Wall clock time and date at job start Fri Apr 10 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.99804 * 2 1 4 4 C 1.54316 * 109.88251 * 121.10058 * 2 1 3 5 5 H 1.08997 * 110.87802 * 23.17448 * 4 2 1 6 6 N 1.46499 * 110.72033 * 259.96858 * 4 2 1 7 7 C 1.36937 * 120.00040 * 160.02292 * 6 4 2 8 8 H 1.07998 * 120.00326 * 0.02562 * 7 6 4 9 9 C 1.38812 * 119.99987 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00227 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00165 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47573 * 180.02562 * 11 9 7 13 13 H 1.48499 * 109.47239 * 59.99655 * 11 9 7 14 14 H 1.48508 * 109.47143 * 300.00298 * 11 9 7 15 15 C 1.55156 * 102.94387 * 141.61164 * 4 2 1 16 16 C 1.54919 * 101.57832 * 324.49474 * 15 4 2 17 17 N 1.47028 * 109.88007 * 238.90870 * 2 1 3 18 18 C 1.34776 * 125.64807 * 61.67734 * 17 2 1 19 19 O 1.21619 * 120.00114 * 355.01190 * 18 17 2 20 20 C 1.47299 * 119.99850 * 175.01900 * 18 17 2 21 21 C 1.38320 * 120.74170 * 79.59105 * 20 18 17 22 22 N 1.34942 * 119.02497 * 179.74956 * 21 20 18 23 23 C 1.46502 * 119.71024 * 180.26651 * 22 21 20 24 24 C 1.34459 * 120.59012 * 0.55641 * 22 21 20 25 25 O 1.21904 * 119.20329 * 179.71000 * 24 22 21 26 26 N 1.33319 * 121.59475 * 359.68886 * 24 22 21 27 27 C 1.32216 * 120.93421 * 0.02668 * 26 24 22 28 28 O 1.35013 * 120.33971 * 179.97438 * 27 26 24 29 29 H 1.09010 * 109.47276 * 298.90002 * 1 2 3 30 30 H 1.08999 * 109.47658 * 58.90074 * 1 2 3 31 31 H 1.09003 * 109.47035 * 178.90126 * 1 2 3 32 32 H 0.96994 * 120.00246 * 340.03064 * 6 4 2 33 33 H 0.97001 * 119.99789 * 359.97438 * 10 9 7 34 34 H 1.08997 * 111.00742 * 82.56657 * 15 4 2 35 35 H 1.08997 * 111.00985 * 206.42179 * 15 4 2 36 36 H 1.09002 * 110.36428 * 155.84891 * 16 15 4 37 37 H 1.08991 * 110.36675 * 278.05988 * 16 15 4 38 38 H 1.08003 * 120.48464 * 0.02562 * 21 20 18 39 39 H 1.08996 * 109.47611 * 180.28338 * 23 22 21 40 40 H 1.08998 * 109.47304 * 300.28740 * 23 22 21 41 41 H 1.09006 * 109.46602 * 60.28420 * 23 22 21 42 42 H 0.96704 * 113.99279 * 5.03759 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2426 5 1 1.3065 -1.4459 1.6210 6 7 2.4555 0.1959 2.2874 7 6 2.5576 -0.2228 3.5872 8 1 2.3431 -1.2501 3.8421 9 6 2.9368 0.6732 4.5773 10 7 3.1978 1.9254 4.2668 11 14 3.0767 0.1020 6.3502 12 1 3.4942 1.2414 7.2060 13 1 4.0863 -0.9831 6.4425 14 1 1.7600 -0.4067 6.8118 15 6 3.2876 -1.5142 0.6922 16 6 2.8144 -1.8794 -0.7370 17 7 2.0300 -0.7140 -1.1840 18 6 1.8084 -0.3611 -2.4658 19 8 1.0699 0.5709 -2.7210 20 6 2.4607 -1.1043 -3.5575 21 6 1.9596 -2.3216 -3.9822 22 7 2.5816 -2.9704 -4.9887 23 6 2.0602 -4.2579 -5.4544 24 6 3.6790 -2.4486 -5.5643 25 8 4.2239 -3.0589 -6.4681 26 7 4.1855 -1.2798 -5.1708 27 6 3.6222 -0.5894 -4.1940 28 8 4.1455 0.5928 -3.8048 29 1 -0.3634 0.4967 0.8998 30 1 -0.3634 0.5308 -0.8799 31 1 -0.3633 -1.0275 -0.0197 32 1 2.6485 1.1185 2.0586 33 1 3.1255 2.2220 3.3461 34 1 4.1654 -0.8689 0.6602 35 1 3.4853 -2.4111 1.2793 36 1 3.6715 -2.0337 -1.3925 37 1 2.1902 -2.7725 -0.7133 38 1 1.0808 -2.7444 -3.5180 39 1 2.6878 -4.6332 -6.2626 40 1 2.0642 -4.9711 -4.6301 41 1 1.0405 -4.1272 -5.8169 42 1 4.8873 0.8924 -4.3480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987515250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:34 Heat of formation + Delta-G solvation = -35.374227 kcal Electronic energy + Delta-G solvation = -27709.898992 eV Core-core repulsion = 23692.023024 eV Total energy + Delta-G solvation = -4017.875968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27690 -40.14804 -39.05887 -37.61719 -37.06477 -35.07276 -34.49003 -32.45244 -31.23254 -30.97973 -28.94429 -28.04453 -25.46027 -25.14148 -24.33251 -23.16296 -22.58360 -20.61969 -20.22393 -19.56963 -18.68819 -17.78999 -17.43729 -17.07031 -16.62989 -16.17461 -15.86533 -15.23578 -14.98578 -14.88596 -14.52880 -14.14117 -14.04394 -13.79119 -13.70198 -13.56384 -13.17478 -13.11935 -12.82664 -12.42316 -12.13963 -11.97419 -11.75846 -11.39538 -11.28125 -11.01819 -10.70991 -10.64104 -10.56033 -10.46190 -10.31146 -10.04877 -9.87217 -9.26997 -9.03253 -8.98518 -8.62191 -7.16598 -6.19119 -3.21595 0.14112 1.02790 1.82490 2.39596 2.80847 2.90919 3.29474 3.46753 3.49556 3.67555 3.67979 3.93985 4.21492 4.51812 4.58695 4.64985 4.72959 4.83688 4.84544 5.06124 5.10205 5.16987 5.30357 5.41857 5.47141 5.57902 5.60352 5.75644 5.79410 5.88509 5.91560 6.13619 6.27622 6.43080 6.45234 6.52184 6.70235 6.76057 7.30502 7.49430 7.69617 7.70392 8.05704 8.65729 9.09640 9.96225 10.09467 11.28615 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002931 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.690108 B = 9551.411380 C = 9614.299003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.078 0.922 4 C 0.183 3.817 5 H 0.067 0.933 6 N -0.726 5.726 7 C -0.337 4.337 8 H 0.066 0.934 9 C -0.040 4.040 10 N -0.939 5.939 11 Si 1.080 2.920 12 H -0.285 1.285 13 H -0.295 1.295 14 H -0.295 1.295 15 C -0.155 4.155 16 C 0.099 3.901 17 N -0.598 5.598 18 C 0.598 3.402 19 O -0.523 6.523 20 C -0.282 4.282 21 C 0.238 3.762 22 N -0.519 5.519 23 C 0.053 3.947 24 C 0.655 3.345 25 O -0.530 6.530 26 N -0.610 5.610 27 C 0.489 3.511 28 O -0.432 6.432 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.369 0.631 33 H 0.256 0.744 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.189 0.811 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.004 -12.089 -16.920 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.096 0.904 4 C 0.071 3.929 5 H 0.085 0.915 6 N -0.368 5.368 7 C -0.467 4.467 8 H 0.084 0.916 9 C -0.239 4.239 10 N -0.584 5.584 11 Si 0.910 3.090 12 H -0.210 1.210 13 H -0.222 1.222 14 H -0.222 1.222 15 C -0.196 4.196 16 C -0.025 4.025 17 N -0.331 5.331 18 C 0.383 3.617 19 O -0.398 6.398 20 C -0.294 4.294 21 C 0.099 3.901 22 N -0.234 5.234 23 C -0.089 4.089 24 C 0.356 3.644 25 O -0.405 6.405 26 N -0.368 5.368 27 C 0.287 3.713 28 O -0.225 6.225 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.203 0.797 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.206 0.794 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -3.415 -11.522 -16.162 20.140 hybrid contribution -0.362 -0.427 -1.610 1.704 sum -3.777 -11.949 -17.772 21.746 Atomic orbital electron populations 1.22067 0.94512 1.01771 1.02979 1.21965 0.94678 0.96825 0.84144 0.90415 1.21176 0.93533 0.91444 0.86756 0.91512 1.42349 1.82062 1.08437 1.03905 1.19982 1.44932 0.96993 0.84833 0.91559 1.25798 0.99362 0.94434 1.04276 1.70889 1.51332 1.15812 1.20334 0.83245 0.75902 0.74868 0.74939 1.21010 1.22204 1.22186 1.23558 1.01415 1.01902 0.92710 1.22388 0.94590 0.88099 0.97390 1.48512 1.51548 1.28481 1.04591 1.16831 0.80915 0.83311 0.80619 1.90818 1.36722 1.29285 1.82998 1.19478 1.02409 0.99435 1.08123 1.22517 0.94256 0.88587 0.84770 1.46115 1.25879 1.21623 1.29739 1.22362 1.01264 0.82113 1.03159 1.17387 0.79181 0.83944 0.83844 1.90985 1.59539 1.59822 1.30105 1.69679 1.35107 1.10601 1.21419 1.20138 0.84330 0.83347 0.83457 1.85078 1.50763 1.31117 1.55584 0.91107 0.91636 0.92947 0.79697 0.93245 0.90657 0.90399 0.91672 0.91520 0.79367 0.87180 0.89454 0.89575 0.72183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.09 37.16 0.34 -1.98 16 2 C 0.13 2.05 3.24 -66.95 -0.22 1.84 16 3 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 4 C 0.18 3.26 3.11 -66.10 -0.21 3.05 16 5 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 6 N -0.73 -16.82 5.25 -51.66 -0.27 -17.09 16 7 C -0.34 -8.84 9.98 -15.06 -0.15 -8.99 16 8 H 0.07 1.70 7.83 -52.49 -0.41 1.28 16 9 C -0.04 -1.12 5.50 -17.43 -0.10 -1.22 16 10 N -0.94 -28.06 13.70 55.49 0.76 -27.30 16 11 Si 1.08 24.80 29.92 -169.99 -5.09 19.71 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 15 C -0.15 -2.36 6.77 -24.58 -0.17 -2.53 16 16 C 0.10 1.15 6.73 -2.53 -0.02 1.13 16 17 N -0.60 -8.17 3.06 -164.32 -0.50 -8.68 16 18 C 0.60 8.30 6.72 -12.58 -0.08 8.21 16 19 O -0.52 -9.04 15.99 5.26 0.08 -8.95 16 20 C -0.28 -3.11 4.51 -104.70 -0.47 -3.59 16 21 C 0.24 1.78 10.23 -16.15 -0.17 1.62 16 22 N -0.52 -4.40 2.96 -128.87 -0.38 -4.78 16 23 C 0.05 0.24 10.57 59.85 0.63 0.88 16 24 C 0.65 8.48 8.32 -88.50 -0.74 7.74 16 25 O -0.53 -8.41 16.42 5.01 0.08 -8.33 16 26 N -0.61 -7.99 10.38 -16.47 -0.17 -8.16 16 27 C 0.49 5.79 7.93 -15.91 -0.13 5.66 16 28 O -0.43 -4.70 13.08 -16.75 -0.22 -4.92 16 29 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 30 H 0.06 1.01 6.76 -51.93 -0.35 0.66 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.37 9.04 6.34 -40.82 -0.26 8.78 16 33 H 0.26 7.55 6.77 -40.82 -0.28 7.27 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.70 7.61 -51.93 -0.40 0.30 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.19 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.11 0.69 6.82 -51.93 -0.35 0.33 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.42 2.65 8.98 45.56 0.41 3.06 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -37.27 356.46 -6.42 -43.69 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.62 Total: 7.62 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -1.47 Total: 11.83 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: -0.57 Total: -66.02 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.09 Total: 19.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.27 -6.42 -43.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987515250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.317 kcal (2) G-P(sol) polarization free energy of solvation -37.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds