Wall clock time and date at job start Fri Apr 10 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.99804 * 2 1 4 4 C 1.54316 * 109.88251 * 121.10058 * 2 1 3 5 5 H 1.08997 * 110.87802 * 23.17448 * 4 2 1 6 6 N 1.46499 * 110.72033 * 259.96858 * 4 2 1 7 7 C 1.36937 * 120.00040 * 160.02292 * 6 4 2 8 8 H 1.07998 * 120.00326 * 0.02562 * 7 6 4 9 9 C 1.38812 * 119.99987 * 180.02562 * 7 6 4 10 10 N 1.31624 * 120.00227 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00165 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47573 * 180.02562 * 11 9 7 13 13 H 1.48499 * 109.47239 * 59.99655 * 11 9 7 14 14 H 1.48508 * 109.47143 * 300.00298 * 11 9 7 15 15 C 1.55156 * 102.94387 * 141.61164 * 4 2 1 16 16 C 1.54919 * 101.57832 * 324.49474 * 15 4 2 17 17 N 1.47028 * 109.88007 * 238.90870 * 2 1 3 18 18 C 1.34776 * 125.64807 * 61.67734 * 17 2 1 19 19 O 1.21619 * 120.00114 * 355.01190 * 18 17 2 20 20 C 1.47299 * 119.99850 * 175.01900 * 18 17 2 21 21 C 1.38320 * 120.74170 * 79.59105 * 20 18 17 22 22 N 1.34942 * 119.02497 * 179.74956 * 21 20 18 23 23 C 1.46502 * 119.71024 * 180.26651 * 22 21 20 24 24 C 1.34459 * 120.59012 * 0.55641 * 22 21 20 25 25 O 1.21904 * 119.20329 * 179.71000 * 24 22 21 26 26 N 1.33319 * 121.59475 * 359.68886 * 24 22 21 27 27 C 1.32216 * 120.93421 * 0.02668 * 26 24 22 28 28 O 1.35013 * 120.33971 * 179.97438 * 27 26 24 29 29 H 1.09010 * 109.47276 * 298.90002 * 1 2 3 30 30 H 1.08999 * 109.47658 * 58.90074 * 1 2 3 31 31 H 1.09003 * 109.47035 * 178.90126 * 1 2 3 32 32 H 0.96994 * 120.00246 * 340.03064 * 6 4 2 33 33 H 0.97001 * 119.99789 * 359.97438 * 10 9 7 34 34 H 1.08997 * 111.00742 * 82.56657 * 15 4 2 35 35 H 1.08997 * 111.00985 * 206.42179 * 15 4 2 36 36 H 1.09002 * 110.36428 * 155.84891 * 16 15 4 37 37 H 1.08991 * 110.36675 * 278.05988 * 16 15 4 38 38 H 1.08003 * 120.48464 * 0.02562 * 21 20 18 39 39 H 1.08996 * 109.47611 * 180.28338 * 23 22 21 40 40 H 1.08998 * 109.47304 * 300.28740 * 23 22 21 41 41 H 1.09006 * 109.46602 * 60.28420 * 23 22 21 42 42 H 0.96704 * 113.99279 * 5.03759 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2426 5 1 1.3065 -1.4459 1.6210 6 7 2.4555 0.1959 2.2874 7 6 2.5576 -0.2228 3.5872 8 1 2.3431 -1.2501 3.8421 9 6 2.9368 0.6732 4.5773 10 7 3.1978 1.9254 4.2668 11 14 3.0767 0.1020 6.3502 12 1 3.4942 1.2414 7.2060 13 1 4.0863 -0.9831 6.4425 14 1 1.7600 -0.4067 6.8118 15 6 3.2876 -1.5142 0.6922 16 6 2.8144 -1.8794 -0.7370 17 7 2.0300 -0.7140 -1.1840 18 6 1.8084 -0.3611 -2.4658 19 8 1.0699 0.5709 -2.7210 20 6 2.4607 -1.1043 -3.5575 21 6 1.9596 -2.3216 -3.9822 22 7 2.5816 -2.9704 -4.9887 23 6 2.0602 -4.2579 -5.4544 24 6 3.6790 -2.4486 -5.5643 25 8 4.2239 -3.0589 -6.4681 26 7 4.1855 -1.2798 -5.1708 27 6 3.6222 -0.5894 -4.1940 28 8 4.1455 0.5928 -3.8048 29 1 -0.3634 0.4967 0.8998 30 1 -0.3634 0.5308 -0.8799 31 1 -0.3633 -1.0275 -0.0197 32 1 2.6485 1.1185 2.0586 33 1 3.1255 2.2220 3.3461 34 1 4.1654 -0.8689 0.6602 35 1 3.4853 -2.4111 1.2793 36 1 3.6715 -2.0337 -1.3925 37 1 2.1902 -2.7725 -0.7133 38 1 1.0808 -2.7444 -3.5180 39 1 2.6878 -4.6332 -6.2626 40 1 2.0642 -4.9711 -4.6301 41 1 1.0405 -4.1272 -5.8169 42 1 4.8873 0.8924 -4.3480 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987515250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:33 Heat of formation + Delta-G solvation = -67.907571 kcal Electronic energy + Delta-G solvation = -27711.309743 eV Core-core repulsion = 23692.023024 eV Total energy + Delta-G solvation = -4019.286719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.10099 -41.27563 -39.94879 -38.83321 -38.02208 -36.22672 -35.86306 -33.72502 -32.61618 -32.09951 -30.41980 -28.62182 -26.66196 -26.21942 -25.32467 -24.86317 -23.64708 -21.92248 -21.06425 -20.72390 -19.46696 -19.43147 -18.60597 -17.93131 -17.57461 -17.32328 -16.79181 -16.69915 -16.11401 -15.77111 -15.65325 -15.41919 -15.13901 -15.02607 -14.80013 -14.52167 -14.49235 -14.12211 -13.71474 -13.55780 -13.42679 -13.06021 -12.71348 -12.67034 -12.61407 -12.36747 -12.27640 -12.11744 -11.86191 -11.69461 -11.47367 -11.37695 -11.23528 -10.93885 -10.85240 -9.85114 -9.76037 -9.10906 -8.34804 -5.30793 -0.55912 0.14742 1.09254 1.39367 1.62426 1.72005 1.84785 1.87772 2.04296 2.42029 2.75269 2.95642 3.19819 3.42185 3.45938 3.63422 3.68871 3.89505 4.02730 4.05208 4.13285 4.20718 4.29484 4.33394 4.44812 4.45036 4.64956 4.66483 4.79315 4.87151 4.88730 5.02341 5.05008 5.17397 5.22011 5.28542 5.40175 5.65399 6.00413 6.41490 6.45902 6.51564 6.83092 6.97388 7.09643 7.98256 8.11893 9.16527 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022508 B = 0.002931 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.690108 B = 9551.411380 C = 9614.299003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.134 3.866 3 H 0.043 0.957 4 C 0.176 3.824 5 H 0.076 0.924 6 N -0.742 5.742 7 C -0.323 4.323 8 H 0.077 0.923 9 C -0.106 4.106 10 N -0.979 5.979 11 Si 1.126 2.874 12 H -0.300 1.300 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.149 4.149 16 C 0.108 3.892 17 N -0.595 5.595 18 C 0.607 3.393 19 O -0.562 6.562 20 C -0.310 4.310 21 C 0.278 3.722 22 N -0.508 5.508 23 C 0.045 3.955 24 C 0.647 3.353 25 O -0.572 6.572 26 N -0.639 5.639 27 C 0.487 3.513 28 O -0.445 6.445 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.357 0.643 33 H 0.243 0.757 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.243 0.757 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 -15.710 -17.217 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.061 0.939 4 C 0.067 3.933 5 H 0.094 0.906 6 N -0.383 5.383 7 C -0.455 4.455 8 H 0.094 0.906 9 C -0.297 4.297 10 N -0.627 5.627 11 Si 0.952 3.048 12 H -0.227 1.227 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.190 4.190 16 C -0.014 4.014 17 N -0.328 5.328 18 C 0.394 3.606 19 O -0.441 6.441 20 C -0.322 4.322 21 C 0.137 3.863 22 N -0.219 5.219 23 C -0.095 4.095 24 C 0.349 3.651 25 O -0.450 6.450 26 N -0.398 5.398 27 C 0.287 3.713 28 O -0.242 6.242 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.189 0.811 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.260 0.740 39 H 0.108 0.892 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -4.983 -15.217 -16.501 22.993 hybrid contribution 0.086 0.640 -1.608 1.733 sum -4.898 -14.577 -18.109 23.757 Atomic orbital electron populations 1.21960 0.93356 1.03129 1.01826 1.21645 0.95459 0.95148 0.84764 0.93912 1.21399 0.94860 0.90905 0.86148 0.90634 1.42562 1.82529 1.08850 1.04396 1.20353 1.42037 0.97086 0.85991 0.90553 1.27152 1.00121 0.94209 1.08211 1.71000 1.54742 1.17443 1.19543 0.82640 0.77078 0.74447 0.70673 1.22669 1.20192 1.20174 1.23375 0.98918 1.01281 0.95448 1.22509 0.95723 0.88423 0.94734 1.48490 1.51506 1.28832 1.03975 1.17065 0.80068 0.82692 0.80800 1.90803 1.38627 1.31076 1.83566 1.19247 1.03097 1.01313 1.08517 1.23201 0.93836 0.86603 0.82628 1.46152 1.24385 1.22495 1.28906 1.22755 1.02101 0.80581 1.04045 1.17468 0.80115 0.83824 0.83718 1.90956 1.61173 1.60866 1.31981 1.69562 1.36378 1.11466 1.22394 1.20233 0.84572 0.83263 0.83210 1.85060 1.51637 1.31202 1.56280 0.92729 0.92280 0.90246 0.81147 0.94691 0.93421 0.89247 0.90116 0.87060 0.74042 0.89211 0.85919 0.86463 0.70498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.09 71.98 0.65 -3.49 16 2 C 0.13 4.25 3.24 45.34 0.15 4.40 16 3 H 0.04 1.65 7.69 -2.39 -0.02 1.64 16 4 C 0.18 6.08 3.11 46.18 0.14 6.23 16 5 H 0.08 2.50 7.84 -2.39 -0.02 2.49 16 6 N -0.74 -34.88 5.25 -317.35 -1.67 -36.55 16 7 C -0.32 -16.90 9.98 84.03 0.84 -16.07 16 8 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 9 C -0.11 -5.92 5.50 84.86 0.47 -5.45 16 10 N -0.98 -60.36 13.70 21.65 0.30 -60.07 16 11 Si 1.13 49.83 29.92 68.60 2.05 51.89 16 12 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 15 C -0.15 -4.26 6.77 31.99 0.22 -4.04 16 16 C 0.11 2.09 6.73 86.86 0.58 2.67 16 17 N -0.60 -14.91 3.06 -792.04 -2.43 -17.34 16 18 C 0.61 15.61 6.72 86.63 0.58 16.20 16 19 O -0.56 -19.05 15.99 -4.09 -0.07 -19.11 16 20 C -0.31 -6.01 4.51 -19.92 -0.09 -6.10 16 21 C 0.28 2.82 10.23 84.23 0.86 3.68 16 22 N -0.51 -6.72 2.96 -679.95 -2.01 -8.73 16 23 C 0.05 0.21 10.57 127.77 1.35 1.56 16 24 C 0.65 15.86 8.32 179.61 1.49 17.36 16 25 O -0.57 -18.00 16.42 -5.00 -0.08 -18.08 16 26 N -0.64 -16.37 10.38 -438.20 -4.55 -20.92 16 27 C 0.49 11.08 7.93 85.59 0.68 11.75 16 28 O -0.45 -9.79 13.08 -82.84 -1.08 -10.88 16 29 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.06 1.78 6.76 -2.39 -0.02 1.76 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.36 18.31 6.34 -92.71 -0.59 17.72 16 33 H 0.24 15.01 6.77 -92.71 -0.63 14.38 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.08 1.40 7.61 -2.39 -0.02 1.38 16 37 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.24 -0.18 8.06 -2.91 -0.02 -0.20 16 39 H 0.09 0.90 6.82 -2.39 -0.02 0.89 16 40 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.12 -0.10 8.14 -2.38 -0.02 -0.12 16 42 H 0.43 5.77 8.98 -74.05 -0.67 5.11 16 Total: -1.00 -86.43 356.46 -1.64 -88.07 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.03 Total: 23.01 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: 7.93 Total: 28.70 kcal Atomic # 7 Polarization: -133.25 SS G_CDS: -10.36 Total: -143.60 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -1.23 Total: -48.07 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.89 kcal Total: -86.43 -1.64 -88.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987515250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.163 kcal (2) G-P(sol) polarization free energy of solvation -86.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds