15.14105 -14.82624 -14.80913 -14.03051 -13.91719 -13.69442 -13.55673 -13.21556 -13.10094 -13.05206 -12.56874 -12.48313 -12.41902 -12.23111 -11.91406 -11.43335 -11.11224 -10.97240 -10.78541 -10.75206 -10.56864 -10.52154 -10.16847 -9.91383 -9.77654 -9.61435 -8.70937 -8.57957 -8.36168 -6.83086 -6.02239 -3.51922 0.09334 1.25728 1.41359 2.51422 2.94250 3.06222 3.28362 3.29142 3.42941 3.47764 3.64609 4.03430 4.47978 4.50525 4.65254 4.73648 4.81936 5.04778 5.06590 5.18211 5.19574 5.23502 5.32792 5.38261 5.49847 5.71179 5.75441 5.90676 5.95240 6.15151 6.25468 6.35204 6.42229 6.46325 6.50483 6.65566 6.73128 6.82814 7.16740 7.38140 7.71524 8.02748 8.30740 8.36905 8.92216 9.64636 10.05447 11.12619 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.002970 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.360790 B = 9425.769430 C = 9522.925270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.596 5.596 3 C -0.273 4.273 4 H 0.080 0.920 5 C 0.038 3.962 6 N -0.901 5.901 7 Si 0.889 3.111 8 H -0.283 1.283 9 H -0.303 1.303 10 H -0.269 1.269 11 C 0.173 3.827 12 H 0.090 0.910 13 C -0.157 4.157 14 C 0.107 3.893 15 N -0.606 5.606 16 C 0.606 3.394 17 O -0.530 6.530 18 C -0.324 4.324 19 C 0.230 3.770 20 N -0.588 5.588 21 C 0.599 3.401 22 O -0.456 6.456 23 N -0.510 5.510 24 C 0.057 3.943 25 C 0.556 3.444 26 O -0.505 6.505 27 C 0.089 3.911 28 H 0.019 0.981 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.180 0.820 37 H 0.444 0.556 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -28.592 -4.715 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.318 5.318 3 C -0.402 4.402 4 H 0.098 0.902 5 C -0.163 4.163 6 N -0.542 5.542 7 Si 0.720 3.280 8 H -0.212 1.212 9 H -0.231 1.231 10 H -0.194 1.194 11 C 0.064 3.936 12 H 0.108 0.892 13 C -0.197 4.197 14 C -0.017 4.017 15 N -0.340 5.340 16 C 0.391 3.609 17 O -0.406 6.406 18 C -0.335 4.335 19 C 0.087 3.913 20 N -0.329 5.329 21 C 0.300 3.700 22 O -0.254 6.254 23 N -0.239 5.239 24 C -0.085 4.085 25 C 0.355 3.645 26 O -0.380 6.380 27 C -0.034 4.034 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.197 0.803 37 H 0.306 0.694 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.086 0.914 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.848 -28.524 -3.922 28.851 hybrid contribution -0.868 -0.089 -0.933 1.277 sum 0.980 -28.613 -4.855 29.038 Atomic orbital electron populations 1.21462 0.84857 0.99339 0.98679 1.43930 1.00513 1.01330 1.86018 1.18790 1.12150 0.87698 1.21555 0.90217 1.25552 0.98004 0.95369 0.97403 1.69828 1.46404 0.98600 1.39356 0.86848 0.80321 0.77670 0.83160 1.21153 1.23099 1.19366 1.21664 0.96964 0.85149 0.89869 0.89200 1.23272 1.02829 0.92604 1.00984 1.22000 1.00606 0.99001 0.80090 1.48369 1.68911 1.09336 1.07338 1.16686 0.76680 0.81955 0.85534 1.90813 1.50688 1.85244 1.13839 1.21463 0.96570 0.98634 1.16866 1.22833 0.95028 0.90188 0.83294 1.68402 1.27391 1.05240 1.31916 1.20260 0.81568 0.85293 0.82904 1.84146 1.42823 1.26875 1.71519 1.46413 1.11258 1.16850 1.49354 1.22229 0.90398 0.90445 1.05396 1.16720 0.89183 0.79592 0.78975 1.90983 1.24970 1.76111 1.45915 1.22953 1.00904 0.79533 1.00045 0.96239 0.93142 0.94988 0.92559 0.90137 0.90859 0.91778 0.92511 0.80282 0.69406 0.89884 0.88604 0.88224 0.91365 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.19 8.08 59.85 0.48 2.67 16 2 N -0.60 -13.83 2.47 -170.90 -0.42 -14.25 16 3 C -0.27 -7.49 9.87 -15.06 -0.15 -7.63 16 4 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 5 C 0.04 1.07 5.34 -17.43 -0.09 0.98 16 6 N -0.90 -27.19 13.97 55.49 0.78 -26.41 16 7 Si 0.89 21.85 25.22 -169.99 -4.29 17.56 16 8 H -0.28 -6.79 6.39 56.52 0.36 -6.43 16 9 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 C 0.17 3.31 3.56 -65.67 -0.23 3.08 16 12 H 0.09 1.74 7.96 -51.93 -0.41 1.32 16 13 C -0.16 -2.52 6.51 -24.90 -0.16 -2.69 16 14 C 0.11 1.45 6.40 -3.07 -0.02 1.43 16 15 N -0.61 -10.00 3.32 -171.84 -0.57 -10.57 16 16 C 0.61 10.54 6.90 -12.76 -0.09 10.45 16 17 O -0.53 -11.28 17.34 5.21 0.09 -11.19 16 18 C -0.32 -4.45 4.88 -104.44 -0.51 -4.96 16 19 C 0.23 2.29 10.79 -16.79 -0.18 2.10 16 20 N -0.59 -4.73 10.31 -13.97 -0.14 -4.88 16 21 C 0.60 4.22 8.60 -88.67 -0.76 3.46 16 22 O -0.46 -1.31 12.18 -15.81 -0.19 -1.50 16 23 N -0.51 -4.75 2.99 -128.29 -0.38 -5.13 16 24 C 0.06 0.35 10.16 59.84 0.61 0.96 16 25 C 0.56 7.71 7.47 -14.64 -0.11 7.60 16 26 O -0.51 -8.88 16.29 5.07 0.08 -8.80 16 27 C 0.09 1.65 6.49 -2.41 -0.02 1.63 16 28 H 0.02 0.41 8.07 -51.93 -0.42 -0.01 16 29 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 30 H 0.03 0.61 6.41 -51.93 -0.33 0.28 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.24 6.40 -51.93 -0.33 0.91 16 34 H 0.06 0.71 7.99 -51.93 -0.41 0.30 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.44 -0.77 9.08 45.56 0.41 -0.35 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.35 7.34 -51.93 -0.38 -0.04 16 40 H 0.10 0.73 7.45 -51.92 -0.39 0.34 16 41 H 0.07 1.32 6.99 -51.93 -0.36 0.95 16 42 H 0.08 1.54 7.99 -51.93 -0.41 1.12 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -37.73 347.54 -5.55 -43.28 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.50 Total: -2.44 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: -1.23 Total: 19.10 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.75 Total: -61.24 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.02 Total: -21.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.29 Total: 17.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.73 -5.55 -43.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972066256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.929 kcal (2) G-P(sol) polarization free energy of solvation -37.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds