Wall clock time and date at job start Fri Apr 10 2020 18:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46971 * 60.00379 * 11 9 7 13 13 H 1.48499 * 109.47124 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46925 * 300.00310 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34774 * 125.64831 * 61.61497 * 17 2 1 19 19 O 1.21288 * 119.99873 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00024 * 180.02562 * 18 17 2 21 21 N 1.46503 * 109.47214 * 180.02562 * 20 18 17 22 22 C 1.36164 * 119.84988 * 269.72351 * 21 20 18 23 23 C 1.35544 * 119.25914 * 179.77071 * 22 21 20 24 24 C 1.40743 * 118.99418 * 0.49981 * 23 22 21 25 25 O 1.35157 * 120.16291 * 179.72803 * 24 23 22 26 26 N 1.32425 * 119.66974 * 359.74479 * 24 23 22 27 27 C 1.33269 * 120.72980 * 0.02562 * 26 24 23 28 28 O 1.21979 * 119.47256 * 179.97438 * 27 26 24 29 29 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 30 30 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 31 31 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 32 32 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 33 33 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 34 34 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 35 35 H 1.09000 * 111.01035 * 206.42671 * 15 4 2 36 36 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 37 37 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 38 38 H 1.08999 * 109.46936 * 300.00137 * 20 18 17 39 39 H 1.08993 * 109.47167 * 60.00346 * 20 18 17 40 40 H 1.08007 * 120.37038 * 0.02594 * 22 21 20 41 41 H 1.07994 * 120.50396 * 180.24708 * 23 22 21 42 42 H 0.96700 * 114.00589 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 3.1957 1.9320 4.2644 11 14 2.8415 0.1774 6.3801 12 1 3.7724 -0.9661 6.5562 13 1 3.2831 1.3114 7.2312 14 1 1.4709 -0.2343 6.7768 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8076 -0.3652 -2.4652 19 8 1.1439 0.6178 -2.7189 20 6 2.3835 -1.1947 -3.5838 21 7 2.0026 -0.6096 -4.8718 22 6 0.8517 -1.0055 -5.4823 23 6 0.5086 -0.4529 -6.6714 24 6 1.3592 0.5091 -7.2474 25 8 1.0428 1.0714 -8.4350 26 7 2.4714 0.8603 -6.6202 27 6 2.7947 0.3125 -5.4491 28 8 3.8250 0.6525 -4.8915 29 1 -0.3633 0.4979 0.8990 30 1 -0.3633 -1.0275 -0.0183 31 1 -0.3634 0.5296 -0.8807 32 1 2.7188 1.1016 2.0480 33 1 3.4616 2.5588 4.9552 34 1 4.1655 -0.8679 0.6615 35 1 3.4853 -2.4093 1.2828 36 1 3.6716 -2.0356 -1.3896 37 1 2.1903 -2.7735 -0.7093 38 1 3.4701 -1.2128 -3.5005 39 1 1.9971 -2.2118 -3.5180 40 1 0.2173 -1.7487 -5.0221 41 1 -0.4017 -0.7492 -7.1712 42 1 1.6886 1.7195 -8.7480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986502265.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:14 Heat of formation + Delta-G solvation = -70.475158 kcal Electronic energy + Delta-G solvation = -27235.244181 eV Core-core repulsion = 23215.846123 eV Total energy + Delta-G solvation = -4019.398058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.92169 -41.21233 -39.72627 -38.82394 -37.80759 -35.94526 -35.60432 -33.50436 -32.46505 -32.17094 -31.05165 -28.95877 -26.85517 -25.83997 -24.94507 -24.54582 -23.59810 -21.71841 -20.77814 -20.41323 -19.19668 -19.12217 -18.57166 -18.19101 -17.43309 -17.00969 -16.84484 -16.50818 -16.21555 -15.59031 -15.57760 -15.44966 -15.08448 -14.85848 -14.76109 -14.58512 -14.30025 -14.03759 -13.70870 -13.43865 -13.21941 -13.11876 -13.03841 -12.89836 -12.64463 -12.52536 -12.21531 -12.10649 -12.05096 -11.73008 -11.55692 -11.41493 -10.97992 -10.96716 -10.86451 -9.73879 -9.68012 -9.03990 -7.94362 -5.25019 -0.30904 0.67530 1.19342 1.43727 1.48866 1.51986 1.57949 1.92022 2.27010 2.57018 2.68622 3.28098 3.30709 3.41066 3.62450 3.73767 3.77283 3.83300 4.01434 4.09816 4.17165 4.19817 4.35971 4.42298 4.44546 4.51549 4.58017 4.66454 4.76157 4.94032 5.05209 5.18098 5.22442 5.25481 5.30258 5.33080 5.46396 5.54526 6.15104 6.25268 6.46298 6.65666 6.98019 7.03812 7.31173 8.03854 8.27043 9.29204 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.002494 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.776912 B =11223.365042 C =11278.151304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.131 3.869 3 H 0.031 0.969 4 C 0.171 3.829 5 H 0.081 0.919 6 N -0.732 5.732 7 C -0.236 4.236 8 H 0.088 0.912 9 C -0.080 4.080 10 N -0.975 5.975 11 Si 0.976 3.024 12 H -0.274 1.274 13 H -0.303 1.303 14 H -0.275 1.275 15 C -0.153 4.153 16 C 0.101 3.899 17 N -0.602 5.602 18 C 0.509 3.491 19 O -0.581 6.581 20 C 0.087 3.913 21 N -0.513 5.513 22 C 0.217 3.783 23 C -0.284 4.284 24 C 0.455 3.545 25 O -0.440 6.440 26 N -0.659 5.659 27 C 0.649 3.351 28 O -0.594 6.594 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.368 0.632 33 H 0.249 0.751 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.192 0.808 40 H 0.239 0.761 41 H 0.203 0.797 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 -16.507 -23.970 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 H 0.049 0.951 4 C 0.061 3.939 5 H 0.099 0.901 6 N -0.371 5.371 7 C -0.367 4.367 8 H 0.106 0.894 9 C -0.271 4.271 10 N -0.625 5.625 11 Si 0.804 3.196 12 H -0.200 1.200 13 H -0.230 1.230 14 H -0.201 1.201 15 C -0.194 4.194 16 C -0.021 4.021 17 N -0.336 5.336 18 C 0.297 3.703 19 O -0.461 6.461 20 C -0.038 4.038 21 N -0.228 5.228 22 C 0.083 3.917 23 C -0.309 4.309 24 C 0.256 3.744 25 O -0.237 6.237 26 N -0.418 5.418 27 C 0.351 3.649 28 O -0.473 6.473 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.199 0.801 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.209 0.791 40 H 0.256 0.744 41 H 0.220 0.780 42 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -8.208 -15.625 -23.879 29.694 hybrid contribution 0.585 1.279 1.305 1.919 sum -7.623 -14.346 -22.574 27.812 Atomic orbital electron populations 1.21898 0.93606 1.02926 1.01367 1.21679 0.95302 0.94982 0.85476 0.95117 1.21478 0.95191 0.90974 0.86209 0.90065 1.42577 1.79675 1.12146 1.02657 1.19626 1.36117 0.97131 0.83861 0.89446 1.25636 1.03006 0.96066 1.02438 1.69845 1.53397 1.05998 1.33281 0.85181 0.78131 0.76534 0.79714 1.19971 1.22985 1.20109 1.23422 0.98747 1.01345 0.95850 1.22709 0.96149 0.88060 0.95159 1.48542 1.51839 1.29237 1.03960 1.20983 0.80428 0.85521 0.83366 1.90727 1.42455 1.29209 1.83702 1.22049 1.04657 0.99105 0.78026 1.45937 1.21184 1.35823 1.19827 1.23322 0.84046 0.93863 0.90435 1.21111 1.06328 1.04126 0.99352 1.20881 0.86028 0.84116 0.83373 1.84979 1.51404 1.56872 1.30406 1.69481 1.23366 1.36299 1.12702 1.17483 0.84508 0.79299 0.83640 1.90965 1.27459 1.64245 1.64672 0.92846 0.90050 0.93133 0.80069 0.94197 0.93547 0.88692 0.88195 0.86571 0.85483 0.79093 0.74433 0.77963 0.71152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.09 71.98 0.65 -3.67 16 2 C 0.13 4.47 3.21 45.34 0.15 4.62 16 3 H 0.03 1.34 7.71 -2.38 -0.02 1.32 16 4 C 0.17 6.10 3.14 46.18 0.14 6.25 16 5 H 0.08 2.70 7.80 -2.39 -0.02 2.69 16 6 N -0.73 -35.81 5.22 -317.33 -1.66 -37.46 16 7 C -0.24 -12.46 9.96 84.03 0.84 -11.62 16 8 H 0.09 4.26 7.83 -2.91 -0.02 4.23 16 9 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 10 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 11 Si 0.98 45.14 29.55 68.60 2.03 47.17 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 13 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 15 C -0.15 -4.36 6.77 31.99 0.22 -4.15 16 16 C 0.10 1.84 6.69 86.86 0.58 2.42 16 17 N -0.60 -15.81 3.07 -788.04 -2.42 -18.22 16 18 C 0.51 13.59 7.71 87.66 0.68 14.27 16 19 O -0.58 -21.26 15.48 -3.05 -0.05 -21.30 16 20 C 0.09 1.40 4.84 85.63 0.41 1.81 16 21 N -0.51 -10.15 2.08 -661.79 -1.38 -11.52 16 22 C 0.22 2.03 10.40 83.40 0.87 2.90 16 23 C -0.28 -2.89 10.03 22.26 0.22 -2.67 16 24 C 0.45 8.05 7.91 85.22 0.67 8.72 16 25 O -0.44 -5.31 13.55 -84.35 -1.14 -6.45 16 26 N -0.66 -18.34 10.40 -438.82 -4.56 -22.90 16 27 C 0.65 20.29 8.34 179.59 1.50 21.79 16 28 O -0.59 -24.51 16.72 -5.25 -0.09 -24.60 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.65 6.90 -2.38 -0.02 1.64 16 32 H 0.37 20.41 7.56 -92.71 -0.70 19.71 16 33 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.10 1.34 7.48 -2.39 -0.02 1.32 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.13 2.31 7.08 -2.39 -0.02 2.29 16 39 H 0.19 0.39 8.03 -2.39 -0.02 0.37 16 40 H 0.24 -0.65 8.06 -2.91 -0.02 -0.67 16 41 H 0.20 0.47 8.06 -2.91 -0.02 0.45 16 42 H 0.43 2.79 8.98 -74.06 -0.66 2.12 16 Total: -1.00 -94.59 358.56 -1.88 -96.46 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.29 Total: 22.19 kcal Atomic # 6 Polarization: 29.25 SS G_CDS: 7.40 Total: 36.65 kcal Atomic # 7 Polarization: -140.38 SS G_CDS: -9.73 Total: -150.11 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -1.28 Total: -52.36 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -94.59 -1.88 -96.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986502265.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.990 kcal (2) G-P(sol) polarization free energy of solvation -94.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds