Wall clock time and date at job start Fri Apr 10 2020 18:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99946 * 2 1 4 4 H 1.07993 * 120.00573 * 138.90498 * 3 2 1 5 5 C 1.38813 * 119.99368 * 318.90429 * 3 2 1 6 6 N 1.31622 * 119.99909 * 161.70638 * 5 3 2 7 7 Si 1.86801 * 120.00602 * 341.70325 * 5 3 2 8 8 H 1.48501 * 109.46768 * 88.08538 * 7 5 3 9 9 H 1.48496 * 109.47452 * 208.08727 * 7 5 3 10 10 H 1.48502 * 109.46927 * 328.08807 * 7 5 3 11 11 C 1.46491 * 120.00003 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.89083 * 183.88289 * 11 2 1 13 13 C 1.55158 * 111.00699 * 60.00110 * 11 2 1 14 14 C 1.54318 * 102.94663 * 206.42098 * 13 11 2 15 15 N 1.47025 * 107.27011 * 22.19324 * 14 13 11 16 16 C 1.34772 * 125.64854 * 181.02050 * 15 14 13 17 17 O 1.21673 * 120.00158 * 174.79576 * 16 15 14 18 18 C 1.46894 * 120.00101 * 355.06691 * 16 15 14 19 19 C 1.39430 * 120.81767 * 76.33281 * 18 16 15 20 20 N 1.32574 * 119.70043 * 179.76500 * 19 18 16 21 21 C 1.31857 * 121.60870 * 0.52363 * 20 19 18 22 22 O 1.34684 * 119.10793 * 179.75694 * 21 20 19 23 23 N 1.35657 * 121.77631 * 359.72631 * 21 20 19 24 24 C 1.46491 * 119.95237 * 179.97438 * 23 21 20 25 25 C 1.35024 * 120.08668 * 0.02562 * 23 21 20 26 26 O 1.21832 * 120.76289 * 179.97438 * 25 23 21 27 27 C 1.47431 * 108.70176 * 1.28610 * 15 14 13 28 28 H 1.09000 * 109.47113 * 269.14840 * 1 2 3 29 29 H 1.08997 * 109.47063 * 29.14870 * 1 2 3 30 30 H 1.09003 * 109.46835 * 149.15042 * 1 2 3 31 31 H 0.96995 * 120.00531 * 179.97438 * 6 5 3 32 32 H 1.09005 * 110.71603 * 88.05720 * 13 11 2 33 33 H 1.08998 * 110.87086 * 324.85844 * 13 11 2 34 34 H 1.08995 * 109.88539 * 262.77931 * 14 13 11 35 35 H 1.09000 * 110.01232 * 141.68180 * 14 13 11 36 36 H 1.07994 * 120.15041 * 0.02562 * 19 18 16 37 37 H 0.96698 * 117.00578 * 359.97238 * 22 21 20 38 38 H 1.09004 * 109.47311 * 270.02389 * 24 23 21 39 39 H 1.08995 * 109.47480 * 30.02620 * 24 23 21 40 40 H 1.09007 * 109.47187 * 150.02816 * 24 23 21 41 41 H 1.08999 * 110.36374 * 94.48600 * 27 15 14 42 42 H 1.08998 * 110.36242 * 216.80166 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0301 1.3013 0.6147 5 6 1.7121 2.2399 -0.7902 6 7 2.1227 3.4651 -0.5396 7 14 0.5404 1.9196 -2.2095 8 1 -0.8597 1.9790 -1.7184 9 1 0.7410 2.9505 -3.2593 10 1 0.8087 0.5746 -2.7788 11 6 2.1975 -1.2687 0.0006 12 1 3.2718 -1.0972 0.0695 13 6 1.8484 -2.1130 -1.2535 14 6 2.1065 -3.5588 -0.7796 15 7 2.0266 -3.5578 0.6885 16 6 2.2132 -4.6280 1.4860 17 8 2.2164 -4.4926 2.6952 18 6 2.4188 -5.9572 0.8954 19 6 3.6448 -6.3058 0.3301 20 7 3.8075 -7.5132 -0.1926 21 6 2.8311 -8.3992 -0.2027 22 8 3.0502 -9.6095 -0.7514 23 7 1.6119 -8.1248 0.3252 24 6 0.5554 -9.1390 0.2920 25 6 1.3708 -6.9178 0.8804 26 8 0.2804 -6.6580 1.3576 27 6 1.7021 -2.1934 1.1433 28 1 -0.3633 -0.0153 1.0276 29 1 -0.3633 0.8975 -0.5005 30 1 -0.3633 -0.8823 -0.5270 31 1 1.8172 4.2015 -1.0920 32 1 2.5044 -1.8570 -2.0855 33 1 0.8034 -1.9795 -1.5329 34 1 3.0982 -3.8814 -1.0966 35 1 1.3502 -4.2269 -1.1916 36 1 4.4595 -5.5969 0.3220 37 1 3.9298 -9.7724 -1.1186 38 1 -0.0206 -9.0337 -0.6275 39 1 1.0035 -10.1319 0.3283 40 1 -0.1032 -9.0059 1.1504 41 1 0.6264 -2.0857 1.2823 42 1 2.2297 -1.9670 2.0698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972066256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:20 Heat of formation + Delta-G solvation = -47.783061 kcal Electronic energy + Delta-G solvation = -27661.529096 eV Core-core repulsion = 23643.115041 eV Total energy + Delta-G solvation = -4018.414055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.10970 -41.05185 -39.88765 -38.91213 -37.96168 -36.62867 -36.35836 -33.84345 -32.36707 -31.25749 -29.63508 -29.07296 -28.09585 -26.47687 -25.08778 -24.82912 -23.83495 -21.31408 -20.96521 -20.31799 -19.91968 -19.03487 -18.77001 -18.07350 -17.75687 -17.43301 -17.03670 -16.66930 -16.45922 -15.89457 -15.50862 -15.36545 -15.17393 -14.90133 -14.63210 -14.57638 -14.39798 -14.33720 -14.04199 -13.79716 -13.56097 -13.40481 -13.12322 -13.06367 -12.50277 -12.46634 -12.31429 -12.06196 -12.00800 -11.61402 -11.50643 -11.43919 -11.39035 -11.03046 -10.64566 -9.75480 -9.58481 -8.75450 -8.19133 -5.67361 -0.63725 0.58074 0.60463 1.34854 1.41977 1.44112 1.56630 1.87477 2.31205 2.33615 2.43712 3.06411 3.07637 3.19780 3.30025 3.51267 3.81324 3.93778 4.06448 4.13777 4.29066 4.30389 4.33128 4.36796 4.49418 4.53212 4.64336 4.69117 4.74223 4.80998 4.84322 4.95244 5.00411 5.13787 5.20771 5.23054 5.33608 5.93390 6.00478 6.19082 6.44402 6.49424 6.58108 6.93844 7.02988 7.56851 8.00902 8.99545 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025394 B = 0.002970 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.360790 B = 9425.769430 C = 9522.925270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.607 5.607 3 C -0.266 4.266 4 H 0.040 0.960 5 C -0.018 4.018 6 N -0.952 5.952 7 Si 0.955 3.045 8 H -0.273 1.273 9 H -0.309 1.309 10 H -0.247 1.247 11 C 0.169 3.831 12 H 0.083 0.917 13 C -0.146 4.146 14 C 0.113 3.887 15 N -0.606 5.606 16 C 0.606 3.394 17 O -0.584 6.584 18 C -0.370 4.370 19 C 0.268 3.732 20 N -0.581 5.581 21 C 0.618 3.382 22 O -0.432 6.432 23 N -0.510 5.510 24 C 0.053 3.947 25 C 0.553 3.447 26 O -0.561 6.561 27 C 0.097 3.903 28 H 0.019 0.981 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.265 0.735 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.203 0.797 37 H 0.467 0.533 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -32.594 -7.759 33.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.330 5.330 3 C -0.395 4.395 4 H 0.058 0.942 5 C -0.215 4.215 6 N -0.595 5.595 7 Si 0.783 3.217 8 H -0.201 1.201 9 H -0.238 1.238 10 H -0.170 1.170 11 C 0.061 3.939 12 H 0.101 0.899 13 C -0.186 4.186 14 C -0.009 4.009 15 N -0.338 5.338 16 C 0.394 3.606 17 O -0.464 6.464 18 C -0.382 4.382 19 C 0.121 3.879 20 N -0.322 5.322 21 C 0.320 3.680 22 O -0.233 6.233 23 N -0.237 5.237 24 C -0.088 4.088 25 C 0.354 3.646 26 O -0.441 6.441 27 C -0.027 4.027 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.219 0.781 37 H 0.334 0.666 38 H 0.115 0.885 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.352 -32.676 -7.042 33.509 hybrid contribution -0.870 0.942 0.053 1.283 sum 1.482 -31.735 -6.989 32.529 Atomic orbital electron populations 1.21499 0.83901 1.00002 0.99018 1.43952 1.01204 1.01396 1.86481 1.18632 1.10987 0.89567 1.20354 0.94215 1.26215 1.00517 0.94803 0.99947 1.69972 1.49072 0.99697 1.40775 0.85778 0.78485 0.78189 0.79272 1.20070 1.23805 1.17009 1.21685 0.96212 0.83969 0.92027 0.89897 1.23149 1.02941 0.93133 0.99370 1.22128 1.03215 0.97611 0.77957 1.48428 1.68444 1.08250 1.08703 1.17254 0.75190 0.83227 0.84901 1.90766 1.53107 1.86239 1.16335 1.21027 0.98600 0.97136 1.21405 1.23153 0.93692 0.90870 0.80149 1.68589 1.27263 1.04570 1.31784 1.20386 0.80413 0.86044 0.81128 1.84190 1.44850 1.24049 1.70180 1.46267 1.12728 1.16137 1.48546 1.22477 0.90013 0.90859 1.05425 1.16717 0.88433 0.80724 0.78727 1.90942 1.26908 1.77598 1.48634 1.22645 0.99858 0.81173 0.99060 0.96306 0.94501 0.91924 0.92644 0.88641 0.91135 0.88258 0.90956 0.78065 0.66563 0.88495 0.85452 0.89893 0.92388 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.23 8.08 127.77 1.03 5.27 16 2 N -0.61 -28.19 2.47 -694.60 -1.71 -29.91 16 3 C -0.27 -14.95 9.87 84.03 0.83 -14.12 16 4 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 5 C -0.02 -1.04 5.34 84.86 0.45 -0.59 16 6 N -0.95 -59.24 13.97 21.65 0.30 -58.94 16 7 Si 0.95 44.89 25.22 68.60 1.73 46.62 16 8 H -0.27 -12.33 6.39 99.48 0.64 -11.70 16 9 H -0.31 -14.78 7.11 99.48 0.71 -14.08 16 10 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 11 C 0.17 6.41 3.56 46.46 0.17 6.57 16 12 H 0.08 3.23 7.96 -2.39 -0.02 3.21 16 13 C -0.15 -4.29 6.51 31.78 0.21 -4.09 16 14 C 0.11 2.74 6.40 86.73 0.55 3.29 16 15 N -0.61 -19.60 3.32 -815.81 -2.71 -22.31 16 16 C 0.61 21.22 6.90 86.51 0.60 21.81 16 17 O -0.58 -26.02 17.34 -4.26 -0.07 -26.10 16 18 C -0.37 -9.68 4.88 -19.75 -0.10 -9.77 16 19 C 0.27 4.44 10.79 84.87 0.92 5.36 16 20 N -0.58 -6.77 10.31 -311.73 -3.21 -9.98 16 21 C 0.62 6.03 8.60 179.67 1.54 7.57 16 22 O -0.43 -0.08 12.18 -79.49 -0.97 -1.05 16 23 N -0.51 -8.14 2.99 -789.43 -2.36 -10.51 16 24 C 0.05 0.52 10.16 127.77 1.30 1.81 16 25 C 0.55 14.86 7.47 85.18 0.64 15.50 16 26 O -0.56 -20.23 16.29 -4.77 -0.08 -20.31 16 27 C 0.10 3.66 6.49 86.93 0.56 4.22 16 28 H 0.02 0.79 8.07 -2.39 -0.02 0.77 16 29 H 0.04 1.67 3.27 -2.39 -0.01 1.66 16 30 H 0.06 2.26 6.41 -2.39 -0.02 2.25 16 31 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.07 2.14 6.40 -2.39 -0.02 2.12 16 34 H 0.10 1.75 7.99 -2.39 -0.02 1.74 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.47 -4.45 9.08 -74.06 -0.67 -5.12 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.13 0.40 7.34 -2.39 -0.02 0.38 16 40 H 0.08 1.15 7.45 -2.38 -0.02 1.13 16 41 H 0.06 2.28 6.99 -2.39 -0.02 2.27 16 42 H 0.06 2.35 7.99 -2.39 -0.02 2.34 16 Total: -1.00 -88.09 347.54 -0.05 -88.14 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: 0.33 Total: 1.50 kcal Atomic # 6 Polarization: 34.15 SS G_CDS: 8.70 Total: 42.85 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -9.70 Total: -131.65 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.12 Total: -47.46 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.73 Total: 46.62 kcal Total: -88.09 -0.05 -88.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972066256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.358 kcal (2) G-P(sol) polarization free energy of solvation -88.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds