Wall clock time and date at job start Fri Apr 10 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35653 * 119.95697 * 2 1 4 4 O 1.34692 * 119.10889 * 359.97438 * 3 2 1 5 5 N 1.31850 * 121.77774 * 180.02562 * 3 2 1 6 6 C 1.32567 * 121.60575 * 359.69709 * 5 3 2 7 7 C 1.39429 * 119.70503 * 0.55877 * 6 5 3 8 8 C 1.46896 * 120.82017 * 179.73533 * 7 6 5 9 9 O 1.21666 * 120.00261 * 50.75669 * 8 7 6 10 10 N 1.34781 * 119.99711 * 230.75505 * 8 7 6 11 11 C 1.48210 * 119.96969 * 144.32711 * 10 8 7 12 12 C 1.47145 * 110.34161 * 102.46518 * 11 10 8 13 13 C 1.53801 * 111.83491 * 58.29917 * 12 11 10 14 14 N 1.43465 * 107.96016 * 281.66231 * 13 12 11 15 15 C 1.36933 * 118.94062 * 273.61696 * 14 13 12 16 16 H 1.07997 * 120.00449 * 24.64907 * 15 14 13 17 17 C 1.38814 * 119.99905 * 204.65518 * 15 14 13 18 18 N 1.31625 * 119.99903 * 34.89644 * 17 15 14 19 19 Si 1.86796 * 119.99900 * 214.89565 * 17 15 14 20 20 H 1.48503 * 109.47159 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47202 * 59.99924 * 19 17 15 22 22 H 1.48498 * 109.47229 * 299.99593 * 19 17 15 23 23 C 1.48857 * 122.11626 * 93.89225 * 14 13 12 24 24 C 1.43619 * 119.96847 * 324.30735 * 10 8 7 25 25 C 1.35022 * 119.95254 * 179.97438 * 2 1 3 26 26 O 1.21831 * 120.76960 * 0.02562 * 25 2 1 27 27 H 1.09007 * 109.46863 * 270.02719 * 1 2 3 28 28 H 1.09000 * 109.47176 * 30.02283 * 1 2 3 29 29 H 1.08998 * 109.47423 * 150.02473 * 1 2 3 30 30 H 0.96699 * 116.99363 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.14819 * 180.31360 * 6 5 3 32 32 H 1.09004 * 109.32523 * 342.20670 * 11 10 8 33 33 H 1.08992 * 109.18234 * 222.64660 * 11 10 8 34 34 H 1.08994 * 109.01048 * 297.69525 * 12 11 10 35 35 H 1.09000 * 109.00632 * 178.90622 * 12 11 10 36 36 H 1.09001 * 109.75759 * 162.04982 * 13 12 11 37 37 H 1.08994 * 109.80925 * 41.30702 * 13 12 11 38 38 H 0.97000 * 120.00194 * 0.77206 * 18 17 15 39 39 H 1.09001 * 109.47991 * 80.34799 * 23 14 13 40 40 H 1.09005 * 109.47911 * 200.38061 * 23 14 13 41 41 H 1.08996 * 108.87593 * 31.46341 * 24 10 8 42 42 H 1.09000 * 108.87329 * 150.00706 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1424 1.1753 0.0000 4 8 1.4500 2.3306 -0.0005 5 7 3.4603 1.2172 -0.0005 6 6 4.1905 0.1108 0.0049 7 6 3.5604 -1.1330 -0.0004 8 6 4.3457 -2.3745 -0.0004 9 8 5.2311 -2.5343 0.8186 10 7 4.0852 -3.3365 -0.9077 11 6 5.1941 -4.1419 -1.4719 12 6 5.2355 -5.4696 -0.8388 13 6 3.9130 -6.2328 -1.0232 14 7 2.9660 -5.7111 -0.0801 15 6 2.9361 -6.2320 1.1860 16 1 3.8164 -6.7038 1.5968 17 6 1.7741 -6.1537 1.9413 18 7 0.5999 -6.2494 1.3544 19 14 1.8769 -5.9127 3.7908 20 1 0.5064 -5.8614 4.3603 21 1 2.5829 -4.6400 4.0856 22 1 2.6231 -7.0446 4.3968 23 6 2.0110 -4.6261 -0.4354 24 6 2.7333 -3.5805 -1.3266 25 6 2.1392 -1.1699 0.0005 26 8 1.5434 -2.2326 0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 1.9635 3.1500 -0.0009 31 1 5.2688 0.1726 0.0095 32 1 6.1392 -3.6284 -1.2950 33 1 5.0422 -4.2585 -2.5448 34 1 5.4301 -5.3489 0.2269 35 1 6.0449 -6.0494 -1.2825 36 1 4.0715 -7.2950 -0.8371 37 1 3.5412 -6.0878 -2.0374 38 1 0.5466 -6.3858 0.3955 39 1 1.1657 -5.0492 -0.9782 40 1 1.6541 -4.1435 0.4746 41 1 2.1785 -2.6430 -1.2910 42 1 2.7429 -3.9453 -2.3537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981738427.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:07 Heat of formation + Delta-G solvation = -5.873412 kcal Electronic energy + Delta-G solvation = -29513.513103 eV Core-core repulsion = 25496.916387 eV Total energy + Delta-G solvation = -4016.596716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.25626 -41.15638 -39.85506 -38.80840 -37.90150 -36.45943 -36.03572 -34.17783 -32.65772 -31.86440 -29.10826 -29.01971 -27.19141 -26.03946 -25.45880 -24.82174 -23.51790 -21.56126 -20.98212 -20.27626 -19.89355 -19.37992 -18.64292 -17.99019 -17.45499 -17.22223 -17.07641 -16.37815 -16.17005 -16.09268 -15.78346 -15.56023 -15.34491 -14.87156 -14.62681 -14.45753 -14.37289 -14.04672 -13.70578 -13.64044 -13.45277 -13.25455 -12.86101 -12.62853 -12.55164 -12.11018 -12.01103 -11.89431 -11.82006 -11.66598 -11.38172 -11.35732 -10.93743 -10.65905 -10.25191 -9.64568 -9.18423 -8.80705 -8.33166 -5.26451 -0.63474 0.58404 0.67943 1.42691 1.43029 1.53068 1.71535 2.18027 2.29996 2.41558 2.58366 3.10366 3.14918 3.28204 3.64813 3.77760 4.02511 4.12145 4.21181 4.28996 4.31811 4.34170 4.45295 4.49125 4.59522 4.71467 4.74527 4.76851 4.85743 4.94652 5.10121 5.13414 5.18011 5.22491 5.44346 5.49769 5.89122 5.94320 6.02866 6.38459 6.55384 6.60281 6.65562 7.11168 7.17492 7.89639 8.28651 8.95267 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.005687 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.066236 B = 4922.600843 C = 5872.180935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.508 5.508 3 C 0.618 3.382 4 O -0.432 6.432 5 N -0.584 5.584 6 C 0.279 3.721 7 C -0.380 4.380 8 C 0.601 3.399 9 O -0.569 6.569 10 N -0.605 5.605 11 C 0.135 3.865 12 C -0.155 4.155 13 C 0.160 3.840 14 N -0.610 5.610 15 C -0.362 4.362 16 H 0.030 0.970 17 C -0.063 4.063 18 N -0.922 5.922 19 Si 1.094 2.906 20 H -0.281 1.281 21 H -0.302 1.302 22 H -0.273 1.273 23 C 0.164 3.836 24 C 0.083 3.917 25 C 0.521 3.479 26 O -0.506 6.506 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.086 0.914 30 H 0.466 0.534 31 H 0.199 0.801 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.024 0.976 35 H 0.085 0.915 36 H 0.028 0.972 37 H 0.051 0.949 38 H 0.253 0.747 39 H -0.003 1.003 40 H 0.046 0.954 41 H 0.135 0.865 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 23.082 -9.604 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.235 5.235 3 C 0.320 3.680 4 O -0.232 6.232 5 N -0.326 5.326 6 C 0.131 3.869 7 C -0.391 4.391 8 C 0.390 3.610 9 O -0.448 6.448 10 N -0.337 5.337 11 C 0.014 3.986 12 C -0.196 4.196 13 C 0.033 3.967 14 N -0.333 5.333 15 C -0.492 4.492 16 H 0.047 0.953 17 C -0.261 4.261 18 N -0.563 5.563 19 Si 0.921 3.079 20 H -0.206 1.206 21 H -0.231 1.231 22 H -0.198 1.198 23 C 0.039 3.961 24 C -0.041 4.041 25 C 0.324 3.676 26 O -0.386 6.386 27 H 0.104 0.896 28 H 0.149 0.851 29 H 0.105 0.895 30 H 0.333 0.667 31 H 0.215 0.785 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.042 0.958 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.065 0.935 41 H 0.151 0.849 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.386 22.917 -7.833 24.258 hybrid contribution 0.776 -1.235 -0.993 1.765 sum 2.162 21.682 -8.826 23.509 Atomic orbital electron populations 1.22451 0.74054 1.06711 1.05474 1.46361 1.12091 1.04747 1.60261 1.20418 0.84826 0.82117 0.80661 1.84201 1.38870 1.14438 1.85725 1.68578 1.00948 1.30158 1.32896 1.23012 1.01125 0.83777 0.78963 1.21447 0.92782 0.96777 1.28144 1.17669 0.81786 0.82927 0.78595 1.90720 1.37867 1.81108 1.35124 1.47128 1.07679 1.34692 1.44229 1.20720 0.89206 0.90938 0.97759 1.21668 0.99905 0.97983 1.00035 1.20394 0.89252 0.94874 0.92156 1.44023 1.40747 1.38713 1.09865 1.19878 0.96825 1.39566 0.92935 0.95257 1.26682 0.91589 0.99167 1.08686 1.70915 1.25631 1.48027 1.11679 0.83111 0.75538 0.76616 0.72630 1.20628 1.23054 1.19845 1.21941 0.89745 0.86928 0.97535 1.22952 0.82369 1.02896 0.95877 1.17099 0.88445 0.82530 0.79519 1.91029 1.71423 1.26662 1.49437 0.89616 0.85105 0.89498 0.66742 0.78461 0.90405 0.88566 0.95751 0.89656 0.95337 0.93100 0.93739 0.98545 0.93545 0.84938 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.88 10.16 127.77 1.30 2.18 16 2 N -0.51 -11.12 2.99 -789.40 -2.36 -13.48 16 3 C 0.62 9.39 8.60 179.67 1.54 10.93 16 4 O -0.43 -2.17 12.19 -79.57 -0.97 -3.14 16 5 N -0.58 -10.02 10.31 -311.73 -3.21 -13.23 16 6 C 0.28 6.41 10.99 84.87 0.93 7.34 16 7 C -0.38 -12.48 5.58 -19.75 -0.11 -12.59 16 8 C 0.60 25.10 6.62 86.51 0.57 25.67 16 9 O -0.57 -27.57 17.26 -4.24 -0.07 -27.64 16 10 N -0.61 -24.53 2.46 -834.98 -2.05 -26.58 16 11 C 0.13 4.72 5.58 84.23 0.47 5.19 16 12 C -0.15 -6.30 5.64 29.04 0.16 -6.14 16 13 C 0.16 7.45 5.63 87.21 0.49 7.94 16 14 N -0.61 -34.31 2.40 -697.38 -1.67 -35.98 16 15 C -0.36 -23.06 9.05 84.03 0.76 -22.30 16 16 H 0.03 1.95 8.02 -2.91 -0.02 1.92 16 17 C -0.06 -3.99 4.35 84.86 0.37 -3.62 16 18 N -0.92 -60.79 12.83 21.65 0.28 -60.51 16 19 Si 1.09 58.59 30.03 68.60 2.06 60.65 16 20 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 21 H -0.30 -16.41 7.11 99.48 0.71 -15.70 16 22 H -0.27 -13.54 7.11 99.48 0.71 -12.84 16 23 C 0.16 8.73 4.49 86.68 0.39 9.12 16 24 C 0.08 3.42 4.69 87.67 0.41 3.84 16 25 C 0.52 17.08 6.47 85.18 0.55 17.63 16 26 O -0.51 -21.06 9.26 -4.77 -0.04 -21.10 16 27 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.13 1.11 7.34 -2.39 -0.02 1.09 16 29 H 0.09 1.77 7.45 -2.39 -0.02 1.75 16 30 H 0.47 -2.43 9.08 -74.06 -0.67 -3.11 16 31 H 0.20 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.08 2.54 7.77 -2.38 -0.02 2.52 16 33 H 0.10 2.68 8.05 -2.39 -0.02 2.66 16 34 H 0.02 1.21 7.91 -2.39 -0.02 1.19 16 35 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.03 1.37 8.02 -2.39 -0.02 1.35 16 37 H 0.05 2.11 7.59 -2.39 -0.02 2.09 16 38 H 0.25 16.98 6.83 -92.71 -0.63 16.35 16 39 H 0.00 -0.18 7.33 -2.39 -0.02 -0.20 16 40 H 0.05 2.85 5.07 -2.38 -0.01 2.84 16 41 H 0.13 5.25 3.31 -106.68 -0.35 4.90 16 42 H 0.06 2.06 7.72 -2.39 -0.02 2.04 16 Total: -1.00 -93.01 334.73 0.00 -93.01 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 0.20 Total: 2.80 kcal Atomic # 6 Polarization: 37.35 SS G_CDS: 7.84 Total: 45.20 kcal Atomic # 7 Polarization: -140.76 SS G_CDS: -9.02 Total: -149.78 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -1.09 Total: -51.88 kcal Atomic # 14 Polarization: 58.59 SS G_CDS: 2.06 Total: 60.65 kcal Total: -93.01 0.00 -93.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981738427.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.139 kcal (2) G-P(sol) polarization free energy of solvation -93.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds