Wall clock time and date at job start Fri Apr 10 2020 18:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 120.00096 * 2 1 4 4 H 1.08006 * 119.99980 * 144.57392 * 3 2 1 5 5 C 1.38806 * 120.00454 * 324.58152 * 3 2 1 6 6 N 1.31616 * 120.00358 * 157.83782 * 5 3 2 7 7 Si 1.86800 * 119.99885 * 337.83819 * 5 3 2 8 8 H 1.48499 * 109.47313 * 92.20202 * 7 5 3 9 9 H 1.48496 * 109.47221 * 212.20252 * 7 5 3 10 10 H 1.48502 * 109.47177 * 332.20464 * 7 5 3 11 11 C 1.46504 * 119.99876 * 180.02562 * 2 1 3 12 12 H 1.08995 * 110.63690 * 178.31082 * 11 2 1 13 13 C 1.55448 * 110.70619 * 54.99653 * 11 2 1 14 14 C 1.54914 * 101.44802 * 206.14621 * 13 11 2 15 15 N 1.47429 * 104.92743 * 37.00727 * 14 13 11 16 16 C 1.34771 * 125.64414 * 155.83584 * 15 14 13 17 17 O 1.21621 * 119.99770 * 175.11981 * 16 15 14 18 18 C 1.47310 * 120.00232 * 355.12355 * 16 15 14 19 19 C 1.38318 * 120.73615 * 73.12065 * 18 16 15 20 20 N 1.34956 * 119.01637 * 179.77744 * 19 18 16 21 21 C 1.46507 * 119.70221 * 180.24515 * 20 19 18 22 22 C 1.34448 * 120.59256 * 0.50015 * 20 19 18 23 23 O 1.21907 * 119.20372 * 179.76352 * 22 20 19 24 24 N 1.33329 * 121.59509 * 359.74438 * 22 20 19 25 25 C 1.32211 * 120.93322 * 359.97438 * 24 22 20 26 26 O 1.35005 * 120.33507 * 180.02562 * 25 24 22 27 27 C 1.47022 * 108.70259 * 335.81353 * 15 14 13 28 28 H 1.08998 * 109.46689 * 266.20332 * 1 2 3 29 29 H 1.09003 * 109.46855 * 26.20134 * 1 2 3 30 30 H 1.08997 * 109.47456 * 146.20280 * 1 2 3 31 31 H 0.97003 * 120.00198 * 179.97438 * 6 5 3 32 32 H 1.08996 * 111.11353 * 88.09454 * 13 11 2 33 33 H 1.08990 * 111.01661 * 324.15199 * 13 11 2 34 34 H 1.09002 * 110.36384 * 278.11582 * 14 13 11 35 35 H 1.08997 * 110.36630 * 155.90006 * 14 13 11 36 36 H 1.07997 * 120.49161 * 0.02562 * 19 18 16 37 37 H 1.08997 * 109.46702 * 180.25535 * 21 20 19 38 38 H 1.08999 * 109.46985 * 300.25947 * 21 20 19 39 39 H 1.09007 * 109.46814 * 60.25696 * 21 20 19 40 40 H 0.96701 * 114.00070 * 5.02407 * 26 25 24 41 41 H 1.09005 * 109.87744 * 120.47919 * 27 15 14 42 42 H 1.08999 * 109.88187 * 241.64079 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0798 1.2724 0.5422 5 6 1.6485 2.2768 -0.6966 6 7 2.0246 3.4952 -0.3706 7 14 0.4399 2.0157 -2.0969 8 1 -0.9477 2.0869 -1.5729 9 1 0.6362 3.0707 -3.1233 10 1 0.6706 0.6819 -2.7076 11 6 2.1975 -1.2688 -0.0006 12 1 3.2726 -1.0917 -0.0306 13 6 1.7500 -2.1613 -1.1920 14 6 2.0637 -3.5781 -0.6497 15 7 1.7323 -3.5173 0.7856 16 6 1.4052 -4.5697 1.5613 17 8 1.2364 -4.4154 2.7559 18 6 1.2522 -5.9069 0.9625 19 6 2.3582 -6.6264 0.5475 20 7 2.1783 -7.8501 0.0077 21 6 3.3396 -8.6275 -0.4320 22 6 0.9425 -8.3600 -0.1349 23 8 0.8089 -9.4661 -0.6298 24 7 -0.1405 -7.6855 0.2521 25 6 -0.0353 -6.4839 0.7936 26 8 -1.1400 -5.8118 1.1816 27 6 1.8182 -2.1186 1.2305 28 1 -0.3632 -0.0680 1.0254 29 1 -0.3633 0.9221 -0.4538 30 1 -0.3634 -0.8540 -0.5716 31 1 1.6746 4.2576 -0.8577 32 1 2.3361 -1.9463 -2.0855 33 1 0.6842 -2.0453 -1.3885 34 1 3.1198 -3.8110 -0.7857 35 1 1.4442 -4.3218 -1.1509 36 1 3.3514 -6.2166 0.6576 37 1 3.0048 -9.5801 -0.8425 38 1 3.8801 -8.0715 -1.1980 39 1 3.9980 -8.8092 0.4176 40 1 -1.9592 -6.3183 1.0954 41 1 0.8540 -1.7944 1.6221 42 1 2.5848 -2.0206 1.9991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980381427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:27 Heat of formation + Delta-G solvation = -11.831287 kcal Electronic energy + Delta-G solvation = -27754.164652 eV Core-core repulsion = 23737.309583 eV Total energy + Delta-G solvation = -4016.855069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.28315 -40.00506 -39.03881 -37.66307 -37.09423 -35.09653 -35.04182 -32.30560 -31.58686 -30.17206 -28.51330 -28.00545 -26.27815 -25.50767 -24.57031 -23.27760 -22.56315 -20.23354 -20.18883 -19.43006 -18.70451 -17.80614 -17.16550 -17.01011 -16.63307 -16.29807 -15.99703 -15.42626 -15.14575 -14.93150 -14.58261 -14.24157 -14.17807 -13.79534 -13.77474 -13.23370 -13.21503 -13.14835 -12.63580 -12.50149 -12.28594 -12.04782 -11.99160 -11.57883 -11.32794 -11.07107 -10.98364 -10.58849 -10.58718 -10.48633 -10.30058 -10.00303 -9.93263 -9.64629 -9.01719 -8.62585 -8.58225 -7.01629 -6.09126 -3.51458 0.13092 1.00994 1.82723 2.41311 2.80503 2.93772 3.23799 3.29198 3.39522 3.43155 3.67288 3.93392 4.21506 4.42411 4.52241 4.65088 4.69166 4.72576 4.82876 4.93511 5.07022 5.09689 5.23034 5.30124 5.44938 5.53884 5.62369 5.75935 5.77803 6.02886 6.11028 6.22962 6.32344 6.35194 6.55064 6.62427 6.69100 6.72326 7.29558 7.48349 7.68730 7.90453 8.06433 8.25268 8.83568 9.58670 9.96049 11.06032 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.003095 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.744612 B = 9045.541970 C = 9097.225927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.596 5.596 3 C -0.276 4.276 4 H 0.083 0.917 5 C 0.036 3.964 6 N -0.897 5.897 7 Si 0.885 3.115 8 H -0.285 1.285 9 H -0.303 1.303 10 H -0.270 1.270 11 C 0.173 3.827 12 H 0.091 0.909 13 C -0.158 4.158 14 C 0.099 3.901 15 N -0.603 5.603 16 C 0.596 3.404 17 O -0.523 6.523 18 C -0.282 4.282 19 C 0.238 3.762 20 N -0.519 5.519 21 C 0.053 3.947 22 C 0.655 3.345 23 O -0.530 6.530 24 N -0.611 5.611 25 C 0.490 3.510 26 O -0.431 6.431 27 C 0.089 3.911 28 H 0.019 0.981 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.190 0.810 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.420 0.580 41 H 0.074 0.926 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -21.139 -1.206 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.317 5.317 3 C -0.404 4.404 4 H 0.100 0.900 5 C -0.165 4.165 6 N -0.538 5.538 7 Si 0.716 3.284 8 H -0.214 1.214 9 H -0.231 1.231 10 H -0.195 1.195 11 C 0.063 3.937 12 H 0.109 0.891 13 C -0.198 4.198 14 C -0.024 4.024 15 N -0.337 5.337 16 C 0.381 3.619 17 O -0.399 6.399 18 C -0.295 4.295 19 C 0.098 3.902 20 N -0.233 5.233 21 C -0.089 4.089 22 C 0.356 3.644 23 O -0.405 6.405 24 N -0.369 5.369 25 C 0.288 3.712 26 O -0.225 6.225 27 C -0.035 4.035 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.207 0.793 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.277 0.723 41 H 0.092 0.908 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.998 -21.692 -0.933 21.803 hybrid contribution -0.575 0.052 -0.839 1.019 sum 1.423 -21.639 -1.773 21.759 Atomic orbital electron populations 1.21422 0.84711 0.99484 0.98546 1.44015 1.00579 1.01358 1.85777 1.18802 1.08277 0.86261 1.27045 0.89969 1.25417 0.98167 0.95147 0.97771 1.69859 1.45939 0.97706 1.40305 0.86892 0.80520 0.77515 0.83462 1.21372 1.23069 1.19461 1.21527 0.97086 0.85368 0.89686 0.89133 1.23451 1.02901 0.92931 1.00471 1.22363 0.99913 0.99423 0.80706 1.48463 1.66917 1.07706 1.10619 1.16843 0.77584 0.82022 0.85493 1.90840 1.50248 1.84554 1.14254 1.19492 0.90802 1.00741 1.18424 1.22573 1.00257 0.83135 0.84191 1.46126 1.11656 1.15518 1.50048 1.22371 0.85828 0.98832 1.01897 1.17387 0.78904 0.87095 0.80971 1.90987 1.84012 1.18456 1.47005 1.69680 1.29329 1.09702 1.28175 1.20125 0.86213 0.85237 0.79605 1.85079 1.17161 1.42220 1.78023 1.22770 1.02677 0.78538 0.99502 0.96256 0.93042 0.94985 0.92530 0.89886 0.90606 0.91229 0.91617 0.79291 0.87196 0.89404 0.89546 0.72263 0.90769 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.13 8.39 59.85 0.50 2.63 16 2 N -0.60 -12.98 2.53 -171.21 -0.43 -13.41 16 3 C -0.28 -7.21 9.89 -15.06 -0.15 -7.36 16 4 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 5 C 0.04 0.99 5.30 -17.43 -0.09 0.90 16 6 N -0.90 -26.37 13.97 55.49 0.78 -25.60 16 7 Si 0.89 21.20 25.06 -169.99 -4.26 16.94 16 8 H -0.29 -6.70 6.52 56.52 0.37 -6.33 16 9 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 11 C 0.17 2.94 3.45 -65.94 -0.23 2.72 16 12 H 0.09 1.53 7.95 -51.93 -0.41 1.11 16 13 C -0.16 -2.20 6.64 -24.42 -0.16 -2.36 16 14 C 0.10 1.05 6.52 -2.52 -0.02 1.04 16 15 N -0.60 -7.99 3.33 -171.82 -0.57 -8.56 16 16 C 0.60 8.18 6.90 -12.57 -0.09 8.09 16 17 O -0.52 -9.25 17.44 5.26 0.09 -9.16 16 18 C -0.28 -3.03 4.59 -104.70 -0.48 -3.51 16 19 C 0.24 1.71 9.99 -16.15 -0.16 1.55 16 20 N -0.52 -4.27 2.96 -128.87 -0.38 -4.65 16 21 C 0.05 0.23 10.57 59.85 0.63 0.86 16 22 C 0.65 8.30 8.32 -88.50 -0.74 7.56 16 23 O -0.53 -8.29 16.42 5.00 0.08 -8.21 16 24 N -0.61 -7.80 10.38 -16.47 -0.17 -7.97 16 25 C 0.49 5.63 7.93 -15.91 -0.13 5.50 16 26 O -0.43 -4.50 13.08 -16.73 -0.22 -4.72 16 27 C 0.09 1.41 6.51 -3.06 -0.02 1.39 16 28 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 29 H 0.05 1.17 3.06 -51.93 -0.16 1.01 16 30 H 0.03 0.58 6.07 -51.93 -0.32 0.27 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.16 6.08 -51.93 -0.32 0.84 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.63 7.61 -51.93 -0.40 0.23 16 36 H 0.19 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.11 0.67 6.82 -51.93 -0.35 0.31 16 38 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.19 8.14 -51.92 -0.42 -0.23 16 40 H 0.42 2.43 8.98 45.56 0.41 2.84 16 41 H 0.07 1.34 6.85 -51.93 -0.36 0.98 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -37.15 347.17 -5.41 -42.55 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -4.43 Total: -1.44 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: -1.12 Total: 19.00 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.78 Total: -60.19 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.04 Total: -22.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.26 Total: 16.94 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -37.15 -5.41 -42.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980381427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.720 kcal (2) G-P(sol) polarization free energy of solvation -37.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds