Wall clock time and date at job start Fri Apr 10 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35653 * 119.95697 * 2 1 4 4 O 1.34692 * 119.10889 * 359.97438 * 3 2 1 5 5 N 1.31850 * 121.77774 * 180.02562 * 3 2 1 6 6 C 1.32567 * 121.60575 * 359.69709 * 5 3 2 7 7 C 1.39429 * 119.70503 * 0.55877 * 6 5 3 8 8 C 1.46896 * 120.82017 * 179.73533 * 7 6 5 9 9 O 1.21666 * 120.00261 * 50.75669 * 8 7 6 10 10 N 1.34781 * 119.99711 * 230.75505 * 8 7 6 11 11 C 1.48210 * 119.96969 * 144.32711 * 10 8 7 12 12 C 1.47145 * 110.34161 * 102.46518 * 11 10 8 13 13 C 1.53801 * 111.83491 * 58.29917 * 12 11 10 14 14 N 1.43465 * 107.96016 * 281.66231 * 13 12 11 15 15 C 1.36933 * 118.94062 * 273.61696 * 14 13 12 16 16 H 1.07997 * 120.00449 * 24.64907 * 15 14 13 17 17 C 1.38814 * 119.99905 * 204.65518 * 15 14 13 18 18 N 1.31625 * 119.99903 * 34.89644 * 17 15 14 19 19 Si 1.86796 * 119.99900 * 214.89565 * 17 15 14 20 20 H 1.48503 * 109.47159 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47202 * 59.99924 * 19 17 15 22 22 H 1.48498 * 109.47229 * 299.99593 * 19 17 15 23 23 C 1.48857 * 122.11626 * 93.89225 * 14 13 12 24 24 C 1.43619 * 119.96847 * 324.30735 * 10 8 7 25 25 C 1.35022 * 119.95254 * 179.97438 * 2 1 3 26 26 O 1.21831 * 120.76960 * 0.02562 * 25 2 1 27 27 H 1.09007 * 109.46863 * 270.02719 * 1 2 3 28 28 H 1.09000 * 109.47176 * 30.02283 * 1 2 3 29 29 H 1.08998 * 109.47423 * 150.02473 * 1 2 3 30 30 H 0.96699 * 116.99363 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.14819 * 180.31360 * 6 5 3 32 32 H 1.09004 * 109.32523 * 342.20670 * 11 10 8 33 33 H 1.08992 * 109.18234 * 222.64660 * 11 10 8 34 34 H 1.08994 * 109.01048 * 297.69525 * 12 11 10 35 35 H 1.09000 * 109.00632 * 178.90622 * 12 11 10 36 36 H 1.09001 * 109.75759 * 162.04982 * 13 12 11 37 37 H 1.08994 * 109.80925 * 41.30702 * 13 12 11 38 38 H 0.97000 * 120.00194 * 0.77206 * 18 17 15 39 39 H 1.09001 * 109.47991 * 80.34799 * 23 14 13 40 40 H 1.09005 * 109.47911 * 200.38061 * 23 14 13 41 41 H 1.08996 * 108.87593 * 31.46341 * 24 10 8 42 42 H 1.09000 * 108.87329 * 150.00706 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1424 1.1753 0.0000 4 8 1.4500 2.3306 -0.0005 5 7 3.4603 1.2172 -0.0005 6 6 4.1905 0.1108 0.0049 7 6 3.5604 -1.1330 -0.0004 8 6 4.3457 -2.3745 -0.0004 9 8 5.2311 -2.5343 0.8186 10 7 4.0852 -3.3365 -0.9077 11 6 5.1941 -4.1419 -1.4719 12 6 5.2355 -5.4696 -0.8388 13 6 3.9130 -6.2328 -1.0232 14 7 2.9660 -5.7111 -0.0801 15 6 2.9361 -6.2320 1.1860 16 1 3.8164 -6.7038 1.5968 17 6 1.7741 -6.1537 1.9413 18 7 0.5999 -6.2494 1.3544 19 14 1.8769 -5.9127 3.7908 20 1 0.5064 -5.8614 4.3603 21 1 2.5829 -4.6400 4.0856 22 1 2.6231 -7.0446 4.3968 23 6 2.0110 -4.6261 -0.4354 24 6 2.7333 -3.5805 -1.3266 25 6 2.1392 -1.1699 0.0005 26 8 1.5434 -2.2326 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 1.9635 3.1500 -0.0009 31 1 5.2688 0.1726 0.0095 32 1 6.1392 -3.6284 -1.2950 33 1 5.0422 -4.2585 -2.5448 34 1 5.4301 -5.3489 0.2269 35 1 6.0449 -6.0494 -1.2825 36 1 4.0715 -7.2950 -0.8371 37 1 3.5412 -6.0878 -2.0374 38 1 0.5466 -6.3858 0.3955 39 1 1.1657 -5.0492 -0.9782 40 1 1.6541 -4.1435 0.4746 41 1 2.1785 -2.6430 -1.2910 42 1 2.7429 -3.9453 -2.3537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981738427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:08 Heat of formation + Delta-G solvation = 27.395841 kcal Electronic energy + Delta-G solvation = -29512.070440 eV Core-core repulsion = 25496.916387 eV Total energy + Delta-G solvation = -4015.154053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20077 -39.86972 -38.69036 -37.41153 -36.61064 -35.43755 -34.14322 -32.43170 -30.71048 -30.58223 -28.19170 -27.27344 -25.58499 -24.75511 -23.77674 -23.40059 -21.99502 -19.88542 -19.57489 -19.28951 -18.74399 -17.67216 -17.03401 -16.74536 -16.25062 -16.07332 -15.68427 -15.10510 -14.73836 -14.57310 -14.21868 -13.93306 -13.74344 -13.53609 -13.37335 -12.99071 -12.81960 -12.61795 -12.48661 -12.29876 -11.96600 -11.67929 -11.14205 -10.85276 -10.64234 -10.53361 -10.42974 -10.22789 -10.09040 -9.95906 -9.81583 -9.51280 -9.29891 -9.21501 -8.31575 -7.93025 -7.67010 -6.59633 -5.95905 -2.90210 0.34031 1.54671 1.65506 2.76880 3.14280 3.51721 3.61596 3.64136 3.69874 3.85305 3.90535 4.32008 4.79325 4.83454 5.05300 5.10389 5.32472 5.35612 5.43525 5.50357 5.55606 5.71652 5.73221 5.80571 5.91613 6.04029 6.20186 6.33719 6.35801 6.54474 6.59042 6.62767 6.70541 6.94848 7.04635 7.22427 7.39292 7.42745 7.53781 7.84560 8.15966 8.33779 8.62223 8.80844 9.41414 10.12938 10.54516 11.37735 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.005687 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.066236 B = 4922.600843 C = 5872.180935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.507 5.507 3 C 0.597 3.403 4 O -0.457 6.457 5 N -0.594 5.594 6 C 0.238 3.762 7 C -0.326 4.326 8 C 0.604 3.396 9 O -0.524 6.524 10 N -0.598 5.598 11 C 0.142 3.858 12 C -0.171 4.171 13 C 0.167 3.833 14 N -0.594 5.594 15 C -0.356 4.356 16 H 0.050 0.950 17 C -0.016 4.016 18 N -0.904 5.904 19 Si 1.050 2.950 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.294 1.294 23 C 0.153 3.847 24 C 0.068 3.932 25 C 0.520 3.480 26 O -0.453 6.453 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.441 0.559 31 H 0.178 0.822 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.019 0.981 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 19.733 -8.517 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.236 5.236 3 C 0.298 3.702 4 O -0.255 6.255 5 N -0.336 5.336 6 C 0.094 3.906 7 C -0.338 4.338 8 C 0.391 3.609 9 O -0.400 6.400 10 N -0.331 5.331 11 C 0.020 3.980 12 C -0.212 4.212 13 C 0.038 3.962 14 N -0.317 5.317 15 C -0.485 4.485 16 H 0.068 0.932 17 C -0.219 4.219 18 N -0.543 5.543 19 Si 0.881 3.119 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.221 1.221 23 C 0.028 3.972 24 C -0.055 4.055 25 C 0.321 3.679 26 O -0.328 6.328 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.302 0.698 31 H 0.195 0.805 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.934 19.470 -6.705 20.614 hybrid contribution 0.932 -0.430 -1.306 1.661 sum 1.866 19.040 -8.011 20.741 Atomic orbital electron populations 1.22242 0.75771 1.05598 1.04934 1.46537 1.11030 1.04927 1.61071 1.20294 0.85192 0.81451 0.83284 1.84159 1.39191 1.14770 1.87343 1.68384 1.00675 1.31740 1.32804 1.22693 1.00062 0.84748 0.83071 1.21785 0.92678 0.97170 1.22162 1.17073 0.82232 0.81897 0.79722 1.90763 1.35543 1.80009 1.33637 1.46946 1.07578 1.34225 1.44302 1.20508 0.88871 0.92568 0.96053 1.21888 1.00542 0.96164 1.02654 1.20203 0.88774 0.95370 0.91843 1.43793 1.39879 1.37890 1.10102 1.19769 0.97818 1.39853 0.91063 0.93244 1.25538 0.91857 0.99169 1.05310 1.70814 1.25157 1.45844 1.12497 0.83738 0.75151 0.76517 0.76527 1.21395 1.22341 1.22101 1.22132 0.89991 0.86606 0.98519 1.23182 0.82177 1.03492 0.96664 1.17153 0.88424 0.81998 0.80336 1.91064 1.70580 1.24644 1.46551 0.89845 0.88903 0.87928 0.69756 0.80474 0.91715 0.92305 0.90829 0.93227 0.93952 0.95520 0.92300 0.96368 0.89684 0.86659 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 10.16 59.85 0.61 1.12 16 2 N -0.51 -6.06 2.99 -128.28 -0.38 -6.45 16 3 C 0.60 5.68 8.60 -88.68 -0.76 4.92 16 4 O -0.46 -2.35 12.19 -15.83 -0.19 -2.54 16 5 N -0.59 -6.22 10.31 -13.97 -0.14 -6.36 16 6 C 0.24 3.03 10.99 -16.79 -0.18 2.84 16 7 C -0.33 -5.46 5.58 -104.44 -0.58 -6.04 16 8 C 0.60 12.48 6.62 -12.75 -0.08 12.39 16 9 O -0.52 -12.37 17.26 5.22 0.09 -12.28 16 10 N -0.60 -12.12 2.46 -177.90 -0.44 -12.56 16 11 C 0.14 2.58 5.58 -5.91 -0.03 2.54 16 12 C -0.17 -3.50 5.64 -29.13 -0.16 -3.66 16 13 C 0.17 3.82 5.63 -5.23 -0.03 3.79 16 14 N -0.59 -16.08 2.40 -171.78 -0.41 -16.50 16 15 C -0.36 -10.85 9.05 -15.06 -0.14 -10.98 16 16 H 0.05 1.56 8.02 -52.49 -0.42 1.13 16 17 C -0.02 -0.48 4.35 -17.43 -0.08 -0.55 16 18 N -0.90 -28.66 12.83 55.49 0.71 -27.94 16 19 Si 1.05 28.04 30.03 -169.99 -5.11 22.94 16 20 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 23 C 0.15 3.90 4.49 -1.56 -0.01 3.89 16 24 C 0.07 1.40 4.69 -4.39 -0.02 1.38 16 25 C 0.52 8.57 6.47 -14.64 -0.09 8.47 16 26 O -0.45 -9.09 9.26 5.07 0.05 -9.05 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 0.57 7.34 -51.93 -0.38 0.19 16 29 H 0.10 1.05 7.45 -51.93 -0.39 0.67 16 30 H 0.44 0.15 9.08 45.56 0.41 0.56 16 31 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.06 1.10 7.77 -51.93 -0.40 0.70 16 33 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 34 H 0.07 1.81 7.91 -51.93 -0.41 1.40 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 1.00 8.02 -51.93 -0.42 0.58 16 37 H 0.03 0.56 7.59 -51.93 -0.39 0.17 16 38 H 0.27 8.51 6.83 -40.82 -0.28 8.23 16 39 H 0.02 0.49 7.33 -51.93 -0.38 0.11 16 40 H 0.09 2.47 5.07 -51.93 -0.26 2.21 16 41 H 0.12 2.26 3.31 -58.52 -0.19 2.06 16 42 H 0.04 0.69 7.72 -51.93 -0.40 0.29 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -39.66 334.73 -6.75 -46.41 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -4.40 Total: -0.84 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: -1.57 Total: 20.13 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.67 Total: -69.81 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.06 Total: -23.87 kcal Atomic # 14 Polarization: 28.04 SS G_CDS: -5.11 Total: 22.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -39.66 -6.75 -46.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981738427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.803 kcal (2) G-P(sol) polarization free energy of solvation -39.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds