Wall clock time and date at job start Fri Apr 10 2020 18:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36938 * 120.00365 * 2 1 4 4 H 1.07999 * 120.00473 * 152.98482 * 3 2 1 5 5 C 1.38819 * 119.99491 * 332.70806 * 3 2 1 6 6 N 1.31612 * 120.00178 * 350.24405 * 5 3 2 7 7 Si 1.86804 * 119.99696 * 170.23985 * 5 3 2 8 8 H 1.48498 * 109.47072 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46609 * 120.00110 * 7 5 3 10 10 H 1.48498 * 109.46947 * 240.00347 * 7 5 3 11 11 C 1.46501 * 120.00143 * 180.02562 * 2 1 3 12 12 H 1.09005 * 110.64333 * 181.68460 * 11 2 1 13 13 C 1.55155 * 110.71771 * 305.01922 * 11 2 1 14 14 C 1.54908 * 101.58094 * 153.86588 * 13 11 2 15 15 N 1.47419 * 104.83340 * 322.98808 * 14 13 11 16 16 C 1.34783 * 125.65214 * 204.09355 * 15 14 13 17 17 O 1.21616 * 119.99918 * 175.07770 * 16 15 14 18 18 C 1.47307 * 119.99538 * 355.07501 * 16 15 14 19 19 C 1.38320 * 120.73790 * 284.49728 * 18 16 15 20 20 N 1.34945 * 119.02198 * 179.97438 * 19 18 16 21 21 C 1.46502 * 119.70502 * 180.02562 * 20 19 18 22 22 C 1.34460 * 120.59034 * 359.97438 * 20 19 18 23 23 O 1.21906 * 119.19870 * 179.97438 * 22 20 19 24 24 N 1.33319 * 121.59335 * 0.02562 * 22 20 19 25 25 C 1.32217 * 120.93683 * 359.72326 * 24 22 20 26 26 O 1.35007 * 120.33515 * 180.26043 * 25 24 22 27 27 C 1.47024 * 108.70480 * 24.13078 * 15 14 13 28 28 H 1.08996 * 109.47635 * 92.36664 * 1 2 3 29 29 H 1.09005 * 109.46962 * 212.37237 * 1 2 3 30 30 H 1.09008 * 109.46854 * 332.36524 * 1 2 3 31 31 H 0.97002 * 119.99951 * 179.97438 * 6 5 3 32 32 H 1.09003 * 111.00629 * 271.93843 * 13 11 2 33 33 H 1.08996 * 111.00377 * 35.79096 * 13 11 2 34 34 H 1.09007 * 110.36354 * 204.15177 * 14 13 11 35 35 H 1.08999 * 110.46500 * 81.87895 * 14 13 11 36 36 H 1.08008 * 120.48956 * 0.02562 * 19 18 16 37 37 H 1.09007 * 109.47001 * 90.00607 * 21 20 19 38 38 H 1.09006 * 109.46982 * 210.00510 * 21 20 19 39 39 H 1.08998 * 109.47435 * 330.00314 * 21 20 19 40 40 H 0.96695 * 114.00246 * 5.27611 * 26 25 24 41 41 H 1.08998 * 109.88392 * 239.52841 * 27 15 14 42 42 H 1.08997 * 109.88553 * 118.34802 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1413 1.2369 0.4248 5 6 1.5715 2.3211 -0.5513 6 7 0.4554 2.2221 -1.2417 7 14 2.3775 3.9894 -0.3129 8 1 3.6135 3.8311 0.4948 9 1 2.7225 4.5660 -1.6372 10 1 1.4374 4.8970 0.3925 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0917 0.0295 13 6 1.7507 -2.1610 1.1875 14 6 2.0638 -3.5785 0.6468 15 7 1.7323 -3.5167 -0.7883 16 6 1.4054 -4.5686 -1.5651 17 8 1.0629 -4.3897 -2.7182 18 6 1.4632 -5.9347 -1.0172 19 6 2.6771 -6.5714 -0.8319 20 7 2.6896 -7.8228 -0.3270 21 6 3.9670 -8.5109 -0.1241 22 6 1.5404 -8.4434 -0.0077 23 8 1.5813 -9.5741 0.4461 24 7 0.3573 -7.8525 -0.1764 25 6 0.2734 -6.6255 -0.6617 26 8 -0.9309 -6.0367 -0.8226 27 6 1.8181 -2.1177 -1.2322 28 1 -0.3634 -0.0424 -1.0267 29 1 -0.3633 -0.8680 0.5503 30 1 -0.3633 0.9105 0.4767 31 1 0.0512 3.0155 -1.6266 32 1 2.3373 -1.9451 2.0805 33 1 0.6850 -2.0445 1.3845 34 1 1.4430 -4.3213 1.1479 35 1 3.1194 -3.8136 0.7825 36 1 3.6013 -6.0740 -1.0866 37 1 4.3396 -8.2973 0.8778 38 1 3.8227 -9.5855 -0.2366 39 1 4.6890 -8.1621 -0.8623 40 1 -1.6715 -6.5564 -0.4814 41 1 0.8539 -1.7931 -1.6234 42 1 2.5847 -2.0190 -2.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980381428.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:05 Heat of formation + Delta-G solvation = -50.857338 kcal Electronic energy + Delta-G solvation = -27655.120633 eV Core-core repulsion = 23636.573267 eV Total energy + Delta-G solvation = -4018.547366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.05746 -41.04136 -39.87098 -38.82388 -37.99536 -36.50373 -35.82161 -33.62766 -32.63114 -31.10564 -29.43080 -28.56262 -28.02281 -26.28666 -25.59173 -24.47269 -23.72915 -21.21586 -21.01715 -20.69860 -19.43844 -18.90739 -18.68205 -17.89605 -17.49405 -17.27809 -16.99613 -16.60329 -16.19912 -15.67843 -15.53384 -15.25268 -15.05001 -14.99805 -14.69696 -14.45634 -14.38751 -13.95690 -13.69187 -13.45510 -13.29889 -13.10325 -12.76850 -12.66180 -12.49875 -12.36086 -12.28999 -12.16407 -12.02517 -11.78952 -11.48084 -11.38370 -11.32878 -10.93494 -10.60885 -9.82436 -9.65913 -8.73133 -7.83032 -5.35208 -0.52396 0.17724 1.12976 1.46431 1.49908 1.51515 1.61419 1.94076 2.08468 2.45794 2.53291 2.99981 3.27301 3.33515 3.49208 3.61679 3.88123 3.96079 4.06595 4.14375 4.23235 4.34641 4.40570 4.45704 4.49625 4.70284 4.80374 4.83610 4.91108 4.94826 5.08129 5.09380 5.21076 5.25136 5.34415 5.48570 5.68137 5.71076 6.05974 6.36736 6.47592 6.51048 6.86744 7.03227 7.16041 7.85922 8.32966 9.21572 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027248 B = 0.002880 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.345613 B = 9718.442127 C =10070.330382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.600 5.600 3 C -0.264 4.264 4 H 0.081 0.919 5 C -0.052 4.052 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.259 1.259 9 H -0.297 1.297 10 H -0.295 1.295 11 C 0.166 3.834 12 H 0.093 0.907 13 C -0.143 4.143 14 C 0.108 3.892 15 N -0.599 5.599 16 C 0.601 3.399 17 O -0.576 6.576 18 C -0.308 4.308 19 C 0.279 3.721 20 N -0.508 5.508 21 C 0.051 3.949 22 C 0.647 3.353 23 O -0.571 6.571 24 N -0.638 5.638 25 C 0.488 3.512 26 O -0.444 6.444 27 C 0.098 3.902 28 H -0.012 1.012 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.247 0.753 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.242 0.758 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.434 0.566 41 H 0.032 0.968 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 -18.740 5.579 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.321 5.321 3 C -0.394 4.394 4 H 0.099 0.901 5 C -0.247 4.247 6 N -0.586 5.586 7 Si 0.798 3.202 8 H -0.183 1.183 9 H -0.224 1.224 10 H -0.222 1.222 11 C 0.058 3.942 12 H 0.111 0.889 13 C -0.182 4.182 14 C -0.014 4.014 15 N -0.331 5.331 16 C 0.388 3.612 17 O -0.455 6.455 18 C -0.320 4.320 19 C 0.138 3.862 20 N -0.219 5.219 21 C -0.089 4.089 22 C 0.349 3.651 23 O -0.449 6.449 24 N -0.397 5.397 25 C 0.289 3.711 26 O -0.240 6.240 27 C -0.027 4.027 28 H 0.006 0.994 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.258 0.742 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.153 0.847 40 H 0.295 0.705 41 H 0.050 0.950 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.122 -19.450 5.198 22.102 hybrid contribution -0.506 1.319 -0.513 1.503 sum 8.617 -18.130 4.685 20.613 Atomic orbital electron populations 1.20425 0.83399 0.96570 0.96203 1.44070 1.01696 1.01273 1.85100 1.19658 1.01263 0.87054 1.31391 0.90085 1.25953 0.98639 1.02486 0.97636 1.70234 1.21934 1.28434 1.37953 0.85167 0.78278 0.79867 0.76885 1.18256 1.22400 1.22223 1.21629 0.96652 0.84473 0.91492 0.88916 1.23220 1.02215 0.93554 0.99240 1.22536 1.02698 0.97808 0.78332 1.48514 1.66520 1.06232 1.11854 1.17201 0.76599 0.83243 0.84149 1.90820 1.48716 1.86090 1.19900 1.19220 0.92063 0.98314 1.22393 1.23224 0.99501 0.82352 0.81160 1.46184 1.12109 1.13937 1.49677 1.22712 0.80344 0.99432 1.06408 1.17467 0.80668 0.86637 0.80338 1.90964 1.85898 1.18299 1.49753 1.69566 1.25650 1.11407 1.33076 1.20212 0.86127 0.85384 0.79424 1.85079 1.15441 1.47671 1.75845 1.22554 1.00112 0.80390 0.99677 0.99355 0.95405 0.95677 0.94365 0.87904 0.92133 0.89993 0.87139 0.74165 0.87772 0.89642 0.84736 0.70504 0.94980 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.64 7.94 127.77 1.01 9.66 16 2 N -0.60 -27.77 2.92 -696.14 -2.03 -29.80 16 3 C -0.26 -13.42 9.56 84.04 0.80 -12.62 16 4 H 0.08 3.87 7.85 -2.91 -0.02 3.84 16 5 C -0.05 -2.79 5.10 84.86 0.43 -2.35 16 6 N -0.94 -54.88 10.85 21.65 0.23 -54.65 16 7 Si 0.97 43.20 29.57 68.60 2.03 45.22 16 8 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 9 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.30 -13.32 7.11 99.48 0.71 -12.62 16 11 C 0.17 5.71 3.45 46.18 0.16 5.87 16 12 H 0.09 2.96 7.95 -2.38 -0.02 2.94 16 13 C -0.14 -3.61 6.62 31.98 0.21 -3.40 16 14 C 0.11 1.99 6.64 86.86 0.58 2.57 16 15 N -0.60 -16.07 3.33 -815.79 -2.71 -18.78 16 16 C 0.60 17.04 6.90 86.63 0.60 17.64 16 17 O -0.58 -22.34 17.44 -4.08 -0.07 -22.41 16 18 C -0.31 -6.30 4.61 -19.92 -0.09 -6.39 16 19 C 0.28 3.04 10.16 84.23 0.86 3.90 16 20 N -0.51 -6.88 2.96 -679.92 -2.01 -8.90 16 21 C 0.05 0.26 10.35 127.77 1.32 1.58 16 22 C 0.65 15.89 8.32 179.61 1.49 17.39 16 23 O -0.57 -17.96 16.67 -5.01 -0.08 -18.04 16 24 N -0.64 -16.30 10.38 -438.21 -4.55 -20.85 16 25 C 0.49 11.25 7.93 85.59 0.68 11.93 16 26 O -0.44 -9.85 13.08 -82.79 -1.08 -10.93 16 27 C 0.10 3.46 6.51 86.73 0.56 4.03 16 28 H -0.01 -0.65 7.34 -2.39 -0.02 -0.67 16 29 H 0.03 1.16 6.07 -2.38 -0.01 1.14 16 30 H 0.02 1.31 7.05 -2.38 -0.02 1.29 16 31 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.06 1.78 6.08 -2.39 -0.01 1.76 16 34 H 0.08 1.33 7.78 -2.38 -0.02 1.31 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.24 0.09 8.05 -2.91 -0.02 0.07 16 37 H 0.10 0.20 8.14 -2.38 -0.02 0.19 16 38 H 0.08 0.79 7.36 -2.38 -0.02 0.78 16 39 H 0.13 -0.43 8.02 -2.39 -0.02 -0.44 16 40 H 0.43 5.60 8.98 -74.06 -0.67 4.94 16 41 H 0.03 1.42 6.88 -2.39 -0.02 1.41 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -86.09 352.87 -1.26 -87.34 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 0.41 Total: 1.99 kcal Atomic # 6 Polarization: 41.19 SS G_CDS: 8.62 Total: 49.80 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -11.07 Total: -132.98 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -1.24 Total: -51.38 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -86.09 -1.26 -87.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980381428.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.486 kcal (2) G-P(sol) polarization free energy of solvation -86.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds