Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.99838 * 2 1 4 4 C 1.54335 * 109.78215 * 121.16597 * 2 1 3 5 5 H 1.09000 * 110.67030 * 215.88256 * 4 2 1 6 6 N 1.46505 * 110.84855 * 339.02649 * 4 2 1 7 7 C 1.36935 * 120.00312 * 200.14283 * 6 4 2 8 8 H 1.08007 * 119.99656 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00132 * 180.02562 * 7 6 4 10 10 N 1.31619 * 119.99986 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00002 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47125 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47356 * 119.99576 * 11 9 7 14 14 H 1.48497 * 109.47221 * 239.99698 * 11 9 7 15 15 C 1.55160 * 103.02232 * 97.49475 * 4 2 1 16 16 C 1.54912 * 101.57860 * 35.31196 * 15 4 2 17 17 N 1.47022 * 109.88393 * 238.90385 * 2 1 3 18 18 C 1.34784 * 125.64460 * 59.55873 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.44612 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.71653 * 18 17 2 21 21 N 1.46506 * 109.46874 * 180.02562 * 20 18 17 22 22 C 1.36162 * 119.84831 * 269.72662 * 21 20 18 23 23 C 1.35552 * 119.25340 * 179.77474 * 22 21 20 24 24 C 1.40733 * 119.00040 * 0.49038 * 23 22 21 25 25 O 1.35160 * 120.16717 * 179.77015 * 24 23 22 26 26 N 1.32427 * 119.66979 * 359.75498 * 24 23 22 27 27 C 1.33274 * 120.73008 * 359.97438 * 26 24 23 28 28 O 1.21973 * 119.47627 * 180.02562 * 27 26 24 29 29 H 1.08999 * 109.47118 * 179.64291 * 1 2 3 30 30 H 1.09001 * 109.46869 * 299.63925 * 1 2 3 31 31 H 1.08999 * 109.46976 * 59.63804 * 1 2 3 32 32 H 0.97009 * 119.99688 * 20.15205 * 6 4 2 33 33 H 0.97000 * 119.99916 * 180.02562 * 10 9 7 34 34 H 1.08995 * 111.00287 * 277.23637 * 15 4 2 35 35 H 1.09002 * 111.03497 * 153.39561 * 15 4 2 36 36 H 1.08998 * 110.36455 * 204.15447 * 16 15 4 37 37 H 1.08991 * 110.46486 * 81.87299 * 16 15 4 38 38 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 39 39 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 40 40 H 1.07995 * 120.37752 * 359.97438 * 22 21 20 41 41 H 1.07997 * 120.49530 * 180.24387 * 23 22 21 42 42 H 0.96697 * 114.00147 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7516 1.2427 5 1 2.9601 -0.2827 1.6225 6 7 1.0258 -0.8101 2.2863 7 6 1.3839 -1.0488 3.5863 8 1 2.4231 -1.1935 3.8423 9 6 0.4112 -1.1047 4.5750 10 7 -0.8552 -0.9278 4.2631 11 14 0.8998 -1.4296 6.3485 12 1 2.3734 -1.5918 6.4342 13 1 0.4771 -0.2858 7.1959 14 1 0.2372 -2.6702 6.8252 15 6 2.3562 -2.1698 0.6914 16 6 2.8614 -1.8465 -0.7369 17 7 2.0300 -0.7141 -1.1839 18 6 1.7753 -0.3844 -2.4657 19 8 1.0706 0.5698 -2.7179 20 6 2.3613 -1.2053 -3.5855 21 7 1.9402 -0.6464 -4.8726 22 6 0.7938 -1.0874 -5.4604 23 6 0.4132 -0.5588 -6.6491 24 6 1.2211 0.4256 -7.2481 25 8 0.8664 0.9653 -8.4354 26 7 2.3306 0.8206 -6.6425 27 6 2.6907 0.2967 -5.4712 28 8 3.7170 0.6777 -4.9334 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 0.0924 -0.6798 2.0564 33 1 -1.5348 -0.9666 4.9541 34 1 1.4522 -2.7778 0.6579 35 1 3.1327 -2.6598 1.2789 36 1 2.7178 -2.7048 -1.3933 37 1 3.9125 -1.5594 -0.7134 38 1 3.4491 -1.1856 -3.5197 39 1 2.0109 -2.2342 -3.5036 40 1 0.1929 -1.8474 -4.9834 41 1 -0.4944 -0.8909 -7.1312 42 1 1.4844 1.6323 -8.7646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986502263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = -62.327536 kcal Electronic energy + Delta-G solvation = -27323.879127 eV Core-core repulsion = 23304.834376 eV Total energy + Delta-G solvation = -4019.044751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.91935 -41.26473 -39.74152 -38.88736 -37.79952 -35.96432 -35.59607 -33.56040 -32.37338 -32.09707 -30.95820 -28.92352 -26.79644 -25.88163 -25.38707 -24.53405 -23.70571 -21.30382 -20.77210 -20.14274 -19.44891 -19.12536 -18.60563 -18.23086 -17.20395 -17.11599 -16.82806 -16.43739 -16.35773 -15.84644 -15.60632 -15.48718 -15.13131 -14.83606 -14.69693 -14.57222 -14.29244 -13.93141 -13.64971 -13.46066 -13.17472 -13.10309 -13.01006 -12.89265 -12.85612 -12.56350 -12.06351 -12.03931 -12.01100 -11.61891 -11.53687 -11.39594 -10.97709 -10.93130 -10.90058 -9.74593 -9.68192 -9.00651 -7.93859 -5.22443 -0.31691 0.67376 1.19488 1.44538 1.49435 1.50706 1.59850 1.91245 2.26790 2.57477 2.68721 3.27919 3.30428 3.41517 3.62611 3.75072 3.78049 3.83022 3.95094 4.09517 4.16523 4.19441 4.36254 4.42619 4.44295 4.55197 4.58558 4.65275 4.78974 4.86257 5.04389 5.17010 5.22073 5.26845 5.29733 5.33476 5.50303 5.56533 6.15854 6.28289 6.45776 6.65743 6.97803 7.03569 7.35885 8.09129 8.32731 9.29923 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034761 B = 0.002504 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.300512 B =11181.356450 C =11492.972804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.135 3.865 3 H 0.052 0.948 4 C 0.163 3.837 5 H 0.060 0.940 6 N -0.732 5.732 7 C -0.235 4.235 8 H 0.080 0.920 9 C -0.075 4.075 10 N -0.970 5.970 11 Si 0.971 3.029 12 H -0.264 1.264 13 H -0.299 1.299 14 H -0.294 1.294 15 C -0.141 4.141 16 C 0.098 3.902 17 N -0.602 5.602 18 C 0.510 3.490 19 O -0.579 6.579 20 C 0.086 3.914 21 N -0.513 5.513 22 C 0.215 3.785 23 C -0.284 4.284 24 C 0.456 3.544 25 O -0.440 6.440 26 N -0.657 5.657 27 C 0.650 3.350 28 O -0.591 6.591 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.381 0.619 33 H 0.250 0.750 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.134 0.866 39 H 0.185 0.815 40 H 0.234 0.766 41 H 0.201 0.799 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.598 -7.910 -24.211 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.070 0.930 4 C 0.053 3.947 5 H 0.078 0.922 6 N -0.375 5.375 7 C -0.367 4.367 8 H 0.098 0.902 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.800 3.200 12 H -0.188 1.188 13 H -0.227 1.227 14 H -0.221 1.221 15 C -0.182 4.182 16 C -0.023 4.023 17 N -0.336 5.336 18 C 0.298 3.702 19 O -0.459 6.459 20 C -0.039 4.039 21 N -0.228 5.228 22 C 0.082 3.918 23 C -0.309 4.309 24 C 0.257 3.743 25 O -0.236 6.236 26 N -0.416 5.416 27 C 0.352 3.648 28 O -0.470 6.470 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.217 0.783 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.106 0.894 38 H 0.152 0.848 39 H 0.203 0.797 40 H 0.250 0.750 41 H 0.218 0.782 42 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 4.121 -6.927 -24.149 25.459 hybrid contribution -0.374 0.536 1.421 1.564 sum 3.748 -6.391 -22.728 23.905 Atomic orbital electron populations 1.21781 0.95153 1.01854 1.01075 1.21551 0.94709 0.95275 0.85470 0.92953 1.21383 0.91819 0.94761 0.86698 0.92248 1.42838 1.05691 1.85552 1.03414 1.19658 0.93212 1.38680 0.85172 0.90195 1.25517 0.95417 1.03849 1.01939 1.69816 1.00230 1.58785 1.33238 0.85110 0.77901 0.76518 0.80432 1.18829 1.22715 1.22143 1.23333 1.01787 0.98089 0.94997 1.22691 0.94935 0.88630 0.96046 1.48555 1.49915 1.31140 1.03947 1.20961 0.80731 0.85196 0.83282 1.90722 1.40649 1.30824 1.83701 1.22046 1.04345 0.99487 0.78022 1.45941 1.22049 1.34883 1.19897 1.23264 0.83716 0.93987 0.90876 1.21089 1.06842 1.03932 0.99056 1.20833 0.85662 0.84333 0.83439 1.84985 1.52067 1.56294 1.30294 1.69489 1.22385 1.36511 1.13239 1.17459 0.84579 0.79265 0.83463 1.90947 1.27124 1.63255 1.65675 0.92317 0.92901 0.92618 0.78266 0.94109 0.91592 0.89373 0.86219 0.89353 0.84826 0.79749 0.74953 0.78181 0.71101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 7.93 71.98 0.57 -4.56 16 2 C 0.13 4.59 3.49 45.34 0.16 4.75 16 3 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 4 C 0.16 5.88 3.45 46.18 0.16 6.04 16 5 H 0.06 2.18 8.12 -2.39 -0.02 2.16 16 6 N -0.73 -34.48 5.02 -317.29 -1.59 -36.07 16 7 C -0.24 -12.30 9.98 84.03 0.84 -11.46 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 9 C -0.08 -4.14 5.50 84.86 0.47 -3.67 16 10 N -0.97 -57.64 13.06 21.65 0.28 -57.35 16 11 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 12 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 13 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 14 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 15 C -0.14 -3.80 6.77 31.99 0.22 -3.58 16 16 C 0.10 1.81 6.69 86.86 0.58 2.39 16 17 N -0.60 -15.68 3.08 -788.03 -2.43 -18.11 16 18 C 0.51 13.45 7.70 87.65 0.68 14.12 16 19 O -0.58 -20.84 15.31 -3.01 -0.05 -20.89 16 20 C 0.09 1.37 4.83 85.63 0.41 1.78 16 21 N -0.51 -10.04 2.08 -661.76 -1.38 -11.41 16 22 C 0.22 2.22 10.40 83.40 0.87 3.08 16 23 C -0.28 -3.07 10.03 22.26 0.22 -2.84 16 24 C 0.46 7.96 7.91 85.21 0.67 8.63 16 25 O -0.44 -5.20 13.55 -84.39 -1.14 -6.34 16 26 N -0.66 -17.63 10.40 -438.82 -4.56 -22.19 16 27 C 0.65 19.53 8.34 179.58 1.50 21.03 16 28 O -0.59 -22.99 16.72 -5.23 -0.09 -23.07 16 29 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 30 H 0.05 2.21 6.73 -2.39 -0.02 2.19 16 31 H 0.05 2.05 6.73 -2.39 -0.02 2.03 16 32 H 0.38 19.35 4.94 -92.70 -0.46 18.89 16 33 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.12 1.10 7.48 -2.39 -0.02 1.09 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.13 2.20 7.38 -2.38 -0.02 2.19 16 39 H 0.19 0.60 7.74 -2.39 -0.02 0.58 16 40 H 0.23 -0.14 8.06 -2.91 -0.02 -0.16 16 41 H 0.20 0.68 8.06 -2.91 -0.02 0.66 16 42 H 0.43 2.53 8.98 -74.06 -0.66 1.87 16 Total: -1.00 -89.51 354.10 -1.63 -91.14 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.04 Total: 21.93 kcal Atomic # 6 Polarization: 28.37 SS G_CDS: 7.34 Total: 35.71 kcal Atomic # 7 Polarization: -135.46 SS G_CDS: -9.68 Total: -145.14 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -1.28 Total: -50.30 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -89.51 -1.63 -91.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986502263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.809 kcal (2) G-P(sol) polarization free energy of solvation -89.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds