Wall clock time and date at job start Fri Apr 10 2020 18:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.99813 * 2 1 4 4 C 1.54330 * 109.77698 * 121.16415 * 2 1 3 5 5 H 1.09003 * 110.51385 * 215.80752 * 4 2 1 6 6 N 1.46503 * 111.00389 * 338.95439 * 4 2 1 7 7 C 1.36930 * 120.00144 * 200.23683 * 6 4 2 8 8 H 1.08004 * 120.00161 * 0.02562 * 7 6 4 9 9 C 1.38819 * 120.00183 * 180.02562 * 7 6 4 10 10 N 1.31613 * 119.99715 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00155 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47071 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47236 * 119.99670 * 11 9 7 14 14 H 1.48499 * 109.47209 * 239.99839 * 11 9 7 15 15 C 1.55155 * 103.02584 * 97.49737 * 4 2 1 16 16 C 1.54913 * 101.58002 * 35.30447 * 15 4 2 17 17 N 1.47019 * 109.88059 * 238.89866 * 2 1 3 18 18 C 1.34782 * 125.64522 * 59.56600 * 17 2 1 19 19 O 1.21617 * 120.00321 * 4.79552 * 18 17 2 20 20 C 1.47308 * 119.99806 * 184.80011 * 18 17 2 21 21 C 1.38324 * 120.73420 * 280.05119 * 20 18 17 22 22 N 1.34957 * 119.02136 * 180.25188 * 21 20 18 23 23 C 1.46492 * 119.70507 * 180.02562 * 22 21 20 24 24 C 1.34458 * 120.58345 * 0.04587 * 22 21 20 25 25 O 1.21911 * 119.19278 * 179.97438 * 24 22 21 26 26 N 1.33317 * 121.60068 * 359.95332 * 24 22 21 27 27 C 1.32213 * 120.93376 * 0.02562 * 26 24 22 28 28 O 1.35010 * 120.33249 * 179.97438 * 27 26 24 29 29 H 1.09002 * 109.47503 * 179.64499 * 1 2 3 30 30 H 1.09000 * 109.47198 * 299.64510 * 1 2 3 31 31 H 1.09004 * 109.47169 * 59.64464 * 1 2 3 32 32 H 0.97002 * 120.00067 * 20.23831 * 6 4 2 33 33 H 0.97001 * 120.00048 * 180.02562 * 10 9 7 34 34 H 1.09007 * 111.00045 * 277.23443 * 15 4 2 35 35 H 1.08998 * 111.00988 * 153.38221 * 15 4 2 36 36 H 1.08998 * 110.36702 * 204.15561 * 16 15 4 37 37 H 1.08996 * 110.36802 * 81.83339 * 16 15 4 38 38 H 1.08000 * 120.49463 * 0.25432 * 21 20 18 39 39 H 1.09001 * 109.46979 * 180.02562 * 23 22 21 40 40 H 1.09004 * 109.47113 * 300.02128 * 23 22 21 41 41 H 1.08999 * 109.47641 * 60.02230 * 23 22 21 42 42 H 0.96701 * 114.00525 * 5.02370 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0522 -0.7515 1.2427 5 1 2.9606 -0.2815 1.6197 6 7 1.0287 -0.8105 2.2893 7 6 1.3907 -1.0479 3.5883 8 1 2.4308 -1.1912 3.8416 9 6 0.4208 -1.1042 4.5799 10 7 -0.8466 -0.9290 4.2715 11 14 0.9147 -1.4273 6.3522 12 1 2.3888 -1.5877 6.4339 13 1 0.4931 -0.2834 7.2000 14 1 0.2549 -2.6684 6.8316 15 6 2.3561 -2.1697 0.6916 16 6 2.8613 -1.8466 -0.7368 17 7 2.0300 -0.7142 -1.1838 18 6 1.7753 -0.3846 -2.4657 19 8 1.1504 0.6271 -2.7208 20 6 2.2538 -1.2498 -3.5576 21 6 3.5678 -1.1870 -3.9852 22 7 3.9680 -1.9919 -4.9919 23 6 5.3563 -1.9382 -5.4562 24 6 3.1035 -2.8424 -5.5726 25 8 3.4919 -3.5576 -6.4802 26 7 1.8320 -2.9227 -5.1798 27 6 1.3744 -2.1631 -4.1991 28 8 0.0844 -2.2541 -3.8114 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3633 0.5083 0.8931 31 1 -0.3634 0.5194 -0.8868 32 1 0.0946 -0.6814 2.0620 33 1 -1.5243 -0.9681 4.9644 34 1 1.4521 -2.7778 0.6580 35 1 3.1327 -2.6592 1.2793 36 1 2.7178 -2.7049 -1.3931 37 1 3.9123 -1.5590 -0.7114 38 1 4.2634 -0.5040 -3.5203 39 1 5.4956 -2.6517 -6.2683 40 1 5.5815 -0.9331 -5.8129 41 1 6.0248 -2.1898 -4.6329 42 1 -0.4113 -2.9556 -4.2554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987515251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:36 Heat of formation + Delta-G solvation = -29.215871 kcal Electronic energy + Delta-G solvation = -27787.396256 eV Core-core repulsion = 23769.787335 eV Total energy + Delta-G solvation = -4017.608921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23606 -40.10127 -39.01840 -37.59756 -37.02195 -35.03347 -34.26220 -32.30843 -31.21834 -30.79175 -28.89844 -28.00689 -25.43628 -25.28844 -24.36181 -23.40378 -22.60379 -20.36637 -20.17910 -18.95618 -18.65481 -17.86496 -17.38667 -17.04818 -16.56985 -15.99048 -15.67579 -15.41081 -14.90627 -14.74553 -14.45516 -14.30340 -14.01658 -13.76897 -13.67882 -13.43261 -13.16167 -12.85008 -12.56960 -12.17125 -12.02955 -11.83479 -11.60761 -11.31380 -11.25044 -11.02751 -10.87975 -10.56104 -10.50572 -10.44777 -10.25529 -10.03724 -9.84861 -9.66754 -9.02022 -8.95507 -8.54360 -7.08041 -5.86588 -3.16716 0.18145 1.07165 1.86690 2.44955 2.85272 2.99017 3.33368 3.37518 3.43182 3.45694 3.71956 3.98440 4.26996 4.50394 4.55779 4.67884 4.77588 4.88091 4.93218 5.10246 5.16470 5.26681 5.42799 5.49785 5.51323 5.56778 5.73117 5.82206 5.95391 6.03978 6.16095 6.23605 6.48215 6.49307 6.62383 6.74084 6.76794 6.92422 7.34320 7.57269 7.61857 7.73384 8.12779 8.31756 9.43650 9.98162 10.32827 11.35801 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.002963 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.153041 B = 9446.942336 C = 9755.130247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.076 0.924 4 C 0.174 3.826 5 H 0.063 0.937 6 N -0.717 5.717 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.153 4.153 16 C 0.098 3.902 17 N -0.598 5.598 18 C 0.598 3.402 19 O -0.523 6.523 20 C -0.281 4.281 21 C 0.237 3.763 22 N -0.520 5.520 23 C 0.053 3.947 24 C 0.655 3.345 25 O -0.531 6.531 26 N -0.611 5.611 27 C 0.489 3.511 28 O -0.431 6.431 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.391 0.609 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.189 0.811 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.656 -0.854 -16.676 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.094 0.906 4 C 0.062 3.938 5 H 0.081 0.919 6 N -0.360 5.360 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.195 4.195 16 C -0.026 4.026 17 N -0.331 5.331 18 C 0.383 3.617 19 O -0.399 6.399 20 C -0.294 4.294 21 C 0.098 3.902 22 N -0.234 5.234 23 C -0.089 4.089 24 C 0.356 3.644 25 O -0.406 6.406 26 N -0.369 5.369 27 C 0.288 3.712 28 O -0.224 6.224 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.229 0.771 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.206 0.794 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 11.329 -0.953 -17.458 20.833 hybrid contribution 0.090 -0.207 1.046 1.070 sum 11.420 -1.160 -16.412 20.028 Atomic orbital electron populations 1.21998 0.94321 1.02655 1.02715 1.21888 0.95619 0.95794 0.84099 0.90647 1.21170 0.93288 0.91948 0.87352 0.91866 1.42666 1.05146 1.85277 1.02948 1.19264 0.93000 1.41408 0.83967 0.90999 1.24760 0.95295 1.02404 0.98165 1.69663 0.99345 1.56208 1.32491 0.86113 0.77526 0.77453 0.85010 1.20518 1.21812 1.21848 1.23563 1.01810 1.01466 0.92618 1.22386 0.94227 0.88442 0.97509 1.48568 1.49509 1.30448 1.04615 1.16816 0.80020 0.84230 0.80638 1.90823 1.40411 1.25598 1.83041 1.19496 0.93253 1.08869 1.07755 1.22524 0.94185 0.88718 0.84786 1.46111 1.14504 1.33022 1.29754 1.22353 0.78019 1.05336 1.03171 1.17389 0.82238 0.80872 0.83858 1.90985 1.75966 1.43657 1.29963 1.69675 1.14406 1.32007 1.20790 1.20139 0.84429 0.83421 0.83247 1.85087 1.17833 1.56466 1.63035 0.92314 0.90090 0.92195 0.77061 0.93373 0.90544 0.90503 0.91767 0.91558 0.79359 0.87217 0.89604 0.89468 0.72244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 7.94 37.16 0.30 -2.52 16 2 C 0.13 2.08 3.46 -66.95 -0.23 1.85 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.17 3.07 3.44 -66.09 -0.23 2.85 16 5 H 0.06 1.10 8.12 -51.93 -0.42 0.67 16 6 N -0.72 -16.46 5.02 -51.65 -0.26 -16.72 16 7 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 11 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 C -0.15 -2.29 6.77 -24.58 -0.17 -2.46 16 16 C 0.10 1.12 6.73 -2.53 -0.02 1.10 16 17 N -0.60 -8.13 3.08 -164.31 -0.51 -8.64 16 18 C 0.60 8.31 6.64 -12.57 -0.08 8.23 16 19 O -0.52 -9.13 16.19 5.26 0.09 -9.05 16 20 C -0.28 -3.12 4.51 -104.70 -0.47 -3.59 16 21 C 0.24 1.79 10.23 -16.15 -0.17 1.62 16 22 N -0.52 -4.43 2.96 -128.87 -0.38 -4.81 16 23 C 0.05 0.25 10.57 59.84 0.63 0.88 16 24 C 0.65 8.52 8.32 -88.50 -0.74 7.79 16 25 O -0.53 -8.47 16.42 5.00 0.08 -8.39 16 26 N -0.61 -8.03 10.38 -16.47 -0.17 -8.20 16 27 C 0.49 5.81 7.93 -15.91 -0.13 5.68 16 28 O -0.43 -4.70 13.08 -16.74 -0.22 -4.91 16 29 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 30 H 0.08 1.57 6.74 -51.93 -0.35 1.22 16 31 H 0.06 1.07 6.90 -51.93 -0.36 0.71 16 32 H 0.39 9.58 4.97 -40.82 -0.20 9.38 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.67 7.61 -51.93 -0.40 0.28 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.19 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.11 0.69 6.82 -51.93 -0.35 0.34 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.42 2.66 8.98 45.56 0.41 3.07 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -36.28 354.33 -6.47 -42.75 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.60 Total: 7.81 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: -1.54 Total: 14.59 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.59 Total: -64.47 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.28 -6.47 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987515251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.530 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds